Commit Graph
157 Commits
Author SHA1 Message Date
Allen Byrne c7ffe683e5 Primary change is HDFFV-11212 - new refs and JNI (#372)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
2021-02-25 15:12:57 -06:00
Sean McBrideandLarry Knox c29e1b9fdf Patches from vtk (#358)
* Drop the export attribute on forward declaration

They don't mean anything on forward declarations anyways.

* Fixed -Wunused-parameter warnings in some C++ files

Allowed all the attribute #defines to work in C++ also.

* Fixed -Wunused-variable warnings by removing dead code

* Fixed all -Wshorten-64-to-32 warnings by adjusting casts

There was no truncation in fact, since the unsigned result was upcast to size_t then implicitly downcast to uint32_t.

* Fixed all -Wcomma warnings by spliting statements onto own lines

* Fixed all -Wself-assign warnings with different unused param suppression

* Fixed all -Wextra-semi warnings

* Fixed all -Wswitch-enum warnings

Just added new explicit cases with the existing default case.

* Fixed all -Wmissing-prototypes warnings

Just made functions static. Moved them into an extern "C" block.

* Reformatted source with bin/format_source using clang version 10.0.1

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-02-25 12:15:02 -06:00
Larry Knox 2ea165efd0 Update license url part2 (#333)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
    file - files not in src or test.
2021-02-17 08:52:36 -06:00
Allen Byrne 6db183590f develop revert source to clang-format version 11 (#293)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction
2021-01-29 06:55:18 -06:00
Quincey Koziol 5ff09ae971 Basic alignment with async branch (#115)
* Basic alignment with async branch - trivial changes to reduce clutter in overall diff.

* Update minor error code to reflect change within library

* Update the error output to match library
2020-11-23 10:18:26 -06:00
Allen Byrne b2d661b508 Clang-format of source files 2020-09-30 09:27:10 -05:00
Allen Byrne ff4a9d0ec2 Warnings reduction in tools 2020-07-30 11:26:14 -05:00
Allen Byrne bac0fc6309 Tools refactor
Move error_stack setup to tools library
Add structure for h5dump properties
Eliminate duplicated h5diff functions
Use properties structure in place of argument lists.
2020-07-15 11:20:16 -05:00
Allen Byrne c5e2d97573 Small fixes for tools and skip autotools tests for no filter 2020-01-29 15:39:25 -06:00
David Young fa1b2f6ef3 Reduce differences between my -Werror branch and develop:
Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC
shadowed declaration warnings about index(3).

Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's
H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
2020-01-28 20:35:28 -06:00
Dana Robinson 15a1bce9a2 Merge pull request #2304 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:isnan_fixes to develop
* commit '8b4d774eb9bb95cb3c59f033b43ed9fba340a54a':
  Replaced my_isnan with C99 isnan in h5diff.
2020-01-28 02:44:07 -06:00
Dana Robinson 8b4d774eb9 Replaced my_isnan with C99 isnan in h5diff. 2020-01-23 20:12:16 -08:00
Dana Robinson 9475ee5d59 Optimized the floating point comparisons a little bit. 2020-01-23 19:12:24 -08:00
Dana Robinson a85e4a75b2 Fix for failing h5diff tests involving floating-point compares. 2020-01-23 18:58:08 -08:00
kmu 838d4ec56b squash cast warning fix 2020-01-23 15:12:00 -06:00
Allen Byrne ee1fa14066 Change tools debug macros to not use error stack 2020-01-23 10:20:34 -06:00
kmu 04a2d20bba fix float type cmp warning 2020-01-22 12:55:01 -06:00
Dana Robinson a92c735c9b Squashed commit of the token_refactoring branch: 2020-01-16 13:29:34 -08:00
Allen Byrne 341600b4a6 Update tools hid_t declarations with H5I_INVALID_HID 2020-01-13 17:10:09 -06:00
Jordan Henderson 1795aa660a Clean up tools warnings introduced by H5TOOLS_ERR_INIT macro 2019-12-30 18:02:06 -06:00
Jordan Henderson 2cbf31cb3a Refactor tools library error handling macros 2019-12-28 14:08:04 -06:00
Allen Byrne de0f667076 Fix compile statement order 2019-12-20 14:18:01 -06:00
Allen Byrne 23f813026f HDFFV-10976,-10980 Init obj_type before calling H5Rget_obj_type3 2019-12-20 13:23:48 -06:00
Allen Byrne 628c63f125 HDFFV-10980 - h5diff uses new ref APIs 2019-12-19 16:29:43 -06:00
Allen Byrne 7225519e2a Revert declaration used in macro. 2019-12-07 08:38:06 -06:00
Allen Byrne fce2a31dc5 Address compile warnings 2019-12-06 13:55:34 -06:00
Allen Byrne 7e92c2e3e5 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '0772b975d1d2bfa15aedeb4b6e2c2aac78c61a2f':
  Fix missing free in H5T__ref_mem_read()
  Fix bugs in H5VL file comparison code.  Add short circuit success to H5VL_cmp_connector_cls().
  Implement file comparison VOL callback.  Other changes to allow references to work with non-native connectors.  There is a bug somewhere.
  Add support for point selections to H5S_select_project_intersection.
  Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
  Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)"
  Revert "Oops, remove more C99 designated initializers for VS 2010 compatibility."
  H5R: fix H5Tconv to check for null references
  Trivial parameter renaming in VOL API calls.
  Move checking for zero offset in selection adjust calls to the selection callbacks.  This makes the procedure for checking it consistent across selection types and between _s and _u, ensures it is always is performed even when called within the H5S package, and removes the redundant check that would occur when callins H5S_select_adjust_s() from outside the H5S package.
  Replace H5Sselect_adjust_u() and H5Shyper_adjust_s() with H5Sselect_adjust.  Implement "adjust_s" callback for all selection types.  Add range checking to H5Sselect_adjust().
2019-12-02 08:00:20 -06:00
David Young 0108072f7a Revert "Make a squash commit of 'Quiet some warnings by adjusting warnings level and fixing some code.' (commit 5c911d8baf)" 2019-11-27 11:26:02 -06:00
Allen Byrne dcae4544a3 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'a8892bb42d6f6e4fbc30fae0eb2b957f81c938b9': (45 commits)
  Oops, remove more C99 designated initializers for VS 2010 compatibility.
  Add an #include to get a function declaration.
  Don't use C99 designated initializers, they're not compatible with Visual Studio 2010.
  Quiet some more maybe-uninitialized warnings---each is a false positive, *sigh*.  This is more code that may not compile with VS2010, *sigh sigh*.
  Always warn on maybe-uninitialized.  -Wincompatible-pointer-types was not available until GCC 5, so enable it only if that's the GCC version we're using.
  Only promote maybe-uninitialized warnings to errors on GCC 8.  Even on GCC 8, there may be false positives at low optimization levels?  I need to check.
  Only use -Werror=cast-function-type with GCC 8 and later.
  Put all of the -W options back into the order I found them in so that it's easier to compare old and new config/gnu-flags.
  Add new source files to CMakeLists.txt.
  Mention the -Werror= flags in libhdf5.settings.in.
  free -> HDfree
  Promote decleration-after-statement warnings to errors.
  Quiet decleration-after-statement warnings.
  Move a statement under some declarations since some vintages of Visual Studio don't like declarations after statements.
  Document H5D__chunk_mem_xfree_wrapper().
  Undo accidental test deletion.
  Oops, delete a debug printf that snuck in here.
  Undo my changes to the HD macros, hadn't really intended those to be on this branch....
  Make errors of some more warnings.  Move disabled warnings to DEVELOPER_WARNING_CFLAGS.  Put just one warning option on a line, and sort some of the options.
  Cast to the parameter type, H5VL_token_t *, instead of to unsigned char *.
  ...
2019-11-25 18:21:14 -06:00
David Young 77a9806ab5 Demote errors to warnings for a couple of unused-but-set variables that
I cannot untangle right now.
2019-11-13 11:26:49 -06:00
Allen Byrne 6b927a773c HDFFV-10876 Update h5dump and h5ls for new ref api. 2019-11-07 09:49:11 -06:00
Quincey Koziol db7c43d375 Updates to warnhist script, along with a few cleanups, and add some comments
to warning cleanups that are a bit obscure.
2019-07-09 22:15:36 -05:00
Quincey Koziol 3b594992d6 Add support for GCC9, update warnhist script, and clean up warnings. 2019-07-02 23:43:45 -05:00
Quincey Koziol d5130bb573 Updated configure & CMake compiler flags for GCC 8.x, along with corresponding
changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
2019-06-28 09:10:43 -05:00
Quincey Koziol 1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them,
clean up warnings.
2019-06-21 10:05:34 -05:00
Vailin Choi b178d80be0 Changes made based on feedback from pull request #1039. 2018-05-14 12:26:48 -05:00
Vailin Choi e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne 8e30e7eb19 Avoid double free 2017-10-19 16:51:43 -05:00
Allen Byrne 78a5870680 Fix error handling issues 2017-10-17 16:13:12 -05:00
Allen Byrne 2cbdf46cb9 HDFFV-10297 add h5copy test and fix h5diff errors 2017-10-16 17:26:23 -05:00
Allen Byrne d5c073d406 HDFFV-10296 Update tools lib to use the error handling macros. 2017-10-13 16:34:01 -05:00
Allen Byrne 68a9844991 VS2012 and earlier cannot have execute stmnts before declare 2017-10-03 12:34:54 -05:00
Allen Byrne 33812aee4c Fix merge typos 2017-09-11 12:44:00 -05:00
Allen Byrne 77313a1d39 HDFFV-9774 Fix code merge 2017-09-08 16:52:00 -05:00
Allen Byrne e790a0b42d HDFFV-10246 Add check for string not null before use 2017-07-25 15:15:20 -05:00
Dana Robinson 946fd98b8d Fixed many minor warnings. 2017-05-25 06:45:53 -04:00
Allen Byrne 4f0b92bdd5 HDFFV-10128 Fixed string length with no null fixed 2017-05-16 09:28:49 -05:00
Allen Byrne 56c3ec9820 HDFFV-10128 add test to check null term
Test is another dataset
2017-05-15 12:33:58 -05:00
Allen Byrne 7078993d63 HDFFV-10128 Fix null term strings 2017-05-12 14:40:39 -05:00
Larry Knox 89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00