Commit Graph
23919 Commits
Author SHA1 Message Date
jhendersonHDF fc3b3e7bbb Fix segfault in H5S__get_select_hyper_blocklist() (#5353) 2025-03-18 11:06:36 -05:00
Allen Byrne 1602e1fbfe Remove autotools files and docs (#5358) 2025-03-14 13:28:44 -05:00
Atri Bhattacharya 41a7ef8e1e Fixes for compiler wrappers and cmake config file dirs. (#5361)
* h5cc: Fix location of settings and pkgconfig files

In h5cc and other compiler wrappers, drop hardcoded 'lib' as the dir for
libhdf5.settings and pkgconfig scripts and use cmake computed values for
HDF5_INSTALL_LIB_DIR. This fixes issues on systems where the libdir is
'lib64' for instance, as on 64-bit Linux OSes, and 'lib' in the
wrappers point to incorrect locations of the settings and pkgconfig
files.

* h5cc: Drop -show from output when calling command.

When calling `h5cc -show FOO`, the output should not repeat the '-show'
argument itself. This commit fixes the '-show' command invoked from a
cmake built h5cc to be consistent with an (previously) autotools built
one.
final_autotools_develop
2025-03-12 13:17:41 -05:00
Matt L 4b609617f6 Close attribute after shared attr dtype test (#5360) 2025-03-12 13:17:02 -05:00
jhendersonHDF 5e32f15352 Fix two assertion failures in hyperslab code (#5355) 2025-03-07 16:54:53 -06:00
Markus Mützel b09008ea03 Define __STDC_WANT_IEC_60559_TYPES_EXT__ before including other headers (#5356)
Some standard headers might implicitly include `float.h`. If that happens
before `__STDC_WANT_IEC_60559_TYPES_EXT__` is defined, the macros that
are needed for the `_Float16` data type (like `FLT16_MAX`) might not be
defined.

That is happening with mingw-w64 headers since the following change: https://github.com/mingw-w64/mingw-w64/commit/b40b6a021dcb6c2396e248e22f682b7bd2599d7a

Define `__STDC_WANT_IEC_60559_TYPES_EXT__` before including other headers
in `H5private.h` to make that scenario less likely.
2025-03-07 12:48:46 -06:00
Allen Byrne 3448276452 Fix last linkcheck issues and linkchecker must pass (#5350)
* Ignore warnings so only errors fail
2025-03-04 09:35:40 -06:00
Allen Byrne 0b55bcd98d Change md file links to correct locations (#5349) 2025-03-03 15:00:44 -06:00
jhendersonHDF d366d72830 Update API tests README.md with current information (#5348) 2025-03-03 15:00:25 -06:00
Scot Breitenfeld 352501a5bd fix for cray compiler failing test (#5347) 2025-03-03 14:11:00 -06:00
Allen Byrne 5b97d18915 Correct references to groups in RM (#5340) 2025-03-03 14:06:08 -06:00
Dana Robinson 43805ff475 Fix an oversize allocation in t_bigio on 32-bit systems (#5344)
* Fix an oversize allocation in t_bigio on 32-bit systems

A test in t_bigio.c attempts to allocate more than 4 GiB of memory,
which will overflow (and wrap) the size_t type on 32-bit systems,
creating a very small allocation instead of a very large allocation.
The test then segfaults when it accesses memory outside of  the small
buffer.

The test has been fixed by limiting the buffer to 2 GiB on 32-bit
systems.
2025-03-03 11:17:08 -06:00
dependabot[bot] 27fece61c8 Bump the github-actions group with 4 updates (#5343) 2025-03-03 07:36:10 -06:00
Scot Breitenfeld 0e3f1010f1 Update AOCC and OpenMPI versions (#5341) 2025-03-01 07:05:47 -06:00
Scot Breitenfeld 70a90fad2d * updated nvhpc version (#5339)
* Removed skipping dtransform
2025-02-28 07:54:23 -06:00
Matt L 07030271ee Fix objects not being closed on objcopy helper failure (#5331) 2025-02-27 10:19:57 -06:00
Allen Byrne d81ae5586a Add presets cookbook and use cases (#5323)
* RPM has issue with packaging RPM of a parallel library
2025-02-27 09:58:03 -06:00
Allen Byrne 9ae41641ff Add a readme file to workflows (#5334) 2025-02-26 10:56:09 -06:00
Lori Cooper 6742c56642 Adding Autotools Drop announcement to Readme (#5335)
Also added some fun formatting for the 2.0.0 announcement since it was just hanging out there.
2025-02-26 08:17:12 -06:00
Allen Byrne b26089af1b Fix the HL H5TB fill-info #5332 (#5333) 2025-02-25 14:38:19 -06:00
Mark C. Miller 50d6458e1d Fix H5S_MAX_RANK doc (#5328)
The H5S_MAX_RANK is the maximum number of dimensions in a dataset or an array datatype.
2025-02-21 09:23:14 -06:00
bmribler d35d1ecce8 Add release information to enum constants - Part 4 (#5309)
Added \since to enum constants added in 1.14.x versions

* Changed for back-ported releases
2025-02-18 11:23:22 -06:00
Allen Byrne 409f738e9d Translate release-specific changes docs to doxygen (#5314) 2025-02-18 11:21:27 -06:00
Allen Byrne 45e042c0bc Fix tag typo (#5321)
* Check if snapshot is tag name and adjust tag to add v to a number tag
2025-02-18 10:42:22 -06:00
Matt L e07da0c772 Fix bad objcopy test cleanup on failure (#5320) 2025-02-17 11:46:26 -06:00
Allen Byrne 255371c8e4 Fix the release workflow by copying before rename (#5319)
* Only copy files if not snapshot

* Move sequence to copy before rename
2025-02-17 11:45:06 -06:00
Allen Byrne d4200dc689 Fix the rpath with option - plugins fail without (#5298)
* Only need loader_path
2025-02-14 16:07:04 -06:00
Allen Byrne 2f4f6902cd Use only one find_package call for zlib. (#5280) 2025-02-14 11:22:23 -06:00
Scot BreitenfeldandMichael Breitenfeld dbbc7122df Cray cce/18.0.1 work-around (#5313)
Co-authored-by: Michael Breitenfeld <brtnfld@login04.frontier.olcf.ornl.gov>
2025-02-12 09:11:10 -06:00
Allen Byrne aa02a83ba3 Correct the version of zlib used by plugins (#5311) 2025-02-11 08:44:01 -06:00
jhendersonHDF d48af25a96 Move TestAlarmOn()/TestAlarmOff() back into PerformTests() (#5307)
Moves call to TestAlarmOn() in testframe framework back into
the PerformTests() function due to the timing of when the
framework processes command-line arguments
2025-02-10 15:23:54 -06:00
Allen Byrne d667869991 Update files based on issues discovered during release (#5294) 2025-02-10 07:43:59 -06:00
Gerd Heber c41063df63 Add pkg-config. (#5304) 2025-02-10 07:37:41 -06:00
Neil Fortnerandgithub-actions 61aa40f3fb Fix error in H5Ddebug() (#5299)
* Fix error in H5Ddebug(). Add h5ls test cases.

* Committing clang-format changes

* Fix cmake (hopefully)

* Fix cmake again (hopefully)

* Fix issue with modification times showing up differently on different
systems. Add test case for v1 b-trees.

* Add cmake for new tests

* Add RELEASE.txt entry

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2025-02-07 16:40:55 -06:00
jhendersonHDF e8760978c9 Fix segfault in H5Scombine_select (#5296)
Checks for a hyperslab selection in the resulting dataspace before
attempting to set a hyperslab-specific field
2025-02-07 09:44:01 -06:00
jhendersonHDF 354994a91a Minor adjustments to usage of alarm(2) timer in tests (#5292)
Make alarm(2) timer per-test program rather than per-subtest

Avoid enabling alarm(2) timer when TestExpress is set to 0
2025-02-05 14:27:11 -06:00
Gerd Heber e9ab45f0f4 Updates/2025 02 04 (#5289) 2025-02-04 14:45:01 -06:00
dependabot[bot] aace3c464b Bump the github-actions group with 3 updates (#5288) 2025-02-02 23:05:58 -06:00
jhendersonHDF fba198e148 Add new -testexpress option to testframe testing framework (#5286)
Adds new -testexpress command-line option to the testframe testing
framework to allow setting or overriding of the TestExpress level
at runtime

Adds macros for the different currently defined TestExpress levels
2025-01-31 20:11:48 -06:00
Harmen Stoppels 55bfec8f41 cmake: remove outdated rpath handling (#5271) 2025-01-29 08:48:25 -06:00
Allen Byrne 1725a2b463 Continue an ABI error for java too. (#5282)
* Add the hl-cpp report
2025-01-29 08:47:16 -06:00
Scot Breitenfeld 4104e06b9b update the release schedule (#5275) 2025-01-27 17:13:15 -06:00
Allen Byrne 63e02ae8d4 Correct versions for plugins (#5281) 2025-01-27 11:08:41 -06:00
Ted Lyngmo 985df02283 Fix a few illegal pointer usages (#5279) 2025-01-25 22:54:47 -06:00
bmribler 99aac48336 Fixed allocation-size-too-big error in H5MM.c (#5076)
A decoded length appeared to be corrupted and had a very large value.
This PR added a check to detect such potential data corruption.
2025-01-25 18:54:09 -06:00
Allen Byrne 1f62484a93 Updates for updated filters (#5269) 2025-01-24 11:03:03 -06:00
Dana Robinson 455601a0c9 Simplify the .gitattributes file (#5268)
* Removes all per-file attributes, many of which were incorrectly
  removing the text attribute from text/source files
* Removes all svneol attributes (not sure where those came from, but
  they don't appear in the git attributes docs)
* Marks *.h5 and certain test files as binary
* Removes the !eol attribute, which is unnecessary given text=auto
  and default git text handling
2025-01-24 08:31:35 -06:00
Matt L 331c000e6a Add H5Tdecode2, rename and deprecate H5Tdecode (#5213) 2025-01-24 08:13:43 -06:00
Gerd Heber 77e21758d9 Update Dockerfile (#5267)
Added Ninja build tool.
2025-01-24 07:14:14 -06:00
Allen Byrne d84337ad8c Fix codespell issues (#5256) 2025-01-21 17:36:27 -06:00