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* Consolidate documentation under doc/ directory
Move user-facing guides from release_docs/ and doxygen/ into a single
doc/ root. release_docs/ now holds only release artifacts (changelogs,
history, release process, maintainer info).
- git mv release_docs/INSTALL*.md, USING_*.md, README_HPC.md,
BuildSystemNotes.md, AutotoolsToCMakeOptions.md,
HDF5_Library_2.0.0_Migration_Guide.md → doc/
- git mv doxygen/ → doc/doxygen/
- Update CMakeLists.txt: HDF5_DOXYGEN_DIR and add_subdirectory path
- Update CMakeInstallation.cmake: all install paths for moved files
- Update bin/make_vers: hardcoded doxygen/ path substitution
- Update doc/doxygen/CMakeLists.txt: EXAMPLES_DIRECTORY and comments
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* Add HDF5_DOCS_DIR variable for doc/ root path
Introduce HDF5_DOCS_DIR = \${HDF5_SOURCE_DIR}/doc so that
CMakeInstallation.cmake and future callers reference the doc/
directory symbolically rather than by hardcoded path.
HDF5_DOXYGEN_DIR is now derived from HDF5_DOCS_DIR.
1121 lines
32 KiB
Plaintext
1121 lines
32 KiB
Plaintext
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/** \page FMTDISC HDF5 File Format Discussion
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Navigate back: \ref index "Main" / \ref TN
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<hr>
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<dl>
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<dt>Document's Audience:</dt>
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<dd>Current H5 library designers and knowledgeable external developers.</dd>
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<dt>Background Reading:</dt>
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<dd>\ref FMT4 <br />This describes the current HDF5 file format.</dd>
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</dl>
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\section sec_fmtdisc_intro Introduction
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<strong>What is this document about?</strong><br />
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This document attempts to explain the HDF5 file format specification with a
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few examples and describes some potential improvements to the format specification.
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\section sec_fmtdisc_exam File Format Examples
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This section has several small programs and describes the format of a file
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created with each of them.
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Example program one - <em>Create an empty file</em>:
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\code
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#include "hdf5.h"
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#include <assert.h>
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int main()
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{
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hid_t fid; /* File ID */
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herr_t ret; /* Generic return value */
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/* Create the file */
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fid=H5Fcreate("example1.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
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assert(fid>=0);
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/* Close the file */
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ret=H5Fclose(fid);
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assert(ret>=0);
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return(0);
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}
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\endcode
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<table>
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<caption><strong>Super Block</strong></caption>
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<tr align="center">
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<th width="25%">byte</th>
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<th width="25%">byte</th>
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<th width="25%">byte</th>
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<th width="25%">byte</th>
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</tr>
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<tr align="center">
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<td>\211</td>
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<td>'H'</td>
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<td>'D'</td>
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<td>'F'</td>
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</tr>
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<tr align="center">
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<td>\\r</td>
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<td>\\n</td>
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<td>\032</td>
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<td>\\n</td>
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</tr>
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<tr align="center">
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<td>0</td>
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<td>0</td>
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<td>0</td>
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<td>0</td>
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</tr>
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<tr align="center">
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<td>0</td>
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<td>8</td>
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<td>8</td>
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<td>0</td>
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</tr>
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<tr align="center">
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<td colspan="2">4</td>
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<td colspan="2">16</td>
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</tr>
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<tr align="center">
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<td colspan="4">0x00000003</td>
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</tr>
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<tr align="center">
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<td colspan="4">0</td>
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</tr>
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<tr align="center">
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<td colspan="4"><br />0xffffffffffffffff<br /><br /></td>
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</tr>
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<tr align="center">
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<td colspan="4">?</td>
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</tr>
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<tr align="center">
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<td colspan="4"><br />0xffffffffffffffff<br /><br /></td>
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</tr>
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<tr align="center">
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<td colspan="4">
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<table border="" width="100%">
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<tr align="center">
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<td colspan="4">0</td>
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</tr>
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<tr align="center">
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<td colspan="4"><br />928<br /><br /></td>
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</tr>
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<tr align="center">
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<td colspan="4">H5G_CACHED_STAB (1)</td>
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</tr>
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<tr align="center">
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<td colspan="4">0</td>
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</tr>
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<tr align="center">
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<td colspan="4">
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<table border="" width="100%">
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<tr align="center">
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<td colspan="4"><br />384<br /><br /></td>
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</tr>
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<tr align="center">
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<td colspan="4"><br />96<br /><br /></td>
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</tr>
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</table>
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</td>
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</tr>
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</table>
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</td>
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</tr>
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</table>
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\code
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%h5debug example1.h5
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Reading signature at address 0 (rel)
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File Super Block...
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File name: example1.h5
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File access flags 0x00000000
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File open reference count: 1
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Address of super block: 0 (abs)
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Size of user block: 0 bytes
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Super block version number: 0
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Free list version number: 0
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Root group symbol table entry version number: 0
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Shared header version number: 0
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Size of file offsets (haddr_t type): 8 bytes
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Size of file lengths (hsize_t type): 8 bytes
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Symbol table leaf node 1/2 rank: 4
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Symbol table internal node 1/2 rank: 16
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File consistency flags: 0x00000003
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Base address: 0 (abs)
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Free list address: UNDEF (rel)
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Address of driver information block: UNDEF (rel)
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Root group symbol table entry:
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Name offset into private heap: 0
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Object header address: 928
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Dirty: Yes
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Cache info type: Symbol Table
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Cached information:
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B-tree address: 384
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Heap address: 96
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\endcode
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<table>
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<caption><strong>Root Group Object Header</strong></caption>
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<tr align="center">
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<th width="25%">byte</th>
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<th width="25%">byte</th>
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<th width="25%">byte</th>
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<th width="25%">byte</th>
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</tr>
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<tr align="center">
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<td width="25%">1</td>
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<td width="25%">0</td>
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<td colspan="2" width="50%">2</td>
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</tr>
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<tr align="center">
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<td colspan="4">1</td>
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</tr>
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<tr align="center">
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<td colspan="4">32</td>
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</tr>
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<tr align="center">
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<td colspan="2">0x0011</td>
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<td colspan="2">16</td>
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</tr>
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<tr align="center">
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<td>0x01</td>
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<td colspan="3">0</td>
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</tr>
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<tr align="center">
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<td colspan="4">
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<table border="" width="100%">
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<tr align="center">
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<td colspan="4"><br />384<br /><br /></td>
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</tr>
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<tr align="center">
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<td colspan="4"><br />96<br /><br /></td>
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</tr>
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</table>
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</td>
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</tr>
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<tr align="center">
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<td colspan="2">0</td>
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<td colspan="2">0</td>
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</tr>
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<tr align="center">
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<td>0x00</td>
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<td colspan="3">0</td>
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</tr>
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</table>
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\code
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%h5debug example1.h5 928
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New address: 928
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Reading signature at address 928 (rel)
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Object Header...
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Dirty: 0
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Version: 1
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Header size (in bytes): 16
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Number of links: 1
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Number of messages (allocated): 2 (32)
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Number of chunks (allocated): 1 (8)
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Chunk 0...
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Dirty: 0
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Address: 944
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Size in bytes: 32
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Message 0...
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Message ID (sequence number): 0x0011 stab(0)
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Shared message: No
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Constant: Yes
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Raw size in obj header: 16 bytes
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Chunk number: 0
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Message Information:
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B-tree address: 384
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Name heap address: 96
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Message 1...
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Message ID (sequence number): 0x0000 null(0)
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Shared message: No
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Constant: No
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Raw size in obj header: 0 bytes
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Chunk number: 0
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Message Information:
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<no info="" for="" this="" message="">
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\endcode
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<table>
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<caption><strong>Root Group Local Heap</strong></caption>
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<tr align="center">
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<th width="25%">byte</th>
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<th width="25%">byte</th>
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<th width="25%">byte</th>
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<th width="25%">byte</th>
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</tr>
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<tr align="center">
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<td>'H'</td>
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<td>'E'</td>
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<td>'A'</td>
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<td>'P'</td>
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</tr>
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<tr align="center">
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<td colspan="4">0</td>
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</tr>
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<tr align="center">
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<td colspan="4">256</td>
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</tr>
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<tr align="center">
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<td colspan="4">8</td>
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</tr>
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<tr align="center">
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<td colspan="4">128</td>
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</tr>
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</table>
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\code
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%h5debug example1.h5 96
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New address: 96
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Reading signature at address 96 (rel)
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Local Heap...
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Dirty: 0
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Header size (in bytes): 32
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Address of heap data: 128
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Data bytes allocated on disk: 256
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Data bytes allocated in core: 256
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Free Blocks (offset, size):
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Block #0: 8, 248
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Percent of heap used: 3.12%
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Data follows (`__' indicates free region)...
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0: 00 00 00 00 00 00 00 00 __ __ __ __ __ __ __ __ ........
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16: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
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32: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
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48: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
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64: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
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80: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
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|
96: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
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|
112: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
128: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
144: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
160: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
176: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
192: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
208: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
224: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
240: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
|
|
\endcode
|
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|
|
<table>
|
|
<caption><strong>Root Group B-tree</strong></caption>
|
|
|
|
<tr align="center">
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>'T'</td>
|
|
<td>'R'</td>
|
|
<td>'E'</td>
|
|
<td>'E'</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>0</td>
|
|
<td>0</td>
|
|
<td colspan="2">0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />0xffffffffffffffff<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />0xffffffffffffffff<br /><br /></td>
|
|
</tr>
|
|
</table>
|
|
|
|
\code
|
|
%h5debug example1.h5 384 96
|
|
|
|
New address: 384
|
|
Reading signature at address 384 (rel)
|
|
Tree type ID: H5B_SNODE_ID
|
|
Size of node: 544
|
|
Size of raw (disk) key: 8
|
|
Dirty flag: False
|
|
Number of initial dirty children: 0
|
|
Level: 0
|
|
Address of left sibling: UNDEF
|
|
Address of right sibling: UNDEF
|
|
Number of children (max): 0 (32)
|
|
|
|
\endcode
|
|
|
|
Example program two - <em>Create a file with a single dataset in it</em>:
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\code
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#include "hdf5.h"
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#include <assert.h>
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int main()
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{
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hid_t fid; /* File ID */
|
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hid_t sid; /* Dataspace ID */
|
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hid_t did; /* Dataset ID */
|
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herr_t ret; /* Generic return value */
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|
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/* Create the file */
|
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fid=H5Fcreate("example2.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
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assert(fid>=0);
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|
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/* Create a scalar dataspace for the dataset */
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sid=H5Screate(H5S_SCALAR);
|
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assert(sid>=0);
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|
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/* Create a trivial dataset */
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did=H5Dcreate(fid, "Dataset", H5T_NATIVE_INT, sid, H5P_DEFAULT);
|
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assert(did>=0);
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|
|
/* Close the dataset */
|
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ret=H5Dclose(did);
|
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assert(ret>=0);
|
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|
|
/* Close the dataspace */
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ret=H5Sclose(sid);
|
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assert(ret>=0);
|
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|
|
/* Close the file */
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ret=H5Fclose(fid);
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assert(ret>=0);
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return(0);
|
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}
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|
\endcode
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|
|
|
<table border="">
|
|
<caption align="top"><strong>Super Block</strong></caption>
|
|
<tr align="center">
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>\211</td>
|
|
<td>'H'</td>
|
|
<td>'D'</td>
|
|
<td>'F'</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>\\r</td>
|
|
<td>\\n</td>
|
|
<td>\032</td>
|
|
<td>\\n</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>0</td>
|
|
<td>0</td>
|
|
<td>0</td>
|
|
<td>0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>0</td>
|
|
<td>8</td>
|
|
<td>8</td>
|
|
<td>0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="2">4</td>
|
|
<td colspan="2">16</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">0x00000003</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />0xffffffffffffffff<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">?</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />0xffffffffffffffff<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<tr align="center">
|
|
<td colspan="4">0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />928<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">H5G_CACHED_STAB (1)</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<tr align="center">
|
|
<td colspan="4"><br />384<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />96<br /><br /></td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
|
|
\code
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|
%h5debug example2.h5
|
|
|
|
Reading signature at address 0 (rel)
|
|
File Super Block...
|
|
File name: example2.h5
|
|
File access flags 0x00000000
|
|
File open reference count: 1
|
|
Address of super block: 0 (abs)
|
|
Size of user block: 0 bytes
|
|
Super block version number: 0
|
|
Free list version number: 0
|
|
Root group symbol table entry version number: 0
|
|
Shared header version number: 0
|
|
Size of file offsets (haddr_t type): 8 bytes
|
|
Size of file lengths (hsize_t type): 8 bytes
|
|
Symbol table leaf node 1/2 rank: 4
|
|
Symbol table internal node 1/2 rank: 16
|
|
File consistency flags: 0x00000003
|
|
Base address: 0 (abs)
|
|
Free list address: UNDEF (rel)
|
|
Address of driver information block: UNDEF (rel)
|
|
Root group symbol table entry:
|
|
Name offset into private heap: 0
|
|
Object header address: 928
|
|
Dirty: Yes
|
|
Cache info type: Symbol Table
|
|
Cached entry information:
|
|
B-tree address: 384
|
|
Heap address: 96
|
|
\endcode
|
|
|
|
<table border="">
|
|
<caption align="top"><strong>Root Group Object Header</strong></caption>
|
|
<tr align="center">
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
</tr>
|
|
<tr align="center">
|
|
<td width="25%">1</td>
|
|
<td width="25%">0</td>
|
|
<td colspan="2" width="50%">2</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">1</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">32</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="2">0x0011</td>
|
|
<td colspan="2">16</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>0x01</td>
|
|
<td colspan="3">0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<tr align="center">
|
|
<td colspan="4"><br />384<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />96<br /><br /></td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="2">0</td>
|
|
<td colspan="2">0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>0x00</td>
|
|
<td colspan="3">0</td>
|
|
</tr>
|
|
</table>
|
|
|
|
\code
|
|
%h5debug example2.h5 928
|
|
|
|
New address: 928
|
|
Reading signature at address 928 (rel)
|
|
Object Header...
|
|
Dirty: 0
|
|
Version: 1
|
|
Header size (in bytes): 16
|
|
Number of links: 1
|
|
Number of messages (allocated): 2 (32)
|
|
Number of chunks (allocated): 1 (8)
|
|
Chunk 0...
|
|
Dirty: 0
|
|
Address: 944
|
|
Size in bytes: 32
|
|
Message 0...
|
|
Message ID: 0x0011 stab(0)
|
|
Shared message: No
|
|
Constant: Yes
|
|
Raw size in obj header: 16 bytes
|
|
Chunk number: 0
|
|
Message Information:
|
|
B-tree address: 384
|
|
Name heap address: 96
|
|
Message 1...
|
|
Message ID: 0x0000 null(0)
|
|
Shared message: No
|
|
Constant: No
|
|
Raw size in obj header: 0 bytes
|
|
Chunk number: 0
|
|
Message Information:
|
|
<no info="" for="" this="" message="">
|
|
\endcode
|
|
|
|
<table border="">
|
|
<caption align="top"><strong>Root Group Local Heap</strong></caption>
|
|
<tr align="center">
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>'H'</td>
|
|
<td>'E'</td>
|
|
<td>'A'</td>
|
|
<td>'P'</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">256</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">16</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">128</td>
|
|
</tr>
|
|
</table>
|
|
|
|
\code
|
|
%h5debug example2.h5 96
|
|
|
|
New address: 96
|
|
Reading signature at address 96 (rel)
|
|
Local Heap...
|
|
Dirty: 0
|
|
Header size (in bytes): 32
|
|
Address of heap data: 128
|
|
Data bytes allocated on disk: 256
|
|
Data bytes allocated in core: 256
|
|
Free Blocks (offset, size):
|
|
Block #0: 16, 240
|
|
Percent of heap used: 6.25%
|
|
Data follows (`__' indicates free region)...
|
|
0: 00 00 00 00 00 00 00 00 44 61 74 61 73 65 74 00 ........Dataset.
|
|
16: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
32: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
48: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
64: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
80: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
96: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
112: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
128: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
144: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
160: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
176: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
192: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
208: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
224: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
240: __ __ __ __ __ __ __ __ __ __ __ __ __ __ __ __
|
|
\endcode
|
|
|
|
<table border="">
|
|
<caption align="top"><strong>Root Group B-tree</strong></caption>
|
|
<tr align="center">
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>'T'</td>
|
|
<td>'R'</td>
|
|
<td>'E'</td>
|
|
<td>'E'</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>0</td>
|
|
<td>0</td>
|
|
<td colspan="2">1</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />0xffffffffffffffff<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />0xffffffffffffffff<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />0<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />1248<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />8<br /><br /></td>
|
|
</tr>
|
|
</table>
|
|
|
|
\code
|
|
%h5debug example2.h5 384 96
|
|
|
|
New address: 384
|
|
Reading signature at address 384 (rel)
|
|
Tree type ID: H5B_SNODE_ID
|
|
Size of node: 544
|
|
Size of raw (disk) key: 8
|
|
Dirty flag: False
|
|
Number of initial dirty children: 0
|
|
Level: 0
|
|
Address of left sibling: UNDEF
|
|
Address of right sibling: UNDEF
|
|
Number of children (max): 1 (32)
|
|
Child 0...
|
|
Address: 1248
|
|
Left Key:
|
|
Heap offset: 0
|
|
Name :
|
|
Right Key:
|
|
Heap offset: 8
|
|
Name : Dataset
|
|
\endcode
|
|
|
|
<table border="">
|
|
<caption align="top"><strong>Root Group B-tree Symbol Table Node</strong></caption>
|
|
<tr align="center">
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>'S'</td>
|
|
<td>'N'</td>
|
|
<td>'O'</td>
|
|
<td>'D'</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td>1</td>
|
|
<td>0</td>
|
|
<td colspan="2">1</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<tr align="center">
|
|
<td colspan="4">8</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br />976<br /><br /></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4">0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><br /><br />0<br /><br /><br /></td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
|
|
\code
|
|
%h5debug example2.h5 1248 96
|
|
|
|
New address: 1248
|
|
Reading signature at address 1248 (rel)
|
|
Symbol Table Node...
|
|
Dirty: No
|
|
Size of Node (in bytes): 328
|
|
Number of Symbols: 1 of 8
|
|
Symbol 0:
|
|
Name: `Dataset'
|
|
Name offset into private heap: 8
|
|
Object header address: 976
|
|
Dirty: No
|
|
Cache info type: Nothing Cached
|
|
\endcode
|
|
|
|
<table border="">
|
|
<caption align="top"><strong>'/Dataset' Object Header</strong></caption>
|
|
<tr align="center">
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
<th width="25%">byte</th>
|
|
</tr>
|
|
<tr align="center">
|
|
<td ><em>Version:</em> 1</td>
|
|
<td ><em>Reserved:</em> 0</td>
|
|
<td colspan="2"><em>Number of Header Messages:</em> 6</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><em>Object Reference Count:</em> 1</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="4"><em>Total Object Header Size:</em> 256</td>
|
|
</tr>
|
|
<!-- Fill Value Header Message -->
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<caption align="top" color="#80FFFF"><em>Fill Value Header Message</em></caption>
|
|
<tr align="center">
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Type -->
|
|
<td colspan="2"><em>Message Type:</em> 0x0005</td>
|
|
<!-- Object Header Message Length -->
|
|
<td colspan="2"><em>Message Data Size:</em> 8</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Flags -->
|
|
<td><em>Flags:</em> 0x01</td>
|
|
<!-- Reserved -->
|
|
<td colspan="3"><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Version -->
|
|
<td><em>Version:</em> 1</td>
|
|
<!-- Space Allocation Time -->
|
|
<td><em>Space Allocation Time:</em> 2 (Late)</td>
|
|
<!-- Fill Value Writing Time -->
|
|
<td><em>Fill Value Writing Time:</em> 0 (At allocation)</td>
|
|
<!-- Fill Value Defined -->
|
|
<td><em>Fill Value Defined:</em> 0 (Undefined)</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Fill Value Datatype Size -->
|
|
<td colspan="4"><em>Fill Value Datatype Size:</em> 0 (Use dataset's datatype for fill-value datatype)</td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<!-- Datatype Header Message -->
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<caption align="top"><em>Datatype Header Message</em></caption>
|
|
<tr align="center">
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Type -->
|
|
<td colspan="2"><em>Message Type:</em> 0x0003</td>
|
|
<!-- Object Header Message Length -->
|
|
<td colspan="2"><em>Message Data Size:</em> 16</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Flags -->
|
|
<td><em>Flags:</em> 0x01</td>
|
|
<!-- Reserved -->
|
|
<td colspan="3"><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Type Class and Version -->
|
|
<td>
|
|
<table border="" width="100%">
|
|
<tr align="center">
|
|
<td width="50%"><em>Version:</em> 0x1</td>
|
|
<td><em>Class:</em> 0x0 (Fixed-Point)</td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
<!-- Class Bit Field -->
|
|
<td colspan="3"><em>Fixed-Point Bit-Field:</em> 0x08 (Little-endian, No padding, Signed)</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Type Size (in bytes) -->
|
|
<td colspan="4"><em>Size:</em> 4</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Bit Offset -->
|
|
<td colspan="2"><em>Bit Offset:</em> 0</td>
|
|
<!-- Bit Precision -->
|
|
<td colspan="2"><em>Bit Precision:</em> 32</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Message alignment filler -->
|
|
<td colspan="4"><em>Message Alignment Filler:</em> -</td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<!-- Dataspace Header Message -->
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<caption align="top"><em>Dataspace Header Message</em></caption>
|
|
<tr align="center">
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Type -->
|
|
<td colspan="2"><em>Message Type:</em> 0x0001</td>
|
|
<!-- Object Header Message Length -->
|
|
<td colspan="2"><em>Message Data Size:</em> 8</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Flags -->
|
|
<td><em>Flags:</em> 0x00</td>
|
|
<!-- Reserved -->
|
|
<td colspan="3"><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Version -->
|
|
<td><em>Version:</em> 1</td>
|
|
<!-- Rank -->
|
|
<td><em>Rank:</em> 0 (Scalar)</td>
|
|
<!-- Flags -->
|
|
<td><em>Flags:</em> 0x00 (No maximum dimensions, no permutation information)</td>
|
|
<!-- Reserved -->
|
|
<td><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Reserved -->
|
|
<td colspan="4"><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<!-- Layout Header Message -->
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<caption align="top"><em>Layout Header Message</em></caption>
|
|
<tr align="center">
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Type -->
|
|
<td colspan="2"><em>Message Type:</em> 0x0008</td>
|
|
<!-- Object Header Message Length -->
|
|
<td colspan="2"><em>Message Data Size:</em> 24</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Flags -->
|
|
<td><em>Flags:</em> 0x00</td>
|
|
<!-- Reserved -->
|
|
<td colspan="3"><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Version -->
|
|
<td><em>Version:</em> 1</td>
|
|
<!-- Rank -->
|
|
<td><em>Rank:</em> 1 (Dataspace rank+1)</td>
|
|
<!-- Class -->
|
|
<td><em>Class:</em> 1 (Contiguous)</td>
|
|
<!-- Reserved -->
|
|
<td><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Reserved -->
|
|
<td colspan="4"><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Address -->
|
|
<td colspan="4"><br><em>Address:</em> 0xffffffffffffffff (Undefined)<br><br></td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Layout Dimensions -->
|
|
<td colspan="4"><em>Dimension 0 Size:</em> 4 (Datatype size)</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Message alignment filler -->
|
|
<td colspan="4"><em>Message Alignment Filler:</em> -</td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<!-- Modification Date & Time Header Message -->
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<caption align="top"><em>Modification Date & Time Header Message</em></caption>
|
|
<tr align="center">
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Type -->
|
|
<td colspan="2"><em>Message Type:</em> 0x0012</td>
|
|
<!-- Object Header Message Length -->
|
|
<td colspan="2"><em>Message Data Size:</em> 8</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Object Header Message Flags -->
|
|
<td><em>Flags:</em> 0x00</td>
|
|
<!-- Reserved -->
|
|
<td colspan="3"><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Version -->
|
|
<td><em>Version:</em> 1</td>
|
|
<!-- Reserved -->
|
|
<td colspan="3"><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<!-- Modification time -->
|
|
<td colspan="4"><em>Seconds Since Epoch:</em> 1052401700 (2003-05-08 08:48:20 CDT)</td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
<!-- Null Header Message -->
|
|
<tr align="center">
|
|
<td colspan="4">
|
|
<table border="" width="100%">
|
|
<caption align="top"><em>Null Header Message</em></caption>
|
|
<tr align="center">
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
<th width="25%"></th>
|
|
</tr>
|
|
<tr align="center">
|
|
<td colspan="2"><em>Message Type:</em> 0x0000</td>
|
|
<td colspan="2"><em>Message Data Size:</em> 144</td>
|
|
</tr>
|
|
<tr align="center">
|
|
<td><em>Flags:</em> 0x00</td>
|
|
<td colspan="3"><em>Reserved:</em> 0</td>
|
|
</tr>
|
|
</table>
|
|
</td>
|
|
</tr>
|
|
</table>
|
|
|
|
\code
|
|
%h5debug example2.h5 976
|
|
|
|
New address: 976
|
|
Reading signature at address 976 (rel)
|
|
Object Header...
|
|
Dirty: 0
|
|
Version: 1
|
|
Header size (in bytes): 16
|
|
Number of links: 1
|
|
Number of messages (allocated): 6 (32)
|
|
Number of chunks (allocated): 1 (8)
|
|
Chunk 0...
|
|
Dirty: 0
|
|
Address: 992
|
|
Size in bytes: 256
|
|
Message 0...
|
|
Message ID (sequence number): 0x0005 `fill_new' (0)
|
|
Shared: No
|
|
Constant: Yes
|
|
Raw size in obj header: 8 bytes
|
|
Chunk number: 0
|
|
Message Information:
|
|
Version: 1
|
|
Space Allocation Time: Late
|
|
Fill Time: On Allocation
|
|
Fill Value Defined: Undefined
|
|
Size: 0
|
|
Data type: <dataset type="">
|
|
Message 1...
|
|
Message ID (sequence number): 0x0003 data_type(0)
|
|
Shared message: No
|
|
Constant: Yes
|
|
Raw size in obj header: 16 bytes
|
|
Chunk number: 0
|
|
Message Information:
|
|
Type class: integer
|
|
Size: 4 bytes
|
|
Byte order: little endian
|
|
Precision: 32 bits
|
|
Offset: 0 bits
|
|
Low pad type: zero
|
|
High pad type: zero
|
|
Sign scheme: 2's comp
|
|
Message 2...
|
|
Message ID (sequence number): 0x0001 simple_dspace(0)
|
|
Shared message: No
|
|
Constant: No
|
|
Raw size in obj header: 8 bytes
|
|
Chunk number: 0
|
|
Message Information:
|
|
Rank: 0
|
|
Message 3...
|
|
Message ID (sequence number): 0x0008 layout(0)
|
|
Shared message: No
|
|
Constant: No
|
|
Raw size in obj header: 24 bytes
|
|
Chunk number: 0
|
|
Message Information:
|
|
Data address: UNDEF
|
|
Number of dimensions: 1
|
|
Size: {4}
|
|
Message 4...
|
|
Message ID (sequence number): 0x0012 mtime_new(0)
|
|
Shared message: No
|
|
Constant: No
|
|
Raw size in obj header: 8 bytes
|
|
Chunk number: 0
|
|
Message Information:
|
|
Time: 2003-03-05 14:52:00 CST
|
|
Message 5...
|
|
Message ID (sequence number): 0x0000 null(0)
|
|
Shared message: No
|
|
Constant: No
|
|
Raw size in obj header: 144 bytes
|
|
Chunk number: 0
|
|
Message Information:
|
|
<no info="" for="" this="" message="">
|
|
\endcode
|
|
|
|
<hr>
|
|
Navigate back: \ref index "Main" / \ref TN
|
|
|
|
*/
|
|
|