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Primary change is HDFFV-11212 - new refs and JNI (#372)

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* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
This commit is contained in:
Allen Byrne
2021-02-25 15:12:57 -06:00
committed by GitHub
parent c29e1b9fdf
commit c7ffe683e5
123 changed files with 2671 additions and 1300 deletions
Download Patch File Download Diff File Expand all files Collapse all files
.clang-format
+1 -1
View File
@@ -1,10 +1,10 @@
---
Language: Cpp
BasedOnStyle: LLVM
AlignConsecutiveMacros: true
AlignConsecutiveAssignments: true
#llvm11: AlignConsecutiveBitFields: false
AlignConsecutiveDeclarations: true
AlignConsecutiveMacros: true
#llvm10-11: AlignOperands: true - Align
#llvm11: AllowShortEnumsOnASingleLine: true
AlwaysBreakAfterReturnType: AllDefinitions
MANIFEST
+3
View File
@@ -2019,6 +2019,7 @@
./tools/testfiles/tintsnodata.h5
./tools/testfiles/tlarge_objname.ddl
./tools/testfiles/tlarge_objname.h5
./tools/testfiles/tldouble.ddl
./tools/testfiles/tldouble.h5
./tools/testfiles/tlonglinks.ddl
./tools/testfiles/tlonglinks.h5
@@ -3428,6 +3429,7 @@
./java/test/testfiles/JUnit-TestH5Pvirtual.txt
./java/test/testfiles/JUnit-TestH5PL.txt
./java/test/testfiles/JUnit-TestH5R.txt
./java/test/testfiles/JUnit-TestH5Rref.txt
./java/test/testfiles/JUnit-TestH5Sbasic.txt
./java/test/testfiles/JUnit-TestH5S.txt
./java/test/testfiles/JUnit-TestH5Tparams.txt
@@ -3468,6 +3470,7 @@
./java/test/TestH5Pvirtual.java
./java/test/TestH5PL.java
./java/test/TestH5R.java
./java/test/TestH5Rref.java
./java/test/TestH5Sbasic.java
./java/test/TestH5S.java
./java/test/TestH5Tparams.java
java/examples/datasets/H5Ex_D_Alloc.java
+5 -5
View File
@@ -65,11 +65,11 @@ public class H5Ex_D_Alloc {
}
private static void allocation() {
long file_id = -1;
long filespace_id = -1;
long dataset_id1 = -1;
long dataset_id2 = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id1 = HDF5Constants.H5I_INVALID_HID;
long dataset_id2 = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
int space_status = 0;
java/examples/datasets/H5Ex_D_Checksum.java
+7 -7
View File
@@ -93,10 +93,10 @@ public class H5Ex_D_Checksum {
}
private static void writeChecksum() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -193,9 +193,9 @@ public class H5Ex_D_Checksum {
}
private static void readChecksum() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
java/examples/datasets/H5Ex_D_Chunk.java
+8 -8
View File
@@ -66,10 +66,10 @@ public class H5Ex_D_Chunk {
}
private static void writeChunk() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -201,10 +201,10 @@ public class H5Ex_D_Chunk {
}
private static void readChunk() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
java/examples/datasets/H5Ex_D_Compact.java
+8 -8
View File
@@ -60,10 +60,10 @@ public class H5Ex_D_Compact {
}
private static void writeCompact() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -163,10 +163,10 @@ public class H5Ex_D_Compact {
}
private static void readCompact() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file and dataset using the default properties.
java/examples/datasets/H5Ex_D_External.java
+7 -7
View File
@@ -34,10 +34,10 @@ public class H5Ex_D_External {
private static final int NAME_BUF_SIZE = 32;
private static void writeExternal() {
long file_id = -1;
long dcpl_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -138,9 +138,9 @@ public class H5Ex_D_External {
}
private static void readExternal() {
long file_id = -1;
long dcpl_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
String[] Xname = new String[1];
java/examples/datasets/H5Ex_D_FillValue.java
+4 -4
View File
@@ -40,10 +40,10 @@ public class H5Ex_D_FillValue {
private static final int FILLVAL = 99;
private static void fillValue() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
java/examples/datasets/H5Ex_D_Gzip.java
+7 -7
View File
@@ -95,10 +95,10 @@ public class H5Ex_D_Gzip {
}
private static void writeGzip() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -196,9 +196,9 @@ public class H5Ex_D_Gzip {
}
private static void readGzip() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
java/examples/datasets/H5Ex_D_Hyperslab.java
+7 -7
View File
@@ -34,9 +34,9 @@ public class H5Ex_D_Hyperslab {
private static final int RANK = 2;
private static void writeHyperslab() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -142,10 +142,10 @@ public class H5Ex_D_Hyperslab {
}
private static void readHyperslab() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
java/examples/datasets/H5Ex_D_Nbit.java
+8 -8
View File
@@ -96,11 +96,11 @@ public class H5Ex_D_Nbit {
}
private static void writeData() throws Exception {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dtype_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dtype_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -157,9 +157,9 @@ public class H5Ex_D_Nbit {
}
private static void readData() throws Exception {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
java/examples/datasets/H5Ex_D_ReadWrite.java
+5 -5
View File
@@ -32,9 +32,9 @@ public class H5Ex_D_ReadWrite {
private static final int RANK = 2;
private static void WriteDataset() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -109,8 +109,8 @@ public class H5Ex_D_ReadWrite {
}
private static void ReadDataset() {
long file_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file using the default properties.
java/examples/datasets/H5Ex_D_Shuffle.java
+7 -7
View File
@@ -122,10 +122,10 @@ public class H5Ex_D_Shuffle {
}
private static void writeShuffle() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -229,9 +229,9 @@ public class H5Ex_D_Shuffle {
}
private static void readShuffle() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
java/examples/datasets/H5Ex_D_Sofloat.java
+7 -7
View File
@@ -96,10 +96,10 @@ public class H5Ex_D_Sofloat {
}
private static void writeData() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
double[][] dset_data = new double[DIM_X][DIM_Y];
@@ -213,9 +213,9 @@ public class H5Ex_D_Sofloat {
}
private static void readData() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
double[][] dset_data = new double[DIM_X][DIM_Y];
// Open file using the default properties.
java/examples/datasets/H5Ex_D_Soint.java
+7 -7
View File
@@ -96,10 +96,10 @@ public class H5Ex_D_Soint {
}
private static void writeData() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -195,9 +195,9 @@ public class H5Ex_D_Soint {
}
private static void readData() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open file using the default properties.
java/examples/datasets/H5Ex_D_Szip.java
+7 -7
View File
@@ -95,10 +95,10 @@ public class H5Ex_D_Szip {
}
private static void writeSzip() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -196,9 +196,9 @@ public class H5Ex_D_Szip {
}
private static void readSzip() {
long file_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file.
java/examples/datasets/H5Ex_D_Transform.java
+7 -7
View File
@@ -36,10 +36,10 @@ public class H5Ex_D_Transform {
private static String RTRANSFORM = "x-1";
private static void writeData() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long dxpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dxpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
@@ -144,9 +144,9 @@ public class H5Ex_D_Transform {
private static void readData() {
long file_id = -1;
long dataset_id = -1;
long dxpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dxpl_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset_data = new int[DIM_X][DIM_Y];
// Open an existing file using the default properties.
java/examples/datasets/H5Ex_D_UnlimitedAdd.java
+10 -10
View File
@@ -39,10 +39,10 @@ public class H5Ex_D_UnlimitedAdd {
private static final int NDIMS = 2;
private static void writeUnlimited() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
@@ -143,9 +143,9 @@ public class H5Ex_D_UnlimitedAdd {
}
private static void extendUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
long[] start = { 0, 0 };
@@ -293,9 +293,9 @@ public class H5Ex_D_UnlimitedAdd {
}
private static void readUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data;
java/examples/datasets/H5Ex_D_UnlimitedGzip.java
+11 -11
View File
@@ -99,10 +99,10 @@ public class H5Ex_D_UnlimitedGzip {
}
private static void writeUnlimited() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
@@ -200,9 +200,9 @@ public class H5Ex_D_UnlimitedGzip {
}
private static void extendUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
long[] start = { 0, 0 };
@@ -350,10 +350,10 @@ public class H5Ex_D_UnlimitedGzip {
}
private static void readUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data;
java/examples/datasets/H5Ex_D_UnlimitedMod.java
+10 -10
View File
@@ -39,10 +39,10 @@ public class H5Ex_D_UnlimitedMod {
private static final int NDIMS = 2;
private static void writeUnlimited() {
long file_id = -1;
long dcpl_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] chunk_dims = { CHUNK_X, CHUNK_Y };
long[] maxdims = { HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED };
@@ -143,9 +143,9 @@ public class H5Ex_D_UnlimitedMod {
}
private static void extendUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
long[] extdims = { EDIM_X, EDIM_Y };
int[][] dset_data;
@@ -279,9 +279,9 @@ public class H5Ex_D_UnlimitedMod {
}
private static void readUnlimited() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data;
java/examples/datatypes/H5Ex_T_Array.java
+9 -9
View File
@@ -34,11 +34,11 @@ public class H5Ex_T_Array {
private static final int NDIMS = 2;
private static void CreateDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data = new int[DIM0][ADIM0][ADIM1];
@@ -152,10 +152,10 @@ public class H5Ex_T_Array {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data;
java/examples/datatypes/H5Ex_T_ArrayAttribute.java
+12 -12
View File
@@ -35,12 +35,12 @@ public class H5Ex_T_ArrayAttribute {
private static final int NDIMS = 2;
private static void CreateDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data = new int[DIM0][ADIM0][ADIM1];
@@ -84,7 +84,7 @@ public class H5Ex_T_ArrayAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -175,11 +175,11 @@ public class H5Ex_T_ArrayAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
long[] adims = { ADIM0, ADIM1 };
int[][][] dset_data;
java/examples/datatypes/H5Ex_T_Bit.java
+6 -6
View File
@@ -32,9 +32,9 @@ public class H5Ex_T_Bit {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -116,9 +116,9 @@ public class H5Ex_T_Bit {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;
java/examples/datatypes/H5Ex_T_BitAttribute.java
+9 -9
View File
@@ -33,10 +33,10 @@ public class H5Ex_T_BitAttribute {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -66,7 +66,7 @@ public class H5Ex_T_BitAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -139,10 +139,10 @@ public class H5Ex_T_BitAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;
java/examples/datatypes/H5Ex_T_Commit.java
+6 -6
View File
@@ -101,9 +101,9 @@ public class H5Ex_T_Commit {
}
private static void CreateDataType() {
long file_id = -1;
long strtype_id = -1;
long filetype_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
Sensor_Datatype datatypes = new Sensor_Datatype();
// Create a new file using default properties.
try {
@@ -183,9 +183,9 @@ public class H5Ex_T_Commit {
}
private static void ReadDataType() {
long file_id = -1;
long typeclass_id = -1;
long filetype_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long typeclass_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
// Open an existing file.
try {
java/examples/datatypes/H5Ex_T_Compound.java
+11 -11
View File
@@ -122,12 +122,12 @@ public class H5Ex_T_Compound {
}
private static void CreateDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data = new Sensor[DIM0];
byte[] dset_data = null;
@@ -286,11 +286,11 @@ public class H5Ex_T_Compound {
}
private static void ReadDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data2;
byte[] dset_data;
java/examples/datatypes/H5Ex_T_CompoundAttribute.java
+14 -14
View File
@@ -125,13 +125,13 @@ public class H5Ex_T_CompoundAttribute {
}
private static void CreateDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data = new Sensor[DIM0];
byte[] dset_data = null;
@@ -205,7 +205,7 @@ public class H5Ex_T_CompoundAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -310,12 +310,12 @@ public class H5Ex_T_CompoundAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long strtype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long strtype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
Sensor[] object_data2;
byte[] dset_data;
java/examples/datatypes/H5Ex_T_Float.java
+6 -6
View File
@@ -36,9 +36,9 @@ public class H5Ex_T_Float {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data = new double[DIM0][DIM1];
@@ -120,9 +120,9 @@ public class H5Ex_T_Float {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data;
java/examples/datatypes/H5Ex_T_FloatAttribute.java
+9 -9
View File
@@ -37,10 +37,10 @@ public class H5Ex_T_FloatAttribute {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data = new double[DIM0][DIM1];
@@ -66,7 +66,7 @@ public class H5Ex_T_FloatAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -139,10 +139,10 @@ public class H5Ex_T_FloatAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
double[][] dset_data;
java/examples/datatypes/H5Ex_T_Integer.java
+6 -6
View File
@@ -34,9 +34,9 @@ public class H5Ex_T_Integer {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -117,9 +117,9 @@ public class H5Ex_T_Integer {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;
java/examples/datatypes/H5Ex_T_IntegerAttribute.java
+9 -9
View File
@@ -35,10 +35,10 @@ public class H5Ex_T_IntegerAttribute {
private static final int RANK = 2;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data = new int[DIM0][DIM1];
@@ -64,7 +64,7 @@ public class H5Ex_T_IntegerAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -137,10 +137,10 @@ public class H5Ex_T_IntegerAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0, DIM1 };
int[][] dset_data;
java/examples/datatypes/H5Ex_T_ObjectReference.java
+12 -12
View File
@@ -65,11 +65,11 @@ public class H5Ex_T_ObjectReference {
}
private static void writeObjRef() {
long file_id = -1;
long dataspace_id = -1;
long filespace_id = -1;
long group_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][8];
@@ -90,9 +90,9 @@ public class H5Ex_T_ObjectReference {
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = -1;
dataset_id = HDF5Constants.H5I_INVALID_HID;
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -106,7 +106,7 @@ public class H5Ex_T_ObjectReference {
HDF5Constants.H5P_DEFAULT);
if (group_id >= 0)
H5.H5Gclose(group_id);
group_id = -1;
group_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();
@@ -187,11 +187,11 @@ public class H5Ex_T_ObjectReference {
}
private static void readObjRef() {
long file_id = -1;
long dataset_id = -1;
long dataspace_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
int object_type = -1;
long object_id = -1;
long object_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data;
java/examples/datatypes/H5Ex_T_ObjectReferenceAttribute.java
+14 -14
View File
@@ -67,11 +67,11 @@ public class H5Ex_T_ObjectReferenceAttribute {
}
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long group_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][8];
@@ -92,9 +92,9 @@ public class H5Ex_T_ObjectReferenceAttribute {
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = -1;
dataset_id = HDF5Constants.H5I_INVALID_HID;
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -108,7 +108,7 @@ public class H5Ex_T_ObjectReferenceAttribute {
HDF5Constants.H5P_DEFAULT);
if (group_id >= 0)
H5.H5Gclose(group_id);
group_id = -1;
group_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();
@@ -139,7 +139,7 @@ public class H5Ex_T_ObjectReferenceAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -212,12 +212,12 @@ public class H5Ex_T_ObjectReferenceAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
int object_type = -1;
long object_id = -1;
long object_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data;
java/examples/datatypes/H5Ex_T_Opaque.java
+9 -9
View File
@@ -32,10 +32,10 @@ public class H5Ex_T_Opaque {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long datatype_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[] dset_data = new byte[DIM0 * LEN];
byte[] str_data = { 'O', 'P', 'A', 'Q', 'U', 'E' };
@@ -138,11 +138,11 @@ public class H5Ex_T_Opaque {
}
private static void ReadDataset() {
long file_id = -1;
long datatype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long type_len = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long type_len = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[] dset_data;
String tag_name = null;
java/examples/datatypes/H5Ex_T_OpaqueAttribute.java
+11 -11
View File
@@ -33,11 +33,11 @@ public class H5Ex_T_OpaqueAttribute {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long datatype_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[] dset_data = new byte[DIM0 * LEN];
byte[] str_data = { 'O', 'P', 'A', 'Q', 'U', 'E' };
@@ -65,7 +65,7 @@ public class H5Ex_T_OpaqueAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -158,11 +158,11 @@ public class H5Ex_T_OpaqueAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long datatype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long type_len = -1;
long[] dims = { DIM0 };
byte[] dset_data;
java/examples/datatypes/H5Ex_T_String.java
+10 -10
View File
@@ -32,11 +32,11 @@ public class H5Ex_T_String {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][SDIM];
StringBuffer[] str_data = { new StringBuffer("Parting"), new StringBuffer("is such"),
@@ -156,11 +156,11 @@ public class H5Ex_T_String {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long sdim = 0;
long[] dims = { DIM0 };
byte[][] dset_data;
java/examples/datatypes/H5Ex_T_StringAttribute.java
+13 -13
View File
@@ -33,12 +33,12 @@ public class H5Ex_T_StringAttribute {
private static final int RANK = 1;
private static void CreateDataset() {
long file_id = -1;
long memtype_id = -1;
long filetype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM0 };
byte[][] dset_data = new byte[DIM0][SDIM];
StringBuffer[] str_data = { new StringBuffer("Parting"), new StringBuffer("is such"),
@@ -80,7 +80,7 @@ public class H5Ex_T_StringAttribute {
dataset_id = H5.H5Dcreate(file_id, DATASETNAME, HDF5Constants.H5T_STD_I32LE, dataspace_id,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
}
catch (Exception e) {
@@ -179,12 +179,12 @@ public class H5Ex_T_StringAttribute {
}
private static void ReadDataset() {
long file_id = -1;
long filetype_id = -1;
long memtype_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long memtype_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long sdim = 0;
long[] dims = { DIM0 };
byte[][] dset_data;
java/examples/datatypes/H5Ex_T_VLString.java
+7 -7
View File
@@ -26,10 +26,10 @@ public class H5Ex_T_VLString
private static String DATASETNAME = "DS1";
private static void createDataset() {
long file_id = -1;
long type_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long type_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
int rank = 1;
String[] str_data = { "Parting", "is such", "sweet", "sorrow." };
long[] dims = { str_data.length };
@@ -93,9 +93,9 @@ public class H5Ex_T_VLString
}
private static void readDataset() {
long file_id = -1;
long type_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long type_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
String[] str_data = { "", "", "", "" };
try {
java/examples/groups/H5Ex_G_Compact.java
+3 -3
View File
@@ -60,9 +60,9 @@ public class H5Ex_G_Compact {
}
public static void CreateGroup() {
long file_id = -1;
long group_id = -1;
long fapl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
H5G_info_t ginfo;
long size;
java/examples/groups/H5Ex_G_Corder.java
+4 -4
View File
@@ -25,10 +25,10 @@ public class H5Ex_G_Corder {
private static String FILE = "H5Ex_G_Corder.h5";
private static void CreateGroup() throws Exception {
long file_id = -1;
long group_id = -1;
long subgroup_id = -1;
long gcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long subgroup_id = HDF5Constants.H5I_INVALID_HID;
long gcpl_id = HDF5Constants.H5I_INVALID_HID;
int status;
H5G_info_t ginfo;
int i;
java/examples/groups/H5Ex_G_Create.java
+2 -2
View File
@@ -25,8 +25,8 @@ public class H5Ex_G_Create {
private static String GROUPNAME = "G1";
private static void CreateGroup() {
long file_id = -1;
long group_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {
java/examples/groups/H5Ex_G_Intermediate.java
+3 -3
View File
@@ -31,9 +31,9 @@ public class H5Ex_G_Intermediate {
private void CreateGroup() throws Exception {
long file_id = -1;
long group_id = -1;
long gcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long gcpl_id = HDF5Constants.H5I_INVALID_HID;
try {
// Create a new file_id using the default properties.
java/examples/groups/H5Ex_G_Iterate.java
+1 -1
View File
@@ -58,7 +58,7 @@ public class H5Ex_G_Iterate {
}
private static void do_iterate() {
long file_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
// Open a file using default properties.
try {
java/examples/groups/H5Ex_G_Phase.java
+5 -5
View File
@@ -60,11 +60,11 @@ public class H5Ex_G_Phase {
}
private static void CreateGroup() {
long file_id = -1;
long group_id = -1;
long subgroup_id = -1;
long fapl_id = -1;
long gcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long subgroup_id = HDF5Constants.H5I_INVALID_HID;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long gcpl_id = HDF5Constants.H5I_INVALID_HID;
H5G_info_t ginfo;
String name = "G0"; // Name of subgroup_id
int i;
java/examples/groups/H5Ex_G_Traverse.java
+1 -1
View File
@@ -43,7 +43,7 @@ public class H5Ex_G_Traverse {
public static H5L_iterate_t iter_cb = new H5L_iter_callbackT();
private static void OpenGroup() {
long file_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
H5O_info_t infobuf;
opdata od = new opdata();
java/examples/groups/H5Ex_G_Visit.java
+1 -1
View File
@@ -47,7 +47,7 @@ public class H5Ex_G_Visit {
private void VisitGroup() throws Exception {
long file_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
try {
// Open file
java/examples/intro/H5_CreateAttribute.java
+4 -4
View File
@@ -28,10 +28,10 @@ public class H5_CreateAttribute {
private static String DATASETATTRIBUTE = "Units";
private static void CreateDatasetAttribute() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long attribute_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long[] dims1 = { DIM_X, DIM_Y };
long[] dims = { 2 };
int[] attr_data = { 100, 200 };
java/examples/intro/H5_CreateDataset.java
+3 -3
View File
@@ -27,9 +27,9 @@ public class H5_CreateDataset {
private static final int DIM_Y = 6;
private static void CreateDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
// Create a new file using default properties.
java/examples/intro/H5_CreateFile.java
+1 -1
View File
@@ -24,7 +24,7 @@ public class H5_CreateFile {
static final String FILENAME = "H5_CreateFile.h5";
private static void CreateFile() {
long file_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {
java/examples/intro/H5_CreateGroup.java
+2 -2
View File
@@ -25,8 +25,8 @@ public class H5_CreateGroup {
private static String GROUPNAME = "MyGroup";
private static void CreateGroup() {
long file_id = -1;
long group_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {
java/examples/intro/H5_CreateGroupAbsoluteRelative.java
+4 -4
View File
@@ -27,10 +27,10 @@ public class H5_CreateGroupAbsoluteRelative {
private static String GROUPNAME_B = "GroupB";
private static void CreateGroupAbsoluteAndRelative() {
long file_id = -1;
long group1_id = -1;
long group2_id = -1;
long group3_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long group1_id = HDF5Constants.H5I_INVALID_HID;
long group2_id = HDF5Constants.H5I_INVALID_HID;
long group3_id = HDF5Constants.H5I_INVALID_HID;
// Create a new file using default properties.
try {
java/examples/intro/H5_CreateGroupDataset.java
+8 -8
View File
@@ -32,12 +32,12 @@ public class H5_CreateGroupDataset {
private static final int DIM2_Y = 10;
private static void h5_crtgrpd() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long group_id = -1;
long group1_id = -1;
long group2_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long group_id = HDF5Constants.H5I_INVALID_HID;
long group1_id = HDF5Constants.H5I_INVALID_HID;
long group2_id = HDF5Constants.H5I_INVALID_HID;
int[][] dset1_data = new int[DIM1_X][DIM1_Y];
int[][] dset2_data = new int[DIM2_X][DIM2_Y];
long[] dims1 = { DIM1_X, DIM1_Y };
@@ -108,7 +108,7 @@ public class H5_CreateGroupDataset {
try {
if (dataspace_id >= 0)
H5.H5Sclose(dataspace_id);
dataspace_id = -1;
dataspace_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();
@@ -118,7 +118,7 @@ public class H5_CreateGroupDataset {
try {
if (dataset_id >= 0)
H5.H5Dclose(dataset_id);
dataset_id = -1;
dataset_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Exception e) {
e.printStackTrace();
java/examples/intro/H5_ReadWrite.java
+3 -3
View File
@@ -27,9 +27,9 @@ public class H5_ReadWrite {
private static final int DIM_Y = 6;
private static void ReadWriteDataset() {
long file_id = -1;
long dataspace_id = -1;
long dataset_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long[] dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
java/src/hdf/hdf5lib/HDF5Constants.java
+462
View File
@@ -47,54 +47,103 @@ public class HDF5Constants {
public static final int H5_SZIP_ALLOW_K13_OPTION_MASK = H5_SZIP_ALLOW_K13_OPTION_MASK();
/** Special parameters for szip compression */
public static final int H5_SZIP_CHIP_OPTION_MASK = H5_SZIP_CHIP_OPTION_MASK();
/** indices on links, unknown index type */
public static final int H5_INDEX_UNKNOWN = H5_INDEX_UNKNOWN();
/** indices on links, index on names */
public static final int H5_INDEX_NAME = H5_INDEX_NAME();
/** indices on links, index on creation order */
public static final int H5_INDEX_CRT_ORDER = H5_INDEX_CRT_ORDER();
/** indices on links, number of indices defined */
public static final int H5_INDEX_N = H5_INDEX_N();
/** */
public static final int H5_ITER_UNKNOWN = H5_ITER_UNKNOWN();
/** */
public static final int H5_ITER_INC = H5_ITER_INC();
/** */
public static final int H5_ITER_DEC = H5_ITER_DEC();
/** */
public static final int H5_ITER_NATIVE = H5_ITER_NATIVE();
/** */
public static final int H5_ITER_N = H5_ITER_N();
/** */
public static final int H5AC_CURR_CACHE_CONFIG_VERSION = H5AC_CURR_CACHE_CONFIG_VERSION();
/** */
public static final int H5AC_MAX_TRACE_FILE_NAME_LEN = H5AC_MAX_TRACE_FILE_NAME_LEN();
/** */
public static final int H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY = H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY();
/** */
public static final int H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED = H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED();
/** */
public static final int H5C_incr_off = H5C_incr_off();
/** */
public static final int H5C_incr_threshold = H5C_incr_threshold();
/** */
public static final int H5C_flash_incr_off = H5C_flash_incr_off();
/** */
public static final int H5C_flash_incr_add_space = H5C_flash_incr_add_space();
/** */
public static final int H5C_decr_off = H5C_decr_off();
/** */
public static final int H5C_decr_threshold = H5C_decr_threshold();
/** */
public static final int H5C_decr_age_out = H5C_decr_age_out();
/** */
public static final int H5C_decr_age_out_with_threshold = H5C_decr_age_out_with_threshold();
/** */
public static final int H5D_CHUNK_IDX_BTREE = H5D_CHUNK_IDX_BTREE();
/** */
public static final int H5D_ALLOC_TIME_DEFAULT = H5D_ALLOC_TIME_DEFAULT();
/** */
public static final int H5D_ALLOC_TIME_EARLY = H5D_ALLOC_TIME_EARLY();
/** */
public static final int H5D_ALLOC_TIME_ERROR = H5D_ALLOC_TIME_ERROR();
/** */
public static final int H5D_ALLOC_TIME_INCR = H5D_ALLOC_TIME_INCR();
/** */
public static final int H5D_ALLOC_TIME_LATE = H5D_ALLOC_TIME_LATE();
/** */
public static final int H5D_FILL_TIME_ERROR = H5D_FILL_TIME_ERROR();
/** */
public static final int H5D_FILL_TIME_ALLOC = H5D_FILL_TIME_ALLOC();
/** */
public static final int H5D_FILL_TIME_NEVER = H5D_FILL_TIME_NEVER();
/** */
public static final int H5D_FILL_TIME_IFSET = H5D_FILL_TIME_IFSET();
/** */
public static final int H5D_FILL_VALUE_DEFAULT = H5D_FILL_VALUE_DEFAULT();
/** */
public static final int H5D_FILL_VALUE_ERROR = H5D_FILL_VALUE_ERROR();
/** */
public static final int H5D_FILL_VALUE_UNDEFINED = H5D_FILL_VALUE_UNDEFINED();
/** */
public static final int H5D_FILL_VALUE_USER_DEFINED = H5D_FILL_VALUE_USER_DEFINED();
/** */
public static final int H5D_LAYOUT_ERROR = H5D_LAYOUT_ERROR();
/** */
public static final int H5D_CHUNKED = H5D_CHUNKED();
/** */
public static final int H5D_COMPACT = H5D_COMPACT();
/** */
public static final int H5D_CONTIGUOUS = H5D_CONTIGUOUS();
/** */
public static final int H5D_VIRTUAL = H5D_VIRTUAL();
/** */
public static final int H5D_NLAYOUTS = H5D_NLAYOUTS();
/** */
public static final int H5D_SPACE_STATUS_ALLOCATED = H5D_SPACE_STATUS_ALLOCATED();
/** */
public static final int H5D_SPACE_STATUS_ERROR = H5D_SPACE_STATUS_ERROR();
/** */
public static final int H5D_SPACE_STATUS_NOT_ALLOCATED = H5D_SPACE_STATUS_NOT_ALLOCATED();
/** */
public static final int H5D_SPACE_STATUS_PART_ALLOCATED = H5D_SPACE_STATUS_PART_ALLOCATED();
/** */
public static final int H5D_VDS_ERROR = H5D_VDS_ERROR();
/** */
public static final int H5D_VDS_FIRST_MISSING = H5D_VDS_FIRST_MISSING();
/** */
public static final int H5D_VDS_LAST_AVAILABLE = H5D_VDS_LAST_AVAILABLE();
/** */
public static final int H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS = H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS();
/** Different kinds of error information - H5E_type_t */
@@ -452,96 +501,184 @@ public class HDF5Constants {
/** Generic low-level file I/O errors - Write failed */
public static final long H5E_WRITEERROR = H5E_WRITEERROR();
/** */
private static final int H5ES_STATUS_IN_PROGRESS = H5ES_STATUS_IN_PROGRESS();
/** */
private static final int H5ES_STATUS_SUCCEED = H5ES_STATUS_SUCCEED();
/** */
private static final int H5ES_STATUS_FAIL = H5ES_STATUS_FAIL();
/** */
public static final int H5F_ACC_CREAT = H5F_ACC_CREAT();
/** */
public static final int H5F_ACC_EXCL = H5F_ACC_EXCL();
/** */
public static final int H5F_ACC_RDONLY = H5F_ACC_RDONLY();
/** */
public static final int H5F_ACC_RDWR = H5F_ACC_RDWR();
/** */
public static final int H5F_ACC_TRUNC = H5F_ACC_TRUNC();
/** */
public static final int H5F_ACC_DEFAULT = H5F_ACC_DEFAULT();
/** */
public static final int H5F_ACC_SWMR_READ = H5F_ACC_SWMR_READ();
/** */
public static final int H5F_ACC_SWMR_WRITE = H5F_ACC_SWMR_WRITE();
/** */
public static final int H5F_CLOSE_DEFAULT = H5F_CLOSE_DEFAULT();
/** */
public static final int H5F_CLOSE_SEMI = H5F_CLOSE_SEMI();
/** */
public static final int H5F_CLOSE_STRONG = H5F_CLOSE_STRONG();
/** */
public static final int H5F_CLOSE_WEAK = H5F_CLOSE_WEAK();
/** */
public static final int H5F_LIBVER_ERROR = H5F_LIBVER_ERROR();
/** */
public static final int H5F_LIBVER_EARLIEST = H5F_LIBVER_EARLIEST();
/** */
public static final int H5F_LIBVER_V18 = H5F_LIBVER_V18();
/** */
public static final int H5F_LIBVER_V110 = H5F_LIBVER_V110();
/** */
public static final int H5F_LIBVER_V112 = H5F_LIBVER_V112();
/** */
public static final int H5F_LIBVER_V114 = H5F_LIBVER_V114();
/** */
public static final int H5F_LIBVER_NBOUNDS = H5F_LIBVER_NBOUNDS();
/** */
public static final int H5F_LIBVER_LATEST = H5F_LIBVER_LATEST();
/** */
public static final int H5F_OBJ_ALL = H5F_OBJ_ALL();
/** */
public static final int H5F_OBJ_ATTR = H5F_OBJ_ATTR();
/** */
public static final int H5F_OBJ_DATASET = H5F_OBJ_DATASET();
/** */
public static final int H5F_OBJ_DATATYPE = H5F_OBJ_DATATYPE();
/** */
public static final int H5F_OBJ_FILE = H5F_OBJ_FILE();
/** */
public static final int H5F_OBJ_GROUP = H5F_OBJ_GROUP();
/** */
public static final int H5F_OBJ_LOCAL = H5F_OBJ_LOCAL();
/** */
public static final int H5F_SCOPE_GLOBAL = H5F_SCOPE_GLOBAL();
/** */
public static final int H5F_SCOPE_LOCAL = H5F_SCOPE_LOCAL();
/** */
public static final int H5F_UNLIMITED = H5F_UNLIMITED();
/** */
public static final int H5F_FSPACE_STRATEGY_FSM_AGGR = H5F_FSPACE_STRATEGY_FSM_AGGR();
/** */
public static final int H5F_FSPACE_STRATEGY_AGGR = H5F_FSPACE_STRATEGY_AGGR();
/** */
public static final int H5F_FSPACE_STRATEGY_PAGE = H5F_FSPACE_STRATEGY_PAGE();
/** */
public static final int H5F_FSPACE_STRATEGY_NONE = H5F_FSPACE_STRATEGY_NONE();
/** */
public static final int H5F_FSPACE_STRATEGY_NTYPES = H5F_FSPACE_STRATEGY_NTYPES();
/** */
public static final long H5FD_CORE = H5FD_CORE();
/** */
public static final long H5FD_DIRECT = H5FD_DIRECT();
/** */
public static final long H5FD_FAMILY = H5FD_FAMILY();
/** */
public static final long H5FD_LOG = H5FD_LOG();
/** */
public static final long H5FD_MPIO = H5FD_MPIO();
/** */
public static final long H5FD_MULTI = H5FD_MULTI();
/** */
public static final long H5FD_SEC2 = H5FD_SEC2();
/** */
public static final long H5FD_STDIO = H5FD_STDIO();
/** */
public static final long H5FD_WINDOWS = H5FD_WINDOWS();
/** */
public static final long H5FD_ROS3 = H5FD_ROS3();
/** */
public static final long H5FD_HDFS = H5FD_HDFS();
/** */
public static final int H5FD_LOG_LOC_READ = H5FD_LOG_LOC_READ();
/** */
public static final int H5FD_LOG_LOC_WRITE = H5FD_LOG_LOC_WRITE();
/** */
public static final int H5FD_LOG_LOC_SEEK = H5FD_LOG_LOC_SEEK();
/** */
public static final int H5FD_LOG_LOC_IO = H5FD_LOG_LOC_IO();
/** */
public static final int H5FD_LOG_FILE_READ = H5FD_LOG_FILE_READ();
/** */
public static final int H5FD_LOG_FILE_WRITE = H5FD_LOG_FILE_WRITE();
/** */
public static final int H5FD_LOG_FILE_IO = H5FD_LOG_FILE_IO();
/** */
public static final int H5FD_LOG_FLAVOR = H5FD_LOG_FLAVOR();
/** */
public static final int H5FD_LOG_NUM_READ = H5FD_LOG_NUM_READ();
/** */
public static final int H5FD_LOG_NUM_WRITE = H5FD_LOG_NUM_WRITE();
/** */
public static final int H5FD_LOG_NUM_SEEK = H5FD_LOG_NUM_SEEK();
/** */
public static final int H5FD_LOG_NUM_TRUNCATE = H5FD_LOG_NUM_TRUNCATE();
/** */
public static final int H5FD_LOG_NUM_IO = H5FD_LOG_NUM_IO();
/** */
public static final int H5FD_LOG_TIME_OPEN = H5FD_LOG_TIME_OPEN();
/** */
public static final int H5FD_LOG_TIME_STAT = H5FD_LOG_TIME_STAT();
/** */
public static final int H5FD_LOG_TIME_READ = H5FD_LOG_TIME_READ();
/** */
public static final int H5FD_LOG_TIME_WRITE = H5FD_LOG_TIME_WRITE();
/** */
public static final int H5FD_LOG_TIME_SEEK = H5FD_LOG_TIME_SEEK();
/** */
public static final int H5FD_LOG_TIME_CLOSE = H5FD_LOG_TIME_CLOSE();
/** */
public static final int H5FD_LOG_TIME_IO = H5FD_LOG_TIME_IO();
/** */
public static final int H5FD_LOG_ALLOC = H5FD_LOG_ALLOC();
/** */
public static final int H5FD_LOG_ALL = H5FD_LOG_ALL();
/** */
public static final int H5FD_MEM_NOLIST = H5FD_MEM_NOLIST();
/** */
public static final int H5FD_MEM_DEFAULT = H5FD_MEM_DEFAULT();
/** */
public static final int H5FD_MEM_SUPER = H5FD_MEM_SUPER();
/** */
public static final int H5FD_MEM_BTREE = H5FD_MEM_BTREE();
/** */
public static final int H5FD_MEM_DRAW = H5FD_MEM_DRAW();
/** */
public static final int H5FD_MEM_GHEAP = H5FD_MEM_GHEAP();
/** */
public static final int H5FD_MEM_LHEAP = H5FD_MEM_LHEAP();
/** */
public static final int H5FD_MEM_OHDR = H5FD_MEM_OHDR();
/** */
public static final int H5FD_MEM_NTYPES = H5FD_MEM_NTYPES();
/** */
public static final long H5FD_DEFAULT_HADDR_SIZE = H5FD_DEFAULT_HADDR_SIZE();
/** */
public static final long H5FD_MEM_DEFAULT_SIZE = H5FD_MEM_DEFAULT_SIZE();
/** */
public static final long H5FD_MEM_DEFAULT_SUPER_SIZE = H5FD_MEM_DEFAULT_SUPER_SIZE();
/** */
public static final long H5FD_MEM_DEFAULT_BTREE_SIZE = H5FD_MEM_DEFAULT_BTREE_SIZE();
/** */
public static final long H5FD_MEM_DEFAULT_DRAW_SIZE = H5FD_MEM_DEFAULT_DRAW_SIZE();
/** */
public static final long H5FD_MEM_DEFAULT_GHEAP_SIZE = H5FD_MEM_DEFAULT_GHEAP_SIZE();
/** */
public static final long H5FD_MEM_DEFAULT_LHEAP_SIZE = H5FD_MEM_DEFAULT_LHEAP_SIZE();
/** */
public static final long H5FD_MEM_DEFAULT_OHDR_SIZE = H5FD_MEM_DEFAULT_OHDR_SIZE();
// public static final int H5G_DATASET = H5G_DATASET();
@@ -561,120 +698,229 @@ public class HDF5Constants {
// public static final int H5G_TYPE = H5G_TYPE();
// public static final int H5G_UNKNOWN = H5G_UNKNOWN();
/** */
public static final int H5G_STORAGE_TYPE_UNKNOWN = H5G_STORAGE_TYPE_UNKNOWN();
/** */
public static final int H5G_STORAGE_TYPE_SYMBOL_TABLE = H5G_STORAGE_TYPE_SYMBOL_TABLE();
/** */
public static final int H5G_STORAGE_TYPE_COMPACT = H5G_STORAGE_TYPE_COMPACT();
/** */
public static final int H5G_STORAGE_TYPE_DENSE = H5G_STORAGE_TYPE_DENSE();
/** */
public static final int H5I_ATTR = H5I_ATTR();
/** */
public static final int H5I_BADID = H5I_BADID();
/** */
public static final int H5I_DATASET = H5I_DATASET();
/** */
public static final int H5I_DATASPACE = H5I_DATASPACE();
/** */
public static final int H5I_DATATYPE = H5I_DATATYPE();
/** */
public static final int H5I_ERROR_CLASS = H5I_ERROR_CLASS();
/** */
public static final int H5I_ERROR_MSG = H5I_ERROR_MSG();
/** */
public static final int H5I_ERROR_STACK = H5I_ERROR_STACK();
/** */
public static final int H5I_FILE = H5I_FILE();
/** */
public static final int H5I_GENPROP_CLS = H5I_GENPROP_CLS();
/** */
public static final int H5I_GENPROP_LST = H5I_GENPROP_LST();
/** */
public static final int H5I_GROUP = H5I_GROUP();
/** */
public static final int H5I_INVALID_HID = H5I_INVALID_HID();
/** */
public static final int H5I_NTYPES = H5I_NTYPES();
/** */
public static final int H5I_UNINIT = H5I_UNINIT();
/** */
public static final int H5I_VFL = H5I_VFL();
/** */
public static final int H5I_VOL = H5I_VOL();
/** */
public static final int H5L_TYPE_ERROR = H5L_TYPE_ERROR();
/** */
public static final int H5L_TYPE_HARD = H5L_TYPE_HARD();
/** */
public static final int H5L_TYPE_SOFT = H5L_TYPE_SOFT();
/** */
public static final int H5L_TYPE_EXTERNAL = H5L_TYPE_EXTERNAL();
/** */
public static final int H5L_TYPE_MAX = H5L_TYPE_MAX();
/** */
public static final int H5O_COPY_SHALLOW_HIERARCHY_FLAG = H5O_COPY_SHALLOW_HIERARCHY_FLAG();
/** */
public static final int H5O_COPY_EXPAND_SOFT_LINK_FLAG = H5O_COPY_EXPAND_SOFT_LINK_FLAG();
/** */
public static final int H5O_COPY_EXPAND_EXT_LINK_FLAG = H5O_COPY_EXPAND_EXT_LINK_FLAG();
/** */
public static final int H5O_COPY_EXPAND_REFERENCE_FLAG = H5O_COPY_EXPAND_REFERENCE_FLAG();
/** */
public static final int H5O_COPY_WITHOUT_ATTR_FLAG = H5O_COPY_WITHOUT_ATTR_FLAG();
/** */
public static final int H5O_COPY_PRESERVE_NULL_FLAG = H5O_COPY_PRESERVE_NULL_FLAG();
/** */
public static final int H5O_INFO_BASIC = H5O_INFO_BASIC();
/** */
public static final int H5O_INFO_TIME = H5O_INFO_TIME();
/** */
public static final int H5O_INFO_NUM_ATTRS = H5O_INFO_NUM_ATTRS();
/** */
public static final int H5O_INFO_ALL = H5O_INFO_ALL();
/** */
public static final int H5O_NATIVE_INFO_HDR = H5O_NATIVE_INFO_HDR();
/** */
public static final int H5O_NATIVE_INFO_META_SIZE = H5O_NATIVE_INFO_META_SIZE();
/** */
public static final int H5O_NATIVE_INFO_ALL = H5O_NATIVE_INFO_ALL();
/** */
public static final int H5O_SHMESG_NONE_FLAG = H5O_SHMESG_NONE_FLAG();
/** */
public static final int H5O_SHMESG_SDSPACE_FLAG = H5O_SHMESG_SDSPACE_FLAG();
/** */
public static final int H5O_SHMESG_DTYPE_FLAG = H5O_SHMESG_DTYPE_FLAG();
/** */
public static final int H5O_SHMESG_FILL_FLAG = H5O_SHMESG_FILL_FLAG();
/** */
public static final int H5O_SHMESG_PLINE_FLAG = H5O_SHMESG_PLINE_FLAG();
/** */
public static final int H5O_SHMESG_ATTR_FLAG = H5O_SHMESG_ATTR_FLAG();
/** */
public static final int H5O_SHMESG_ALL_FLAG = H5O_SHMESG_ALL_FLAG();
/** */
public static final int H5O_TYPE_UNKNOWN = H5O_TYPE_UNKNOWN();
/** */
public static final int H5O_TYPE_GROUP = H5O_TYPE_GROUP();
/** */
public static final int H5O_TYPE_DATASET = H5O_TYPE_DATASET();
/** */
public static final int H5O_TYPE_NAMED_DATATYPE = H5O_TYPE_NAMED_DATATYPE();
/** */
public static final int H5O_TYPE_NTYPES = H5O_TYPE_NTYPES();
/** */
public static final int H5O_MAX_TOKEN_SIZE = H5O_MAX_TOKEN_SIZE();
/** */
public static final H5O_token_t H5O_TOKEN_UNDEF = H5O_TOKEN_UNDEF();
/** */
public static final long H5P_ROOT = H5P_ROOT();
/** */
public static final long H5P_OBJECT_CREATE = H5P_OBJECT_CREATE();
/** */
public static final long H5P_FILE_CREATE = H5P_FILE_CREATE();
/** */
public static final long H5P_FILE_ACCESS = H5P_FILE_ACCESS();
/** */
public static final long H5P_DATASET_CREATE = H5P_DATASET_CREATE();
/** */
public static final long H5P_DATASET_ACCESS = H5P_DATASET_ACCESS();
/** */
public static final long H5P_DATASET_XFER = H5P_DATASET_XFER();
/** */
public static final long H5P_FILE_MOUNT = H5P_FILE_MOUNT();
/** */
public static final long H5P_GROUP_CREATE = H5P_GROUP_CREATE();
/** */
public static final long H5P_GROUP_ACCESS = H5P_GROUP_ACCESS();
/** */
public static final long H5P_DATATYPE_CREATE = H5P_DATATYPE_CREATE();
/** */
public static final long H5P_DATATYPE_ACCESS = H5P_DATATYPE_ACCESS();
/** */
public static final long H5P_STRING_CREATE = H5P_STRING_CREATE();
/** */
public static final long H5P_ATTRIBUTE_CREATE = H5P_ATTRIBUTE_CREATE();
/** */
public static final long H5P_ATTRIBUTE_ACCESS = H5P_ATTRIBUTE_ACCESS();
/** */
public static final long H5P_OBJECT_COPY = H5P_OBJECT_COPY();
/** */
public static final long H5P_LINK_CREATE = H5P_LINK_CREATE();
/** */
public static final long H5P_LINK_ACCESS = H5P_LINK_ACCESS();
/** */
public static final long H5P_VOL_INITIALIZE = H5P_VOL_INITIALIZE();
/** */
public static final long H5P_FILE_CREATE_DEFAULT = H5P_FILE_CREATE_DEFAULT();
/** */
public static final long H5P_FILE_ACCESS_DEFAULT = H5P_FILE_ACCESS_DEFAULT();
/** */
public static final long H5P_DATASET_CREATE_DEFAULT = H5P_DATASET_CREATE_DEFAULT();
/** */
public static final long H5P_DATASET_ACCESS_DEFAULT = H5P_DATASET_ACCESS_DEFAULT();
/** */
public static final long H5P_DATASET_XFER_DEFAULT = H5P_DATASET_XFER_DEFAULT();
/** */
public static final long H5P_FILE_MOUNT_DEFAULT = H5P_FILE_MOUNT_DEFAULT();
/** */
public static final long H5P_GROUP_CREATE_DEFAULT = H5P_GROUP_CREATE_DEFAULT();
/** */
public static final long H5P_GROUP_ACCESS_DEFAULT = H5P_GROUP_ACCESS_DEFAULT();
/** */
public static final long H5P_DATATYPE_CREATE_DEFAULT = H5P_DATATYPE_CREATE_DEFAULT();
/** */
public static final long H5P_DATATYPE_ACCESS_DEFAULT = H5P_DATATYPE_ACCESS_DEFAULT();
/** */
public static final long H5P_ATTRIBUTE_CREATE_DEFAULT = H5P_ATTRIBUTE_CREATE_DEFAULT();
/** */
public static final long H5P_ATTRIBUTE_ACCESS_DEFAULT = H5P_ATTRIBUTE_ACCESS_DEFAULT();
/** */
public static final long H5P_OBJECT_COPY_DEFAULT = H5P_OBJECT_COPY_DEFAULT();
/** */
public static final long H5P_LINK_CREATE_DEFAULT = H5P_LINK_CREATE_DEFAULT();
/** */
public static final long H5P_LINK_ACCESS_DEFAULT = H5P_LINK_ACCESS_DEFAULT();
/** */
public static final long H5P_VOL_INITIALIZE_DEFAULT = H5P_VOL_INITIALIZE_DEFAULT();
/** */
public static final int H5P_CRT_ORDER_TRACKED = H5P_CRT_ORDER_TRACKED();
/** */
public static final int H5P_CRT_ORDER_INDEXED = H5P_CRT_ORDER_INDEXED();
/** */
public static final long H5P_DEFAULT = H5P_DEFAULT();
/** */
public static final int H5PL_TYPE_ERROR = H5PL_TYPE_ERROR();
/** */
public static final int H5PL_TYPE_FILTER = H5PL_TYPE_FILTER();
/** */
public static final int H5PL_TYPE_VOL = H5PL_TYPE_VOL();
/** */
public static final int H5PL_TYPE_NONE = H5PL_TYPE_NONE();
/** */
public static final int H5PL_FILTER_PLUGIN = H5PL_FILTER_PLUGIN();
/** */
public static final int H5PL_VOL_PLUGIN = H5PL_VOL_PLUGIN();
/** */
public static final int H5PL_ALL_PLUGIN = H5PL_ALL_PLUGIN();
/** */
public static final int H5R_ATTR = H5R_ATTR();
/** */
public static final int H5R_BADTYPE = H5R_BADTYPE();
/** */
public static final int H5R_DATASET_REGION = H5R_DATASET_REGION();
/** */
public static final int H5R_DATASET_REGION1 = H5R_DATASET_REGION1();
/** */
public static final int H5R_DATASET_REGION2 = H5R_DATASET_REGION2();
/** */
public static final int H5R_MAXTYPE = H5R_MAXTYPE();
/** */
public static final int H5R_REF_BUF_SIZE = H5R_REF_BUF_SIZE();
/** */
public static final int H5R_OBJ_REF_BUF_SIZE = H5R_OBJ_REF_BUF_SIZE();
/** */
public static final int H5R_OBJECT = H5R_OBJECT();
/** */
public static final int H5R_OBJECT1 = H5R_OBJECT1();
/** */
public static final int H5R_OBJECT2 = H5R_OBJECT2();
/** Define atomic datatypes */
@@ -724,222 +970,438 @@ public class HDF5Constants {
/** Define atomic datatypes */
public static final int H5S_UNLIMITED = H5S_UNLIMITED();
/** */
public static final long H5T_ALPHA_B16 = H5T_ALPHA_B16();
/** */
public static final long H5T_ALPHA_B32 = H5T_ALPHA_B32();
/** */
public static final long H5T_ALPHA_B64 = H5T_ALPHA_B64();
/** */
public static final long H5T_ALPHA_B8 = H5T_ALPHA_B8();
/** */
public static final long H5T_ALPHA_F32 = H5T_ALPHA_F32();
/** */
public static final long H5T_ALPHA_F64 = H5T_ALPHA_F64();
/** */
public static final long H5T_ALPHA_I16 = H5T_ALPHA_I16();
/** */
public static final long H5T_ALPHA_I32 = H5T_ALPHA_I32();
/** */
public static final long H5T_ALPHA_I64 = H5T_ALPHA_I64();
/** */
public static final long H5T_ALPHA_I8 = H5T_ALPHA_I8();
/** */
public static final long H5T_ALPHA_U16 = H5T_ALPHA_U16();
/** */
public static final long H5T_ALPHA_U32 = H5T_ALPHA_U32();
/** */
public static final long H5T_ALPHA_U64 = H5T_ALPHA_U64();
/** */
public static final long H5T_ALPHA_U8 = H5T_ALPHA_U8();
/** */
public static final int H5T_ARRAY = H5T_ARRAY();
/** */
public static final int H5T_BITFIELD = H5T_BITFIELD();
/** */
public static final int H5T_BKG_NO = H5T_BKG_NO();
/** */
public static final int H5T_BKG_YES = H5T_BKG_YES();
/** */
public static final long H5T_C_S1 = H5T_C_S1();
/** */
public static final int H5T_COMPOUND = H5T_COMPOUND();
/** */
public static final int H5T_CONV_CONV = H5T_CONV_CONV();
/** */
public static final int H5T_CONV_FREE = H5T_CONV_FREE();
/** */
public static final int H5T_CONV_INIT = H5T_CONV_INIT();
/** */
public static final int H5T_CSET_ERROR = H5T_CSET_ERROR();
/** */
public static final int H5T_CSET_ASCII = H5T_CSET_ASCII();
/** */
public static final int H5T_CSET_UTF8 = H5T_CSET_UTF8();
/** */
public static final int H5T_CSET_RESERVED_10 = H5T_CSET_RESERVED_10();
/** */
public static final int H5T_CSET_RESERVED_11 = H5T_CSET_RESERVED_11();
/** */
public static final int H5T_CSET_RESERVED_12 = H5T_CSET_RESERVED_12();
/** */
public static final int H5T_CSET_RESERVED_13 = H5T_CSET_RESERVED_13();
/** */
public static final int H5T_CSET_RESERVED_14 = H5T_CSET_RESERVED_14();
/** */
public static final int H5T_CSET_RESERVED_15 = H5T_CSET_RESERVED_15();
/** */
public static final int H5T_CSET_RESERVED_2 = H5T_CSET_RESERVED_2();
/** */
public static final int H5T_CSET_RESERVED_3 = H5T_CSET_RESERVED_3();
/** */
public static final int H5T_CSET_RESERVED_4 = H5T_CSET_RESERVED_4();
/** */
public static final int H5T_CSET_RESERVED_5 = H5T_CSET_RESERVED_5();
/** */
public static final int H5T_CSET_RESERVED_6 = H5T_CSET_RESERVED_6();
/** */
public static final int H5T_CSET_RESERVED_7 = H5T_CSET_RESERVED_7();
/** */
public static final int H5T_CSET_RESERVED_8 = H5T_CSET_RESERVED_8();
/** */
public static final int H5T_CSET_RESERVED_9 = H5T_CSET_RESERVED_9();
/** */
public static final int H5T_DIR_ASCEND = H5T_DIR_ASCEND();
/** */
public static final int H5T_DIR_DEFAULT = H5T_DIR_DEFAULT();
/** */
public static final int H5T_DIR_DESCEND = H5T_DIR_DESCEND();
/** */
public static final int H5T_ENUM = H5T_ENUM();
/** */
public static final int H5T_FLOAT = H5T_FLOAT();
/** */
public static final long H5T_FORTRAN_S1 = H5T_FORTRAN_S1();
/** */
public static final long H5T_IEEE_F32BE = H5T_IEEE_F32BE();
/** */
public static final long H5T_IEEE_F32LE = H5T_IEEE_F32LE();
/** */
public static final long H5T_IEEE_F64BE = H5T_IEEE_F64BE();
/** */
public static final long H5T_IEEE_F64LE = H5T_IEEE_F64LE();
/** */
public static final int H5T_INTEGER = H5T_INTEGER();
/** */
public static final long H5T_INTEL_B16 = H5T_INTEL_B16();
/** */
public static final long H5T_INTEL_B32 = H5T_INTEL_B32();
/** */
public static final long H5T_INTEL_B64 = H5T_INTEL_B64();
/** */
public static final long H5T_INTEL_B8 = H5T_INTEL_B8();
/** */
public static final long H5T_INTEL_F32 = H5T_INTEL_F32();
/** */
public static final long H5T_INTEL_F64 = H5T_INTEL_F64();
/** */
public static final long H5T_INTEL_I16 = H5T_INTEL_I16();
/** */
public static final long H5T_INTEL_I32 = H5T_INTEL_I32();
/** */
public static final long H5T_INTEL_I64 = H5T_INTEL_I64();
/** */
public static final long H5T_INTEL_I8 = H5T_INTEL_I8();
/** */
public static final long H5T_INTEL_U16 = H5T_INTEL_U16();
/** */
public static final long H5T_INTEL_U32 = H5T_INTEL_U32();
/** */
public static final long H5T_INTEL_U64 = H5T_INTEL_U64();
/** */
public static final long H5T_INTEL_U8 = H5T_INTEL_U8();
/** */
public static final long H5T_MIPS_B16 = H5T_MIPS_B16();
/** */
public static final long H5T_MIPS_B32 = H5T_MIPS_B32();
/** */
public static final long H5T_MIPS_B64 = H5T_MIPS_B64();
/** */
public static final long H5T_MIPS_B8 = H5T_MIPS_B8();
/** */
public static final long H5T_MIPS_F32 = H5T_MIPS_F32();
/** */
public static final long H5T_MIPS_F64 = H5T_MIPS_F64();
/** */
public static final long H5T_MIPS_I16 = H5T_MIPS_I16();
/** */
public static final long H5T_MIPS_I32 = H5T_MIPS_I32();
/** */
public static final long H5T_MIPS_I64 = H5T_MIPS_I64();
/** */
public static final long H5T_MIPS_I8 = H5T_MIPS_I8();
/** */
public static final long H5T_MIPS_U16 = H5T_MIPS_U16();
/** */
public static final long H5T_MIPS_U32 = H5T_MIPS_U32();
/** */
public static final long H5T_MIPS_U64 = H5T_MIPS_U64();
/** */
public static final long H5T_MIPS_U8 = H5T_MIPS_U8();
/** */
public static final long H5T_NATIVE_B16 = H5T_NATIVE_B16();
/** */
public static final long H5T_NATIVE_B32 = H5T_NATIVE_B32();
/** */
public static final long H5T_NATIVE_B64 = H5T_NATIVE_B64();
/** */
public static final long H5T_NATIVE_B8 = H5T_NATIVE_B8();
/** */
public static final long H5T_NATIVE_CHAR = H5T_NATIVE_CHAR();
/** */
public static final long H5T_NATIVE_DOUBLE = H5T_NATIVE_DOUBLE();
/** */
public static final long H5T_NATIVE_FLOAT = H5T_NATIVE_FLOAT();
/** */
public static final long H5T_NATIVE_HADDR = H5T_NATIVE_HADDR();
/** */
public static final long H5T_NATIVE_HBOOL = H5T_NATIVE_HBOOL();
/** */
public static final long H5T_NATIVE_HERR = H5T_NATIVE_HERR();
/** */
public static final long H5T_NATIVE_HSIZE = H5T_NATIVE_HSIZE();
/** */
public static final long H5T_NATIVE_HSSIZE = H5T_NATIVE_HSSIZE();
/** */
public static final long H5T_NATIVE_INT = H5T_NATIVE_INT();
/** */
public static final long H5T_NATIVE_INT_FAST16 = H5T_NATIVE_INT_FAST16();
/** */
public static final long H5T_NATIVE_INT_FAST32 = H5T_NATIVE_INT_FAST32();
/** */
public static final long H5T_NATIVE_INT_FAST64 = H5T_NATIVE_INT_FAST64();
/** */
public static final long H5T_NATIVE_INT_FAST8 = H5T_NATIVE_INT_FAST8();
/** */
public static final long H5T_NATIVE_INT_LEAST16 = H5T_NATIVE_INT_LEAST16();
/** */
public static final long H5T_NATIVE_INT_LEAST32 = H5T_NATIVE_INT_LEAST32();
/** */
public static final long H5T_NATIVE_INT_LEAST64 = H5T_NATIVE_INT_LEAST64();
/** */
public static final long H5T_NATIVE_INT_LEAST8 = H5T_NATIVE_INT_LEAST8();
/** */
public static final long H5T_NATIVE_INT16 = H5T_NATIVE_INT16();
/** */
public static final long H5T_NATIVE_INT32 = H5T_NATIVE_INT32();
/** */
public static final long H5T_NATIVE_INT64 = H5T_NATIVE_INT64();
/** */
public static final long H5T_NATIVE_INT8 = H5T_NATIVE_INT8();
/** */
public static final long H5T_NATIVE_LDOUBLE = H5T_NATIVE_LDOUBLE();
/** */
public static final long H5T_NATIVE_LLONG = H5T_NATIVE_LLONG();
/** */
public static final long H5T_NATIVE_LONG = H5T_NATIVE_LONG();
/** */
public static final long H5T_NATIVE_OPAQUE = H5T_NATIVE_OPAQUE();
/** */
public static final long H5T_NATIVE_SCHAR = H5T_NATIVE_SCHAR();
/** */
public static final long H5T_NATIVE_SHORT = H5T_NATIVE_SHORT();
/** */
public static final long H5T_NATIVE_UCHAR = H5T_NATIVE_UCHAR();
/** */
public static final long H5T_NATIVE_UINT = H5T_NATIVE_UINT();
/** */
public static final long H5T_NATIVE_UINT_FAST16 = H5T_NATIVE_UINT_FAST16();
/** */
public static final long H5T_NATIVE_UINT_FAST32 = H5T_NATIVE_UINT_FAST32();
/** */
public static final long H5T_NATIVE_UINT_FAST64 = H5T_NATIVE_UINT_FAST64();
/** */
public static final long H5T_NATIVE_UINT_FAST8 = H5T_NATIVE_UINT_FAST8();
/** */
public static final long H5T_NATIVE_UINT_LEAST16 = H5T_NATIVE_UINT_LEAST16();
/** */
public static final long H5T_NATIVE_UINT_LEAST32 = H5T_NATIVE_UINT_LEAST32();
/** */
public static final long H5T_NATIVE_UINT_LEAST64 = H5T_NATIVE_UINT_LEAST64();
/** */
public static final long H5T_NATIVE_UINT_LEAST8 = H5T_NATIVE_UINT_LEAST8();
/** */
public static final long H5T_NATIVE_UINT16 = H5T_NATIVE_UINT16();
/** */
public static final long H5T_NATIVE_UINT32 = H5T_NATIVE_UINT32();
/** */
public static final long H5T_NATIVE_UINT64 = H5T_NATIVE_UINT64();
/** */
public static final long H5T_NATIVE_UINT8 = H5T_NATIVE_UINT8();
/** */
public static final long H5T_NATIVE_ULLONG = H5T_NATIVE_ULLONG();
/** */
public static final long H5T_NATIVE_ULONG = H5T_NATIVE_ULONG();
/** */
public static final long H5T_NATIVE_USHORT = H5T_NATIVE_USHORT();
/** */
public static final int H5T_NCLASSES = H5T_NCLASSES();
/** */
public static final int H5T_NO_CLASS = H5T_NO_CLASS();
/** */
public static final int H5T_NORM_ERROR = H5T_NORM_ERROR();
/** */
public static final int H5T_NORM_IMPLIED = H5T_NORM_IMPLIED();
/** */
public static final int H5T_NORM_MSBSET = H5T_NORM_MSBSET();
/** */
public static final int H5T_NORM_NONE = H5T_NORM_NONE();
/** */
public static final int H5T_NPAD = H5T_NPAD();
/** */
public static final int H5T_NSGN = H5T_NSGN();
/** */
public static final int H5T_OPAQUE = H5T_OPAQUE();
/** */
public static final int H5T_OPAQUE_TAG_MAX = H5T_OPAQUE_TAG_MAX(); /* 1.6.5 */
/** */
public static final int H5T_ORDER_BE = H5T_ORDER_BE();
/** */
public static final int H5T_ORDER_ERROR = H5T_ORDER_ERROR();
/** */
public static final int H5T_ORDER_LE = H5T_ORDER_LE();
/** */
public static final int H5T_ORDER_NONE = H5T_ORDER_NONE();
/** */
public static final int H5T_ORDER_VAX = H5T_ORDER_VAX();
/** */
public static final int H5T_PAD_BACKGROUND = H5T_PAD_BACKGROUND();
/** */
public static final int H5T_PAD_ERROR = H5T_PAD_ERROR();
/** */
public static final int H5T_PAD_ONE = H5T_PAD_ONE();
/** */
public static final int H5T_PAD_ZERO = H5T_PAD_ZERO();
/** */
public static final int H5T_PERS_DONTCARE = H5T_PERS_DONTCARE();
/** */
public static final int H5T_PERS_HARD = H5T_PERS_HARD();
/** */
public static final int H5T_PERS_SOFT = H5T_PERS_SOFT();
/** */
public static final int H5T_REFERENCE = H5T_REFERENCE();
/** */
public static final int H5T_SGN_2 = H5T_SGN_2();
/** */
public static final int H5T_SGN_ERROR = H5T_SGN_ERROR();
/** */
public static final int H5T_SGN_NONE = H5T_SGN_NONE();
/** */
public static final long H5T_STD_B16BE = H5T_STD_B16BE();
/** */
public static final long H5T_STD_B16LE = H5T_STD_B16LE();
/** */
public static final long H5T_STD_B32BE = H5T_STD_B32BE();
/** */
public static final long H5T_STD_B32LE = H5T_STD_B32LE();
/** */
public static final long H5T_STD_B64BE = H5T_STD_B64BE();
/** */
public static final long H5T_STD_B64LE = H5T_STD_B64LE();
/** */
public static final long H5T_STD_B8BE = H5T_STD_B8BE();
/** */
public static final long H5T_STD_B8LE = H5T_STD_B8LE();
/** */
public static final long H5T_STD_I16BE = H5T_STD_I16BE();
/** */
public static final long H5T_STD_I16LE = H5T_STD_I16LE();
/** */
public static final long H5T_STD_I32BE = H5T_STD_I32BE();
/** */
public static final long H5T_STD_I32LE = H5T_STD_I32LE();
/** */
public static final long H5T_STD_I64BE = H5T_STD_I64BE();
/** */
public static final long H5T_STD_I64LE = H5T_STD_I64LE();
/** */
public static final long H5T_STD_I8BE = H5T_STD_I8BE();
/** */
public static final long H5T_STD_I8LE = H5T_STD_I8LE();
/** */
public static final long H5T_STD_REF_DSETREG = H5T_STD_REF_DSETREG();
/** */
public static final long H5T_STD_REF_OBJ = H5T_STD_REF_OBJ();
/** */
public static final long H5T_STD_REF = H5T_STD_REF();
/** */
public static final long H5T_STD_U16BE = H5T_STD_U16BE();
/** */
public static final long H5T_STD_U16LE = H5T_STD_U16LE();
/** */
public static final long H5T_STD_U32BE = H5T_STD_U32BE();
/** */
public static final long H5T_STD_U32LE = H5T_STD_U32LE();
/** */
public static final long H5T_STD_U64BE = H5T_STD_U64BE();
/** */
public static final long H5T_STD_U64LE = H5T_STD_U64LE();
/** */
public static final long H5T_STD_U8BE = H5T_STD_U8BE();
/** */
public static final long H5T_STD_U8LE = H5T_STD_U8LE();
/** */
public static final int H5T_STR_ERROR = H5T_STR_ERROR();
/** */
public static final int H5T_STR_NULLPAD = H5T_STR_NULLPAD();
/** */
public static final int H5T_STR_NULLTERM = H5T_STR_NULLTERM();
/** */
public static final int H5T_STR_RESERVED_10 = H5T_STR_RESERVED_10();
/** */
public static final int H5T_STR_RESERVED_11 = H5T_STR_RESERVED_11();
/** */
public static final int H5T_STR_RESERVED_12 = H5T_STR_RESERVED_12();
/** */
public static final int H5T_STR_RESERVED_13 = H5T_STR_RESERVED_13();
/** */
public static final int H5T_STR_RESERVED_14 = H5T_STR_RESERVED_14();
/** */
public static final int H5T_STR_RESERVED_15 = H5T_STR_RESERVED_15();
/** */
public static final int H5T_STR_RESERVED_3 = H5T_STR_RESERVED_3();
/** */
public static final int H5T_STR_RESERVED_4 = H5T_STR_RESERVED_4();
/** */
public static final int H5T_STR_RESERVED_5 = H5T_STR_RESERVED_5();
/** */
public static final int H5T_STR_RESERVED_6 = H5T_STR_RESERVED_6();
/** */
public static final int H5T_STR_RESERVED_7 = H5T_STR_RESERVED_7();
/** */
public static final int H5T_STR_RESERVED_8 = H5T_STR_RESERVED_8();
/** */
public static final int H5T_STR_RESERVED_9 = H5T_STR_RESERVED_9();
/** */
public static final int H5T_STR_SPACEPAD = H5T_STR_SPACEPAD();
/** */
public static final int H5T_STRING = H5T_STRING();
/** */
public static final int H5T_TIME = H5T_TIME();
/** */
public static final long H5T_UNIX_D32BE = H5T_UNIX_D32BE();
/** */
public static final long H5T_UNIX_D32LE = H5T_UNIX_D32LE();
/** */
public static final long H5T_UNIX_D64BE = H5T_UNIX_D64BE();
/** */
public static final long H5T_UNIX_D64LE = H5T_UNIX_D64LE();
/** */
public static final long H5T_VARIABLE = H5T_VARIABLE();
/** */
public static final int H5T_VLEN = H5T_VLEN();
/** */
public static final int H5T_VL_T = H5T_VL_T();
/** */
public static final int H5VL_CAP_FLAG_NONE = H5VL_CAP_FLAG_NONE();
/** */
public static final int H5VL_CAP_FLAG_THREADSAFE = H5VL_CAP_FLAG_THREADSAFE();
/** */
public static final long H5VL_NATIVE = H5VL_NATIVE();
/** */
public static final String H5VL_NATIVE_NAME = H5VL_NATIVE_NAME();
/** */
public static final int H5VL_NATIVE_VALUE = H5VL_NATIVE_VALUE();
/** */
public static final int H5VL_NATIVE_VERSION = H5VL_NATIVE_VERSION();
/** */
public static final int H5_VOL_INVALID = H5_VOL_INVALID();
/** */
public static final int H5_VOL_NATIVE = H5_VOL_NATIVE();
/** */
public static final int H5_VOL_RESERVED = H5_VOL_RESERVED();
/** */
public static final int H5_VOL_MAX = H5_VOL_MAX();
/** Return values for filter callback function */
java/src/hdf/hdf5lib/HDF5GroupInfo.java
+8 -1
View File
@@ -41,6 +41,8 @@ public class HDF5GroupInfo {
long mtime;
int linklen;
/** Container for the information reported about an HDF5 Object
* from the H5Gget_obj_info() method */
public HDF5GroupInfo() {
fileno = new long[2];
objno = new long[2];
@@ -88,27 +90,32 @@ public class HDF5GroupInfo {
linklen = 0;
}
/* accessors */
/** fileno accessors */
public long[] getFileno() {
return fileno;
}
/** accessors */
public long[] getObjno() {
return objno;
}
/** accessors */
public int getType() {
return type;
}
/** accessors */
public int getNlink() {
return nlink;
}
/** accessors */
public long getMtime() {
return mtime;
}
/** accessors */
public int getLinklen() {
return linklen;
}
java/src/hdf/hdf5lib/structs/H5A_info_t.java
+8 -4
View File
@@ -21,10 +21,14 @@ import java.io.Serializable;
*/
public class H5A_info_t implements Serializable{
private static final long serialVersionUID = 2791443594041667613L;
public boolean corder_valid; // Indicate if creation order is valid
public long corder; // Creation order of attribute
public int cset; // Character set of attribute name
public long data_size; // Size of raw data
/** Indicate if creation order is valid */
public boolean corder_valid;
/** Creation order of attribute */
public long corder;
/** Character set of attribute name */
public int cset;
/** Size of raw data */
public long data_size;
H5A_info_t(boolean corder_valid, long corder, int cset, long data_size) {
this.corder_valid = corder_valid;
java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
+2
View File
@@ -21,7 +21,9 @@ import java.io.Serializable;
*/
public class H5_ih_info_t implements Serializable {
private static final long serialVersionUID = -142238015615462707L;
/** */
public long index_size; /* btree and/or list */
/** */
public long heap_size;
H5_ih_info_t (long index_size, long heap_size)
java/src/jni/exceptionImp.c
+23 -10
View File
@@ -262,11 +262,24 @@ done:
* exception.
*/
jboolean
h5outOfMemory(JNIEnv *env, const char *functName)
h5outOfMemory(JNIEnv *env, const char *message)
{
return H5JNIErrorClass(env, functName, "java/lang/OutOfMemoryError");
return H5JNIErrorClass(env, message, "java/lang/OutOfMemoryError");
} /* end h5outOfMemory() */
/*
* Create and throw an 'AssertionError'
*
* Note: This routine never returns from the 'throw',
* and the Java native method immediately raises the
* exception.
*/
jboolean
h5assertion(JNIEnv *env, const char *message)
{
return H5JNIErrorClass(env, message, "java/lang/AssertionError");
} /* end h5assertion() */
/*
* A fatal error in a JNI call
* Create and throw an 'InternalError'
@@ -276,9 +289,9 @@ h5outOfMemory(JNIEnv *env, const char *functName)
* exception.
*/
jboolean
h5JNIFatalError(JNIEnv *env, const char *functName)
h5JNIFatalError(JNIEnv *env, const char *message)
{
return H5JNIErrorClass(env, functName, "java/lang/InternalError");
return H5JNIErrorClass(env, message, "java/lang/InternalError");
} /* end h5JNIFatalError() */
/*
@@ -290,9 +303,9 @@ h5JNIFatalError(JNIEnv *env, const char *functName)
* exception.
*/
jboolean
h5nullArgument(JNIEnv *env, const char *functName)
h5nullArgument(JNIEnv *env, const char *message)
{
return H5JNIErrorClass(env, functName, "java/lang/NullPointerException");
return H5JNIErrorClass(env, message, "java/lang/NullPointerException");
} /* end h5nullArgument() */
/*
@@ -304,9 +317,9 @@ h5nullArgument(JNIEnv *env, const char *functName)
* exception.
*/
jboolean
h5badArgument(JNIEnv *env, const char *functName)
h5badArgument(JNIEnv *env, const char *message)
{
return H5JNIErrorClass(env, functName, "java/lang/IllegalArgumentException");
return H5JNIErrorClass(env, message, "java/lang/IllegalArgumentException");
} /* end h5badArgument() */
/*
@@ -318,9 +331,9 @@ h5badArgument(JNIEnv *env, const char *functName)
* exception.
*/
jboolean
h5unimplemented(JNIEnv *env, const char *functName)
h5unimplemented(JNIEnv *env, const char *message)
{
return H5JNIErrorClass(env, functName, "java/lang/UnsupportedOperationException");
return H5JNIErrorClass(env, message, "java/lang/UnsupportedOperationException");
} /* end h5unimplemented() */
/* h5raiseException(). This routine is called to generate
java/src/jni/h5Constants.c
+4 -4
View File
@@ -1403,7 +1403,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1DIRECT(JNIEnv *env, jclass cls)
#ifdef H5_HAVE_DIRECT
return H5FD_DIRECT;
#else
return -1;
return H5I_INVALID_HID;
#endif
}
JNIEXPORT jlong JNICALL
@@ -1417,7 +1417,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1HDFS(JNIEnv *env, jclass cls)
#ifdef H5_HAVE_LIBHDFS
return H5FD_HDFS;
#else
return -1;
return H5I_INVALID_HID;
#endif
}
JNIEXPORT jlong JNICALL
@@ -1446,7 +1446,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1ROS3(JNIEnv *env, jclass cls)
#ifdef H5_HAVE_ROS3_VFD
return H5FD_ROS3;
#else
return -1;
return H5I_INVALID_HID;
#endif
}
JNIEXPORT jlong JNICALL
@@ -1460,7 +1460,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1WINDOWS(JNIEnv *env, jclass cls)
#ifdef H5_HAVE_WINDOWS
return H5FD_DIRECT;
#else
return -1;
return H5I_INVALID_HID;
#endif
}
JNIEXPORT jint JNICALL
java/src/jni/h5aImp.c
+2 -2
View File
@@ -1133,7 +1133,7 @@ H5AreadVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf)
for (i = 0; i < (size_t)n; i++) {
h5str.s[0] = '\0';
if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *)readBuf)[i * typeSize]), typeSize, 0))
if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *)readBuf)[i * typeSize]), 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
@@ -1425,7 +1425,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref(JNIEnv *env, jclass clss, jlong attr_id, j
for (i = 0; i < n; i++) {
h5str.s[0] = '\0';
if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0, 0))
if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
java/src/jni/h5dImp.c
+2 -3
View File
@@ -1290,7 +1290,7 @@ H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid
for (i = 0; i < (size_t)n; i++) {
h5str.s[0] = '\0';
if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *)readBuf)[i * typeSize]), typeSize, 0))
if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *)readBuf)[i * typeSize]), 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
@@ -1669,8 +1669,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref(JNIEnv *env, jclass clss, jlong dataset_id
for (i = 0; i < n; i++) {
h5str.s[0] = '\0';
if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0,
0))
if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
java/src/jni/h5jni.h
+14 -7
View File
@@ -267,9 +267,10 @@ extern jboolean h5JNIFatalError(JNIEnv *env, const char *);
extern jboolean h5nullArgument(JNIEnv *env, const char *);
extern jboolean h5badArgument(JNIEnv *env, const char *);
extern jboolean h5outOfMemory(JNIEnv *env, const char *);
extern jboolean h5assertion(JNIEnv *env, const char *);
extern jboolean h5unimplemented(JNIEnv *env, const char *);
extern jboolean h5libraryError(JNIEnv *env);
extern jboolean h5raiseException(JNIEnv *env, const char *, const char *);
extern jboolean h5unimplemented(JNIEnv *env, const char *functName);
/*
* The following macros are to facilitate immediate cleanup+return
@@ -305,6 +306,18 @@ extern jboolean h5unimplemented(JNIEnv *env, const char *functName);
goto done; \
} while (0)
#define H5_ASSERTION_ERROR(env, message) \
do { \
h5assertion(env, message); \
goto done; \
} while (0)
#define H5_UNIMPLEMENTED(env, message) \
do { \
h5unimplemented(env, message); \
goto done; \
} while (0)
#define H5_LIBRARY_ERROR(env) \
do { \
h5libraryError(env); \
@@ -317,12 +330,6 @@ extern jboolean h5unimplemented(JNIEnv *env, const char *functName);
goto done; \
} while (0)
#define H5_UNIMPLEMENTED(env, message) \
do { \
h5unimplemented(env, message); \
goto done; \
} while (0)
/* implemented at H5.c */
extern jint get_enum_value(JNIEnv *env, jobject enum_obj);
extern jobject get_enum_object(JNIEnv *env, const char *enum_class_name, jint enum_val,
java/src/jni/h5util.c
+422 -387
View File
@@ -28,8 +28,6 @@ extern "C" {
#include "hdf5.h"
#include "h5util.h"
#define SKIP_UNUSED_DUMP_ROUTINES
/* size of hyperslab buffer when a dataset is bigger than H5TOOLS_MALLOCSIZE */
hsize_t H5TOOLS_BUFSIZE = (32 * 1024 * 1024); /* 32 MB */
int H5TOOLS_TEXT_BLOCK = 16; /* Number of elements on a line in a text export file */
@@ -54,18 +52,19 @@ void * edata;
/* Local Prototypes */
/********************/
#ifndef SKIP_UNUSED_DUMP_ROUTINES
static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
#endif
static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj,
int expand_data);
static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj,
int expand_data);
static int h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id);
static int h5str_is_zero(const void *_mem, size_t size);
static hid_t h5str_get_native_type(hid_t type);
static hid_t h5str_get_little_endian_type(hid_t type);
static hid_t h5str_get_big_endian_type(hid_t type);
static htri_t h5str_detect_vlen(hid_t tid);
static htri_t h5str_detect_vlen_str(hid_t tid);
static int h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem,
hsize_t nelmts);
static int h5str_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem,
hsize_t nelmts);
static int h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem,
hsize_t block_nelmts);
static int render_bin_output_region_data_blocks(FILE *stream, hid_t region_id, hid_t container, int ndims,
@@ -185,13 +184,14 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
H5T_class_t tclass = H5T_NO_CLASS;
const char delimiter[] = " ," H5_COMPOUND_BEGIN_INDICATOR H5_COMPOUND_END_INDICATOR
H5_ARRAY_BEGIN_INDICATOR H5_ARRAY_END_INDICATOR H5_VLEN_BEGIN_INDICATOR H5_VLEN_END_INDICATOR;
size_t typeSize = 0;
hid_t mtid = H5I_INVALID_HID;
char * this_str = NULL;
char * token;
char * cptr = NULL;
int n;
size_t retVal = 0;
size_t retVal = 0;
size_t typeSize = 0;
hid_t mtid = H5I_INVALID_HID;
char * this_str = NULL;
char * cptr = NULL;
char * token;
int n;
if (!in_str)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_convert: in_str is NULL");
@@ -239,7 +239,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_
case sizeof(long double): {
long double tmp_ldouble = 0.0;
sscanf(token, "%Lf", &tmp_ldouble);
sscanf(token, "%Lg", &tmp_ldouble);
HDmemcpy(cptr, &tmp_ldouble, sizeof(long double));
break;
}
@@ -644,27 +644,27 @@ done:
*
* Purpose: Object reference -- show the name of the referenced object.
*
* Return: Nothing
* Return: SUCCEED or FAIL
*-------------------------------------------------------------------------
*/
void
h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref_p)
int
h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p)
{
ssize_t buf_size;
char * ref_name = NULL;
const H5R_ref_t *ref_vp = (H5R_ref_t *)ref_p;
ssize_t buf_size;
char * ref_name = NULL;
H5R_ref_t *ref_vp = (H5R_ref_t *)ref_p;
UNUSED(container);
int ret_value = FAIL;
if (!h5str_append(out_str, " \""))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
buf_size = H5Rget_file_name(ref_vp, NULL, 0);
if (buf_size) {
ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1);
if (H5Rget_file_name(ref_vp, ref_name, buf_size + 1) >= 0) {
ref_name[buf_size] = '\0';
if (!h5str_append(out_str, ref_name))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
HDfree(ref_name);
ref_name = NULL;
@@ -676,7 +676,7 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref
if (H5Rget_obj_name(ref_vp, H5P_DEFAULT, ref_name, buf_size + 1) >= 0) {
ref_name[buf_size] = '\0';
if (!h5str_append(out_str, ref_name))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
HDfree(ref_name);
ref_name = NULL;
@@ -689,17 +689,61 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref
if (H5Rget_attr_name(ref_vp, ref_name, buf_size + 1) >= 0) {
ref_name[buf_size] = '\0';
if (!h5str_append(out_str, ref_name))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
HDfree(ref_name);
ref_name = NULL;
}
}
if (!h5str_append(out_str, "\""))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
ret_value = SUCCEED;
done:
if (ref_name)
HDfree(ref_name);
return ret_value;
} /* h5str_sprint_reference */
int
h5str_region_dataset(JNIEnv *env, h5str_t *out_str, H5R_ref_t *ref_vp, int expand_data)
{
hid_t new_obj_id = H5I_INVALID_HID;
hid_t new_obj_sid = H5I_INVALID_HID;
H5S_sel_type region_type;
int ret_value = FAIL;
if ((new_obj_id = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) < 0) {
ret_value = SUCCEED; /* An uncreated region is a valid state */
goto done;
}
if ((new_obj_sid = H5Ropen_region(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if ((region_type = H5Sget_select_type(new_obj_sid)) > H5S_SEL_ERROR) {
if (H5S_SEL_POINTS == region_type) {
if (h5str_dump_region_points(ENVONLY, out_str, new_obj_sid, new_obj_id, expand_data) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
else if (H5S_SEL_HYPERSLABS == region_type) {
if (h5str_dump_region_blocks(ENVONLY, out_str, new_obj_sid, new_obj_id, expand_data) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
}
ret_value = SUCCEED;
done:
if (new_obj_sid >= 0)
if (H5Sclose(new_obj_sid) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (new_obj_id >= 0)
if (H5Dclose(new_obj_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
return ret_value;
}
/*
@@ -710,8 +754,7 @@ done:
* FAILURE: 0
*/
size_t
h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len,
int expand_data)
h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, int expand_data)
{
unsigned char *ucptr = (unsigned char *)in_buf;
static char fmt_llong[8], fmt_ullong[8];
@@ -719,7 +762,6 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
size_t typeSize = 0;
H5T_sign_t nsign = H5T_SGN_ERROR;
hid_t mtid = H5I_INVALID_HID;
hid_t obj = H5I_INVALID_HID;
char * cptr = (char *)in_buf;
char * this_str = NULL;
int n;
@@ -734,8 +776,6 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
H5_LIBRARY_ERROR(ENVONLY);
if (!(typeSize = H5Tget_size(tid)))
H5_LIBRARY_ERROR(ENVONLY);
if (!(nsign = H5Tget_sign(tid)))
H5_LIBRARY_ERROR(ENVONLY);
/* Build default formats for long long types */
if (!fmt_llong[0]) {
@@ -744,7 +784,6 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
if (HDsnprintf(fmt_ullong, sizeof(fmt_ullong), "%%%su", H5_PRINTF_LL_WIDTH) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure");
} /* end if */
switch (tclass) {
case H5T_FLOAT: {
switch (typeSize) {
@@ -805,6 +844,8 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
htri_t is_variable;
char * tmp_str;
typeSize = 0;
if ((is_variable = H5Tis_variable_str(tid)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1003,7 +1044,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
H5_LIBRARY_ERROR(ENVONLY);
if (!h5str_append(out_str, H5_COMPOUND_BEGIN_INDICATOR))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
for (i = 0; i < (unsigned)n; i++) {
offset = H5Tget_member_offset(tid, i);
@@ -1011,12 +1052,12 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
if ((mtid = H5Tget_member_type(tid, i)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], in_buf_len, expand_data))
if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], expand_data))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if ((i + 1) < (unsigned)n)
if (!h5str_append(out_str, ", "))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
if (H5Tclose(mtid) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1024,7 +1065,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
}
if (!h5str_append(out_str, H5_COMPOUND_END_INDICATOR))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
break;
}
@@ -1034,7 +1075,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
if (H5Tenum_nameof(tid, cptr, enum_name, sizeof enum_name) >= 0) {
if (!h5str_append(out_str, enum_name))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
else {
size_t i;
@@ -1057,130 +1098,120 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
}
case H5T_REFERENCE: {
if (h5str_is_zero(cptr, typeSize)) {
if (!h5str_append(out_str, "NULL"))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
}
if (H5Tequal(tid, H5T_STD_REF)) {
H5O_type_t obj_type = -1; /* Object type */
H5R_type_t ref_type; /* Reference type */
const H5R_ref_t *ref_vp = (H5R_ref_t *)cptr;
hid_t new_obj_id = H5I_INVALID_HID;
H5O_type_t obj_type = -1; /* Object type */
H5R_type_t ref_type; /* Reference type */
H5R_ref_t *ref_vp = (H5R_ref_t *)cptr;
ref_type = H5Rget_type(ref_vp);
H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type);
switch (ref_type) {
case H5R_OBJECT1: {
/* Object references -- show the type and OID of the referenced object. */
H5O_info2_t oi;
case H5R_OBJECT1:
if (H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type) >= 0) {
switch (obj_type) {
case H5O_TYPE_DATASET:
if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
if ((obj = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
H5Oget_info3(obj, &oi, H5O_INFO_BASIC);
if (H5Oclose(obj) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
case H5O_TYPE_GROUP:
case H5O_TYPE_NAMED_DATATYPE:
case H5O_TYPE_MAP:
case H5O_TYPE_UNKNOWN:
case H5O_TYPE_NTYPES:
default: {
/* Object references -- show the type and OID of the referenced object. */
H5O_info2_t oi;
char * obj_tok_str = NULL;
if ((new_obj_id = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >=
0) {
H5Oget_info3(new_obj_id, &oi, H5O_INFO_BASIC);
H5Otoken_to_str(new_obj_id, &oi.token, &obj_tok_str);
if (H5Dclose(new_obj_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
}
else
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (this_str = (char *)HDmalloc(14)))
H5_OUT_OF_MEMORY_ERROR(
ENVONLY, "h5str_sprintf: failed to allocate string buffer");
if (HDsprintf(this_str, "%u-", (unsigned)oi.type) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
if (!h5str_append(out_str, this_str))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
HDfree(this_str);
this_str = NULL;
/* Print OID */
{
char *token_str;
H5Otoken_to_str(tid, &oi.token, &token_str);
if (NULL == (this_str = (char *)HDmalloc(64 + strlen(token_str) + 1)))
H5_OUT_OF_MEMORY_ERROR(
ENVONLY, "h5str_sprintf: failed to allocate string buffer");
if (HDsprintf(this_str, "%lu:%s", oi.fileno, token_str) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
H5free_memory(token_str);
}
} break;
} /* end switch */
}
else
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (this_str = (char *)HDmalloc(14)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
if (HDsprintf(this_str, "%u-", (unsigned)oi.type) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
if (!h5str_append(out_str, this_str))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
HDfree(this_str);
this_str = NULL;
switch (obj_type) {
case H5O_TYPE_GROUP:
if (!h5str_append(out_str, H5_TOOLS_GROUP))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
case H5O_TYPE_DATASET:
if (!h5str_append(out_str, H5_TOOLS_DATASET))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
case H5O_TYPE_NAMED_DATATYPE:
if (!h5str_append(out_str, H5_TOOLS_DATATYPE))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
case H5O_TYPE_MAP:
case H5O_TYPE_UNKNOWN:
case H5O_TYPE_NTYPES:
default:
break;
} /* end switch */
H5Oclose(obj);
h5str_sprint_reference(ENVONLY, out_str, container, ref_vp);
/* Print OID */
{
char *token_str;
H5Otoken_to_str(tid, &oi.token, &token_str);
if (NULL == (this_str = (char *)HDmalloc(64 + strlen(token_str) + 1)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_sprintf: failed to allocate string buffer");
if (HDsprintf(this_str, "%lu:%s", oi.fileno, token_str) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure");
H5free_memory(token_str);
}
}
break;
H5_LIBRARY_ERROR(ENVONLY);
break;
case H5R_DATASET_REGION1:
if (!h5str_append(out_str, H5_TOOLS_DATASET))
if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr);
break;
case H5R_OBJECT2:
switch (obj_type) {
case H5O_TYPE_GROUP:
if (!h5str_append(out_str, H5_TOOLS_GROUP))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
if (H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type) >= 0) {
switch (obj_type) {
case H5O_TYPE_GROUP:
break;
case H5O_TYPE_DATASET:
if (!h5str_append(out_str, H5_TOOLS_DATASET))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
case H5O_TYPE_DATASET:
if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
case H5O_TYPE_NAMED_DATATYPE:
if (!h5str_append(out_str, H5_TOOLS_DATATYPE))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
break;
case H5O_TYPE_NAMED_DATATYPE:
break;
case H5O_TYPE_MAP:
case H5O_TYPE_UNKNOWN:
case H5O_TYPE_NTYPES:
default:
break;
} /* end switch */
h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr);
case H5O_TYPE_MAP:
case H5O_TYPE_UNKNOWN:
case H5O_TYPE_NTYPES:
default:
break;
} /* end switch */
}
else
H5_ASSERTION_ERROR(ENVONLY, "h5str_sprintf: H5R_OBJECT2 failed");
break;
case H5R_DATASET_REGION2:
if (!h5str_append(out_str, H5_TOOLS_DATASET))
if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr);
break;
case H5R_ATTR:
if (!h5str_append(out_str, H5_TOOLS_ATTRIBUTE))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr);
if ((new_obj_id = H5Ropen_attr(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
if (h5str_dump_region_attribute(ENVONLY, out_str, new_obj_id) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (H5Aclose(new_obj_id) < 0)
H5_LIBRARY_ERROR(ENVONLY);
}
break;
case H5R_BADTYPE:
case H5R_MAXTYPE:
default:
break;
} /* end switch */
if (H5Rdestroy(ref_vp) < 0)
H5_LIBRARY_ERROR(ENVONLY);
}
else if (H5Tequal(tid, H5T_STD_REF_DSETREG)) {
/* (H5R_DSET_REG_REF_BUF_SIZE == typeSize) */
@@ -1200,7 +1231,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
int rank = 0;
if (!h5str_append(out_str, H5_ARRAY_BEGIN_INDICATOR))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
if ((mtid = H5Tget_super(tid)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1218,17 +1249,16 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
total_elmts *= dims[i];
for (i = 0; i < total_elmts; i++) {
if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), in_buf_len,
expand_data))
if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), expand_data))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if ((i + 1) < total_elmts)
if (!h5str_append(out_str, ", "))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
if (!h5str_append(out_str, H5_ARRAY_END_INDICATOR))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
if (H5Tclose(mtid) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1249,20 +1279,20 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
H5_LIBRARY_ERROR(ENVONLY);
if (!h5str_append(out_str, H5_VLEN_BEGIN_INDICATOR))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
for (i = 0; i < (unsigned)vl_buf->len; i++) {
if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(((char *)vl_buf->p)[i * baseSize]),
vl_buf->len, expand_data))
expand_data))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if ((i + 1) < (unsigned)vl_buf->len)
if (!h5str_append(out_str, ", "))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
if (!h5str_append(out_str, H5_VLEN_END_INDICATOR))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
if (H5Tclose(mtid) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1304,7 +1334,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i
if (this_str) {
if (!h5str_append(out_str, this_str))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
HDfree(this_str);
this_str = NULL;
@@ -1405,12 +1435,12 @@ h5str_print_region_data_blocks(JNIEnv *env, hid_t region_id, h5str_t *str, int n
for (numindex = 0; numindex < numelem; numindex++) {
if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + numindex * type_size),
0, 1))
1))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (numindex + 1 < numelem)
if (!h5str_append(str, ", "))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
} /* end for (jndx = 0; jndx < numelem; jndx++, region_elmtno++, ctx.cur_elmt++) */
} /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
@@ -1434,7 +1464,7 @@ done:
} /* end h5str_print_region_data_blocks */
int
h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t region_id, int expand_data)
{
hssize_t nblocks;
hsize_t alloc_size;
@@ -1443,29 +1473,31 @@ h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t reg
hid_t type_id = H5I_INVALID_HID;
int ndims = -1;
int ret_value = FAIL;
int i;
char tmp_str[256];
/*
* This function fails if the region does not have blocks.
*/
H5E_BEGIN_TRY { nblocks = H5Sget_select_hyper_nblocks(region); }
H5E_BEGIN_TRY { nblocks = H5Sget_select_hyper_nblocks(region_space); }
H5E_END_TRY;
if (nblocks < 0)
H5_LIBRARY_ERROR(ENVONLY);
if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
if (nblocks <= 0) {
ret_value = SUCCEED;
goto done;
}
if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/* Print block information */
alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
if (alloc_size == (hsize_t)((size_t)alloc_size)) {
if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_dump_region_blocks_data: failed to allocate region block buffer");
if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer");
if (H5Sget_select_hyper_blocklist(region, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (expand_data) {
if ((dtype = H5Dget_type(region_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1474,8 +1506,51 @@ h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t reg
if (h5str_print_region_data_blocks(ENVONLY, region_id, str, ndims, type_id, nblocks, ptdata) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
}
else {
if (!h5str_append(str, " REGION_TYPE BLOCK"))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
if (!h5str_append(str, " {"))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
for (i = 0; i < nblocks; i++) {
int j;
if (!h5str_append(str, " "))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
/* Start coordinates and opposite corner */
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", (unsigned long)ptdata[i * 2 * ndims + j]) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure");
if (!h5str_append(str, tmp_str))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
if (HDsprintf(tmp_str, "%s%lu", j ? "," : ")-(",
(unsigned long)ptdata[i * 2 * ndims + j + ndims]) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure");
if (!h5str_append(str, tmp_str))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
if (!h5str_append(str, ") "))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
tmp_str[0] = '\0';
}
if (!h5str_append(str, " }"))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
ret_value = SUCCEED;
done:
@@ -1486,96 +1561,8 @@ done:
if (ptdata)
HDfree(ptdata);
return ret_value;
} /* end h5str_dump_region_blocks_data */
#ifndef SKIP_UNUSED_DUMP_ROUTINES
static int
h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
hssize_t nblocks;
hsize_t alloc_size;
hsize_t *ptdata = NULL;
char tmp_str[256];
int ndims = -1;
int ret_value = FAIL;
UNUSED(region_id);
/*
* This function fails if the region does not have blocks.
*/
H5E_BEGIN_TRY { nblocks = H5Sget_select_hyper_nblocks(region); }
H5E_END_TRY;
if (nblocks < 0)
H5_LIBRARY_ERROR(ENVONLY);
if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/* Print block information */
alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]);
if (alloc_size == (hsize_t)((size_t)alloc_size)) {
int i;
if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_dump_region_blocks: failed to allocate region block buffer");
if (H5Sget_select_hyper_blocklist(region, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (!h5str_append(str, " {"))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
for (i = 0; i < nblocks; i++) {
int j;
if (!h5str_append(str, " "))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
/* Start coordinates and opposite corner */
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", (unsigned long)ptdata[i * 2 * ndims + j]) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure");
if (!h5str_append(str, tmp_str))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
if (HDsprintf(tmp_str, "%s%lu", j ? "," : ")-(",
(unsigned long)ptdata[i * 2 * ndims + j + ndims]) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure");
if (!h5str_append(str, tmp_str))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
if (!h5str_append(str, ") "))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
tmp_str[0] = '\0';
}
if (!h5str_append(str, " }"))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */
ret_value = SUCCEED;
done:
if (ptdata)
HDfree(ptdata);
return ret_value;
} /* end h5str_dump_region_blocks */
#endif
/*-------------------------------------------------------------------------
* Purpose: Print the data values from a dataset referenced by region points.
@@ -1628,12 +1615,12 @@ h5str_print_region_data_points(JNIEnv *env, hid_t region_space, hid_t region_id,
if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 0, 1))
if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 1))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (jndx + 1 < (size_t)npoints)
if (!h5str_append(str, ", "))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
} /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */
ret_value = SUCCEED;
@@ -1650,51 +1637,81 @@ done:
} /* end h5str_print_region_data_points */
int
h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t region_id, int expand_data)
{
hssize_t npoints;
hsize_t alloc_size;
hssize_t npoints = -1;
hsize_t *ptdata = NULL;
hid_t dtype = H5I_INVALID_HID;
hid_t type_id = H5I_INVALID_HID;
int ndims = -1;
int ret_value = FAIL;
int i;
char tmp_str[256];
/*
* This function fails if the region does not have points.
*/
H5E_BEGIN_TRY { npoints = H5Sget_select_elem_npoints(region); }
H5E_BEGIN_TRY { npoints = H5Sget_select_elem_npoints(region_space); }
H5E_END_TRY;
if (npoints < 0)
H5_LIBRARY_ERROR(ENVONLY);
if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
if (npoints <= 0) {
ret_value = SUCCEED;
goto done;
}
if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/* Print point information */
if (npoints > 0) {
alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
if (alloc_size == (hsize_t)((size_t)alloc_size)) {
if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size)))
H5_OUT_OF_MEMORY_ERROR(
ENVONLY, "h5str_dump_region_points_data: failed to allocate region point data buffer");
alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_dump_region_points: failed to allocate region point data buffer");
if (H5Sget_select_elem_pointlist(region, (hsize_t)0, (hsize_t)npoints, ptdata) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (H5Sget_select_elem_pointlist(region_space, (hsize_t)0, (hsize_t)npoints, ptdata) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if ((dtype = H5Dget_type(region_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (expand_data) {
if ((dtype = H5Dget_type(region_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (h5str_print_region_data_points(ENVONLY, region, region_id, str, ndims, type_id, npoints,
ptdata) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
if (h5str_print_region_data_points(ENVONLY, region_space, region_id, str, ndims, type_id, npoints,
ptdata) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
else {
if (!h5str_append(str, " REGION_TYPE POINT"))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
if (!h5str_append(str, " {"))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
for (i = 0; i < npoints; i++) {
int j;
if (!h5str_append(str, " "))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", (unsigned long)(ptdata[i * ndims + j])) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsprintf failure");
if (!h5str_append(str, tmp_str))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
} /* end for (j = 0; j < ndims; j++) */
if (!h5str_append(str, ") "))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
} /* end for (i = 0; i < npoints; i++) */
if (!h5str_append(str, " }"))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
ret_value = SUCCEED;
done:
@@ -1705,85 +1722,8 @@ done:
if (ptdata)
HDfree(ptdata);
return ret_value;
} /* end h5str_dump_region_points_data */
#ifndef SKIP_UNUSED_DUMP_ROUTINES
static int
h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id)
{
hssize_t npoints;
hsize_t alloc_size;
hsize_t *ptdata = NULL;
char tmp_str[256];
int ndims = -1;
int ret_value = FAIL;
UNUSED(region_id);
/*
* This function fails if the region does not have points.
*/
H5E_BEGIN_TRY { npoints = H5Sget_select_elem_npoints(region); }
H5E_END_TRY;
if (npoints < 0)
H5_LIBRARY_ERROR(ENVONLY);
if ((ndims = H5Sget_simple_extent_ndims(region)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/* Print point information */
if (npoints > 0) {
int i;
alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]);
if (alloc_size == (hsize_t)((size_t)alloc_size)) {
if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size)))
H5_OUT_OF_MEMORY_ERROR(ENVONLY,
"h5str_dump_region_points: failed to allocate region point buffer");
if (H5Sget_select_elem_pointlist(region, (hsize_t)0, (hsize_t)npoints, ptdata) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (!h5str_append(str, " {"))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
for (i = 0; i < npoints; i++) {
int j;
if (!h5str_append(str, " "))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
for (j = 0; j < ndims; j++) {
tmp_str[0] = '\0';
if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", (unsigned long)(ptdata[i * ndims + j])) <
0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsprintf failure");
if (!h5str_append(str, tmp_str))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* end for (j = 0; j < ndims; j++) */
if (!h5str_append(str, ") "))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* end for (i = 0; i < npoints; i++) */
if (!h5str_append(str, " }"))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
} /* end if (alloc_size == (hsize_t)((size_t) alloc_size)) */
} /* end if (npoints > 0) */
ret_value = SUCCEED;
done:
if (ptdata)
HDfree(ptdata);
return ret_value;
} /* end h5str_dump_region_points */
#endif
static int
h5str_is_zero(const void *_mem, size_t size)
@@ -2308,30 +2248,22 @@ h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hs
/* Region data */
for (block_index = 0; block_index < block_nelmts; block_index++) {
mem = ((unsigned char *)_mem) + block_index * size;
if ((region_id = H5Ropen_object((const H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) < 0)
if ((region_id = H5Ropen_object((H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) < 0)
continue;
else {
if ((region_space =
H5Ropen_region((const H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
if (!h5str_is_zero(mem, H5Tget_size(H5T_STD_REF))) {
region_type = H5Sget_select_type(region_space);
if (region_type == H5S_SEL_POINTS)
ret_value = render_bin_output_region_points(stream, region_space,
region_id, container);
else
ret_value = render_bin_output_region_blocks(stream, region_space,
region_id, container);
}
H5Sclose(region_space);
} /* end if (region_space >= 0) */
H5Dclose(region_id);
}
if ((region_type = H5Sget_select_type(region_space)) < 0) {
if ((region_space = H5Ropen_region((H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
if (!h5str_is_zero(mem, H5Tget_size(H5T_STD_REF))) {
region_type = H5Sget_select_type(region_space);
if (region_type == H5S_SEL_POINTS)
ret_value = render_bin_output_region_points(stream, region_space, region_id,
container);
else if (region_type == H5S_SEL_HYPERSLABS)
ret_value = render_bin_output_region_blocks(stream, region_space, region_id,
container);
}
H5Sclose(region_space);
H5Dclose(region_id);
continue;
}
} /* end if (region_space >= 0) */
H5Dclose(region_id);
if (ret_value < 0)
break;
}
@@ -2711,6 +2643,109 @@ done:
return ret_value;
} /* end render_bin_output_region_points */
/*-------------------------------------------------------------------------
* Purpose: Print some values from an attribute referenced by object reference.
*
* Parameters Description:
* FILE *buffer is the string into which to render
*-------------------------------------------------------------------------
*/
static int
h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id)
{
int ret_value = SUCCEED;
hid_t atype = H5I_INVALID_HID;
hid_t type_id = H5I_INVALID_HID;
hid_t region_space = H5I_INVALID_HID;
hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/
size_t i; /* counter */
size_t size; /* datum size */
int sndims; /* rank of dataspace */
hsize_t p_nelmts; /* total selected elmts */
hsize_t alloc_size;
unsigned char *buf = NULL; /* buffer for raw data */
/* VL data special information */
unsigned int vl_data = 0; /* contains VL datatypes */
if ((region_space = H5Aget_space(region_id)) < 0) {
ret_value = FAIL;
goto done;
}
if ((sndims = H5Sget_simple_extent_ndims(region_space)) < 0) {
ret_value = FAIL;
goto done;
}
/* Assume entire data space to be read */
H5Sget_simple_extent_dims(region_space, total_size, NULL);
p_nelmts = 1;
for (i = 0; i < sndims; i++)
p_nelmts *= total_size[i];
if ((atype = H5Aget_type(region_id)) < 0) {
ret_value = FAIL;
goto done;
}
if ((type_id = H5Tget_native_type(atype, H5T_DIR_DEFAULT)) < 0) {
ret_value = FAIL;
goto done;
}
/* Check if we have VL data in the dataset's datatype */
if (h5str_detect_vlen(type_id) == TRUE)
vl_data = TRUE;
if (!(size = H5Tget_size(type_id))) {
ret_value = FAIL;
goto done;
}
alloc_size = p_nelmts * size;
HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/
if (NULL != (buf = (unsigned char *)HDmalloc((size_t)alloc_size))) {
/* Read the data */
if (H5Aread(region_id, type_id, buf) >= 0) {
for (i = 0; i < p_nelmts; i++) {
size_t bytes_in = 0; /* # of bytes to write */
void * memref = buf + i * size;
if (!(bytes_in = h5str_sprintf(ENVONLY, str, region_id, type_id, memref, 1)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if ((i < p_nelmts - 1) && (bytes_in > 0)) {
if (!h5str_append(str, ", "))
H5_ASSERTION_ERROR(ENVONLY, "Unable to append string.");
}
}
/* Reclaim any VL memory, if necessary */
if (vl_data) {
if (H5Treclaim(type_id, region_space, H5P_DEFAULT, buf) < 0)
H5_LIBRARY_ERROR(ENVONLY);
}
}
else
H5_LIBRARY_ERROR(ENVONLY);
}
done:
if (buf)
HDfree(buf);
if (region_space >= 0)
H5Sclose(region_space);
if (type_id >= 0)
H5Tclose(type_id);
if (atype >= 0)
H5Tclose(type_id);
return ret_value;
}
int
h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order)
{
@@ -2865,7 +2900,7 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order)
H5_LIBRARY_ERROR(ENVONLY);
if (binary_order == 99) {
if (h5tools_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0)
if (h5str_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
else {
@@ -2936,7 +2971,7 @@ H5Tdetect_variable_str(hid_t tid)
} /* end H5Tdetect_variable_str */
static int
h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts)
h5str_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts)
{
unsigned char *mem = (unsigned char *)_mem;
h5str_t buffer; /* string into which to render */
@@ -2956,38 +2991,38 @@ h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type,
h5str_new(&buffer, 32 * size);
if (!buffer.s)
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5tools_dump_simple_data: failed to allocate buffer");
H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_data: failed to allocate buffer");
if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 0, 1)))
if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 1)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (i > 0) {
if ((i > 0) && (bytes_in > 0)) {
if (HDfprintf(stream, ", ") < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure");
if (line_count >= H5TOOLS_TEXT_BLOCK) {
line_count = 0;
if (HDfprintf(stream, "\n") < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure");
}
}
if (HDfprintf(stream, "%s", buffer.s) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure");
h5str_free(&buffer);
} /* end for (i = 0; i < nelmts... */
if (HDfprintf(stream, "\n") < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure");
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure");
done:
if (buffer.s)
h5str_free(&buffer);
return ret_value;
} /* end h5tools_dump_simple_data */
} /* end h5str_dump_simple_data */
/*
* Utility Java APIs
@@ -3041,7 +3076,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex(JNIEnv *env, jclass clss, jlong attr_id, jlon
for (i = 0; i < (size_t)n; i++) {
h5str.s[0] = '\0';
if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0, 0))
if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
@@ -3585,7 +3620,7 @@ Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *env, jclass clss, jstring file_exp
H5_JNI_FATAL_ERROR(ENVONLY, "HDfopen failed");
if ((ret_val = h5str_dump_simple_dset(ENVONLY, stream, dataset_id, binary_order)) < 0)
H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_dset failed");
H5_ASSERTION_ERROR(ENVONLY, "h5str_dump_simple_dset failed");
if (stream) {
HDfclose(stream);
java/src/jni/h5util.h
+2 -4
View File
@@ -41,13 +41,11 @@ extern void h5str_resize(h5str_t *str, size_t new_len);
extern char * h5str_append(h5str_t *str, const char *cstr);
extern size_t h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf,
size_t out_buf_offset);
extern void h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref_p);
extern int h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p);
extern size_t h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf,
size_t in_buf_len, int expand_data);
int expand_data);
extern void h5str_array_free(char **strs, size_t len);
extern int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order);
extern int h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
extern int h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj);
extern htri_t H5Tdetect_variable_str(hid_t tid);
java/test/CMakeLists.txt
+5
View File
@@ -27,6 +27,7 @@ set (HDF5_JAVA_TEST_SOURCES
TestH5Lbasic
TestH5Lcreate
TestH5R
TestH5Rref
TestH5P
TestH5PData
TestH5Pfapl
@@ -93,6 +94,8 @@ HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateL2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateO1.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/h5ex_g_iterateO2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/trefer_reg.h5" "${PROJECT_BINARY_DIR}/trefer_reg.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/trefer_attr.h5" "${PROJECT_BINARY_DIR}/trefer_attr.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_files")
add_custom_target(${HDF5_JAVA_TEST_LIB_TARGET}_files ALL COMMENT "Copying files needed by ${HDF5_JAVA_TEST_LIB_TARGET} tests" DEPENDS ${${HDF5_JAVA_TEST_LIB_TARGET}_files_list})
@@ -208,6 +211,8 @@ if (HDF5_TEST_JAVA AND HDF5_TEST_SERIAL)
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/${voltest}/h5ex_g_iterateL2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/${voltest}/h5ex_g_iterateO1.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/h5ex_g_iterate.orig" "${PROJECT_BINARY_DIR}/${voltest}/h5ex_g_iterateO2.hdf" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/trefer_reg.h5" "${PROJECT_BINARY_DIR}/${voltest}/trefer_reg.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
HDFTEST_COPY_FILE("${HDF5_TOOLS_DIR}/testfiles/trefer_attr.h5" "${PROJECT_BINARY_DIR}/${voltest}/trefer_attr.h5" "${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files")
add_custom_target(${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files ALL COMMENT "Copying files needed by ${HDF5_JAVA_TEST_LIB_TARGET} tests" DEPENDS ${${HDF5_JAVA_TEST_LIB_TARGET}_${voltest}_files_list})
java/test/Makefile.am
+1
View File
@@ -58,6 +58,7 @@ noinst_JAVA = \
TestH5Lbasic.java \
TestH5Lcreate.java \
TestH5R.java \
TestH5Rref.java \
TestH5P.java \
TestH5PData.java \
TestH5Pfapl.java \
java/test/TestAll.java
+1 -1
View File
@@ -25,7 +25,7 @@ import org.junit.runners.Suite;
TestH5Tparams.class, TestH5Tbasic.class, TestH5T.class,
TestH5Dparams.class, TestH5D.class, TestH5Dplist.class,
TestH5Lparams.class, TestH5Lbasic.class, TestH5Lcreate.class,
TestH5R.class,
TestH5R.class, TestH5Rref.class,
TestH5P.class, TestH5PData.class, TestH5Pfapl.class, TestH5Pvirtual.class, TestH5Plist.class,
TestH5Pfapls3.class, TestH5Pfaplhdfs.class,
TestH5A.class,
java/test/TestH5.java
+138 -16
View File
@@ -32,6 +32,7 @@ import java.io.StreamTokenizer;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
@@ -47,22 +48,21 @@ import org.junit.rules.TestName;
*/
public class TestH5 {
@Rule public TestName testname = new TestName();
@Before
public void showTestName() {
System.out.print(testname.getMethodName());
}
@After
public void nextTestName() {
System.out.println();
}
private static final String H5_FILE = "testData.h5";
private static final String EXPORT_FILE = "testExport.txt";
private static final String H5_DREG_FILE = "trefer_reg.h5";
private static final String EXPORT_DREG_FILE = "testExportReg.txt";
private static final String H5_AREG_FILE = "trefer_attr.h5";
private static final String EXPORT_AREG_FILE = "testExportAReg.txt";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
private static final int DIM_BLKS = 36;
private static final int DIM_PNTS = 10;
private static final int DIM_ATTR = 12;
private static final int RANK = 2;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
private final void _deleteFile(String filename) {
@@ -78,7 +78,7 @@ public class TestH5 {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32LE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
@@ -115,22 +115,64 @@ public class TestH5 {
}
}
public final void _closeH5File() throws HDF5LibraryException {
private final void _closeH5File() {
if (H5did >= 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5dsid = -1;
H5did = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
H5dsid = HDF5Constants.H5I_INVALID_HID;
H5did = HDF5Constants.H5I_INVALID_HID;
}
public void _openH5File(String filename, String dsetname) {
try {
H5fid = H5.H5Fopen(filename,
HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5._openH5file: " + err);
}
assertTrue("TestH5._openH5file: H5.H5Fopen: ", H5fid >= 0);
try {
H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5._openH5file: " + err);
}
assertTrue("TestH5._openH5file: H5.H5Dopen: ", H5did >= 0);
try {
H5dsid = H5.H5Dget_space(H5did);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5._openH5file: " + err);
}
assertTrue("TestH5._openH5file: H5.H5Screate_simple: ",H5dsid > 0);
}
public final void _deleteH5file() {
_closeH5File();
_deleteFile(H5_FILE);
}
@After
public void closeH5File() throws HDF5LibraryException {
_closeH5File();
System.out.println();
}
@Before
public void verifyCount()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
}
/**
* Test method for {@link hdf.hdf5lib.H5#J2C(int)}.
* NOTE:
@@ -411,4 +453,84 @@ public class TestH5 {
}
_deleteH5file();
}
@Test
public void testH5export_regdataset() {
int[] dset_data_expect = {66, 69, 72, 75, 78, 81, 96, 99, 102, 105, 108,
111, 126, 129, 132, 135, 138, 141, 156, 159, 162, 165, 168, 171,
186, 189, 192, 195, 198, 201, 216, 219, 222, 225, 228, 231,
207, 66, 252, 48, 84, 96, 12, 14, 213, 99};
int[] dset_indata = new int[DIM_BLKS+DIM_PNTS];
String objName = "/Dataset1";
_openH5File(H5_DREG_FILE, objName);
try {
H5.H5export_dataset(EXPORT_DREG_FILE, H5_DREG_FILE, objName, 99);
}
catch (HDF5LibraryException err) {
err.printStackTrace();
fail("H5export_dataset failed: " + err);
}
File file = new File(EXPORT_DREG_FILE);
try {
Reader reader = new FileReader(EXPORT_DREG_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
int indx = 0;
while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
}
reader.close();
}
catch (IOException err) {
err.printStackTrace();
fail("read file failed: " + err);
}
for(int row = 0; row < DIM_X; row++)
assertTrue("H5export_dataset: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
}
@Test
public void testH5export_attrdataset() {
int[] dset_data_expect = {0, 3, 6, 9, 1, 4, 7, 10, 2, 5, 8, 11};
int[] dset_indata = new int[DIM_ATTR];
String objName = "/Dataset3";
_openH5File(H5_AREG_FILE, objName);
try {
H5.H5export_dataset(EXPORT_AREG_FILE, H5_AREG_FILE, objName, 99);
}
catch (HDF5LibraryException err) {
err.printStackTrace();
fail("H5export_dataset failed: " + err);
}
File file = new File(EXPORT_AREG_FILE);
try {
Reader reader = new FileReader(EXPORT_AREG_FILE);
StreamTokenizer streamTokenizer = new StreamTokenizer(reader);
int indx = 0;
int jndx = 0;
while(streamTokenizer.nextToken() != StreamTokenizer.TT_EOF){
if(streamTokenizer.ttype == StreamTokenizer.TT_NUMBER) {
dset_indata[indx] = (int)streamTokenizer.nval;
indx++;
}
}
reader.close();
}
catch (IOException err) {
err.printStackTrace();
fail("read file failed: " + err);
}
for(int row = 0; row < DIM_X; row++)
assertTrue("H5export_dataset: <"+row+">"+dset_indata[row], dset_indata[row]==dset_data_expect[row]);
}
}
java/test/TestH5A.java
+57 -57
View File
@@ -43,14 +43,14 @@ public class TestH5A {
private static final String H5_FILE = "testA.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
long type_id = -1;
long space_id = -1;
long lapl_id = -1;
long aapl_id = -1;
long type_id = HDF5Constants.H5I_INVALID_HID;
long space_id = HDF5Constants.H5I_INVALID_HID;
long lapl_id = HDF5Constants.H5I_INVALID_HID;
long aapl_id = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -61,7 +61,7 @@ public class TestH5A {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
@@ -132,7 +132,7 @@ public class TestH5A {
@Test
public void testH5Acreate2() {
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Acreate2", attr_id >= 0);
@@ -160,8 +160,8 @@ public class TestH5A {
@Test
public void testH5Aopen() {
String attr_name = "dset";
long attribute_id = -1;
long attr_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long attr_id = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, attr_name, type_id, space_id,
@@ -197,8 +197,8 @@ public class TestH5A {
int idx_type = HDF5Constants.H5_INDEX_CRT_ORDER;
int order = HDF5Constants.H5_ITER_INC;
long n = 0;
long attr_id = -1;
long attribute_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, "file", type_id, space_id,
@@ -256,7 +256,7 @@ public class TestH5A {
public void testH5Acreate_by_name() {
String obj_name = ".";
String attr_name = "DATASET";
long attribute_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
boolean bool_val = false;
try {
@@ -288,7 +288,7 @@ public class TestH5A {
long loc_id = H5fid;
String old_attr_name = "old";
String new_attr_name = "new";
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
int ret_val = -1;
boolean bool_val = false;
@@ -326,7 +326,7 @@ public class TestH5A {
String obj_name = ".";
String old_attr_name = "old";
String new_attr_name = "new";
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
int ret_val = -1;
boolean bool_val = false;
@@ -368,7 +368,7 @@ public class TestH5A {
String obj_name = ".";
String attr_name = "DATASET1";
String ret_name = null;
long attribute_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
@@ -398,8 +398,8 @@ public class TestH5A {
int idx_type = HDF5Constants.H5_INDEX_NAME;
int order = HDF5Constants.H5_ITER_INC;
int n = 0;
long attr1_id = -1;
long attr2_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
try {
attr1_id = H5.H5Acreate_by_name(loc_id, obj_name, attr_name,
@@ -435,8 +435,8 @@ public class TestH5A {
@Test
public void testH5Aget_storage_size() {
long attr_id = -1;
long attr_size = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long attr_size = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id,
@@ -458,8 +458,8 @@ public class TestH5A {
@Test
public void testH5Aget_info() {
H5A_info_t attr_info = null;
long attribute_id = -1;
long attr_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long attr_id = HDF5Constants.H5I_INVALID_HID;
try {
attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id,
@@ -490,8 +490,8 @@ public class TestH5A {
@Test
public void testH5Aget_info1() {
H5A_info_t attr_info = null;
long attribute_id = -1;
long attr_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long attr_id = HDF5Constants.H5I_INVALID_HID;
int order = HDF5Constants.H5_ITER_INC;
try {
@@ -526,8 +526,8 @@ public class TestH5A {
@Test
public void testH5Aget_info_by_idx() {
long attr_id = -1;
long attr2_id = -1;;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;;
H5A_info_t attr_info = null;
try {
@@ -582,7 +582,7 @@ public class TestH5A {
@Test
public void testH5Aget_info_by_name() {
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
H5A_info_t attr_info = null;
String obj_name = ".";
String attr_name = "DATASET";
@@ -607,7 +607,7 @@ public class TestH5A {
@Test
public void testH5Adelete_by_name() {
long attr_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
int ret_val = -1;
boolean bool_val = false;
boolean exists = false;
@@ -650,8 +650,8 @@ public class TestH5A {
@Test
public void testH5Aexists() {
boolean exists = false;
long attr_id = -1;
long attribute_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
exists = H5.H5Aexists(H5fid, "None");
@@ -689,10 +689,10 @@ public class TestH5A {
@Test
public void testH5Adelete_by_idx_order() {
boolean exists = false;
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr4_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
long attr4_id = HDF5Constants.H5I_INVALID_HID;
try {
attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
@@ -731,9 +731,9 @@ public class TestH5A {
@Test
public void testH5Adelete_by_idx_name1() {
boolean exists = false;
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
try {
attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
@@ -766,10 +766,10 @@ public class TestH5A {
@Test
public void testH5Adelete_by_idx_name2() {
boolean exists = false;
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr4_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
long attr4_id = HDF5Constants.H5I_INVALID_HID;
try {
attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1",
@@ -821,8 +821,8 @@ public class TestH5A {
public void testH5Aopen_by_name() {
String obj_name = ".";
String attr_name = "DATASET";
long attribute_id = -1;
long aid = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
long aid = HDF5Constants.H5I_INVALID_HID;
try {
attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name,
@@ -856,9 +856,9 @@ public class TestH5A {
@Test
public void testH5Awrite_readVL() {
String attr_name = "VLdata";
long attr_id = -1;
long atype_id = -1;
long aspace_id = -1;
long attr_id = HDF5Constants.H5I_INVALID_HID;
long atype_id = HDF5Constants.H5I_INVALID_HID;
long aspace_id = HDF5Constants.H5I_INVALID_HID;
String[] str_data = { "Parting", "is such", "sweet", "sorrow." };
long[] dims = { str_data.length };
long lsize = 1;
@@ -923,8 +923,8 @@ public class TestH5A {
public void testH5Aget_create_plist() {
String attr_name = "DATASET1";
int char_encoding = 0;
long plist_id = -1;
long attribute_id = -1;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
plist_id = H5.H5Pcreate(HDF5Constants.H5P_ATTRIBUTE_CREATE);
@@ -984,10 +984,10 @@ public class TestH5A {
@Test
public void testH5Aiterate() {
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr4_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
long attr4_id = HDF5Constants.H5I_INVALID_HID;
class idata {
public String attr_name = null;
@@ -1052,10 +1052,10 @@ public class TestH5A {
@Test
public void testH5Aiterate_by_name() {
long attr1_id = -1;
long attr2_id = -1;
long attr3_id = -1;
long attr4_id = -1;
long attr1_id = HDF5Constants.H5I_INVALID_HID;
long attr2_id = HDF5Constants.H5I_INVALID_HID;
long attr3_id = HDF5Constants.H5I_INVALID_HID;
long attr4_id = HDF5Constants.H5I_INVALID_HID;
class idata {
public String attr_name = null;
java/test/TestH5D.java
+20 -20
View File
@@ -39,13 +39,13 @@ public class TestH5D {
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
private static final int RANK = 2;
long H5fid = -1;
long H5faplid = -1;
long H5dsid = -1;
long H5dtid = -1;
long H5did = -1;
long H5did0 = -1;
long H5dcpl_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5faplid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5dtid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5did0 = HDF5Constants.H5I_INVALID_HID;
long H5dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
// Values for the status of space allocation
@@ -195,9 +195,9 @@ public class TestH5D {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
}
private final void _openH5file(String name, long dapl) {
private final void _openH5file(String filename, String dsetname, long dapl) {
try {
H5fid = H5.H5Fopen(H5_FILE,
H5fid = H5.H5Fopen(filename,
HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
@@ -206,7 +206,7 @@ public class TestH5D {
}
assertTrue("TestH5D._openH5file: H5.H5Fopen: ",H5fid >= 0);
try {
H5did = H5.H5Dopen(H5fid, name, dapl);
H5did = H5.H5Dopen(H5fid, dsetname, dapl);
}
catch (Throwable err) {
err.printStackTrace();
@@ -268,7 +268,7 @@ public class TestH5D {
@Test
public void testH5Dcreate() {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
dataset_id = H5.H5Dcreate(H5fid, "dset",
HDF5Constants.H5T_STD_I32BE, H5dsid,
@@ -292,7 +292,7 @@ public class TestH5D {
@Test
public void testH5Dcreate_anon() {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
dataset_id = H5.H5Dcreate_anon(H5fid, HDF5Constants.H5T_STD_I32BE,
H5dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -315,12 +315,12 @@ public class TestH5D {
@Test
public void testH5Dopen() {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
H5.H5Dclose(H5did);
H5did = -1;
H5did = HDF5Constants.H5I_INVALID_HID;
dataset_id = H5.H5Dopen(H5fid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Exception err) {
@@ -388,8 +388,8 @@ public class TestH5D {
@Test
public void testH5Dget_access_plist() {
long dapl_id = -1;
long test_dapl_id = -1;
long dapl_id = HDF5Constants.H5I_INVALID_HID;
long test_dapl_id = HDF5Constants.H5I_INVALID_HID;
int[] mdc_nelmts1 = {0};
int[] mdc_nelmts2 = {0};
long[] rdcc_nelmts1 = {0};
@@ -500,7 +500,7 @@ public class TestH5D {
@Test(expected = HDF5LibraryException.class)
public void testH5Dget_space_closed() throws Throwable {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
dataset_id = H5.H5Dcreate(H5fid, "dset",
HDF5Constants.H5T_STD_I32BE, H5dsid,
@@ -518,7 +518,7 @@ public class TestH5D {
@Test
public void testH5Dget_space() {
long dataspace_id = -1;
long dataspace_id = HDF5Constants.H5I_INVALID_HID;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
@@ -542,7 +542,7 @@ public class TestH5D {
@Test(expected = HDF5LibraryException.class)
public void testH5Dget_type_closed() throws Throwable {
long dataset_id = -1;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
try {
dataset_id = H5.H5Dcreate(H5fid, "dset",
HDF5Constants.H5T_STD_I32BE, H5dsid,
@@ -560,7 +560,7 @@ public class TestH5D {
@Test
public void testH5Dget_type() {
long datatype_id = -1;
long datatype_id = HDF5Constants.H5I_INVALID_HID;
_createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
try {
java/test/TestH5Dplist.java
+4 -4
View File
@@ -42,10 +42,10 @@ public class TestH5Dplist {
private static final int NDIMS = 2;
private static final int FILLVAL = 99;
private static final int RANK = 2;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5dcpl_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5dcpl_id = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
long[] H5extdims = { EDIM_X, EDIM_Y };
long[] H5chunk_dims = { CHUNK_X, CHUNK_Y };
java/test/TestH5F.java
+9 -9
View File
@@ -49,7 +49,7 @@ public class TestH5F {
HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP,
HDF5Constants.H5F_OBJ_DATATYPE, HDF5Constants.H5F_OBJ_ATTR,
HDF5Constants.H5F_OBJ_ALL };
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -74,7 +74,7 @@ public class TestH5F {
public void deleteH5file() throws HDF5LibraryException {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
}
_deleteFile(H5_FILE);
System.out.println();
@@ -82,7 +82,7 @@ public class TestH5F {
@Test
public void testH5Fget_create_plist() {
long plist = -1;
long plist = HDF5Constants.H5I_INVALID_HID;
try {
plist = H5.H5Fget_create_plist(H5fid);
@@ -106,7 +106,7 @@ public class TestH5F {
@Test
public void testH5Fget_access_plist() {
long plist = -1;
long plist = HDF5Constants.H5I_INVALID_HID;
try {
plist = H5.H5Fget_access_plist(H5fid);
@@ -134,7 +134,7 @@ public class TestH5F {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
}
try {
@@ -159,7 +159,7 @@ public class TestH5F {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
}
try {
@@ -182,8 +182,8 @@ public class TestH5F {
public void testH5Fget_fileno_same() {
long fileno1 = 0;
long fileno2 = 0;
long fid1 = -1;
long fid2 = -1;
long fid1 = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid1 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC,
@@ -213,7 +213,7 @@ public class TestH5F {
public void testH5Fget_fileno_diff() {
long fileno1 = 0;
long fileno2 = 0;
long fid2 = -1;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid2 = H5.H5Fcreate(H5_FILE2, HDF5Constants.H5F_ACC_TRUNC,
java/test/TestH5Fbasic.java
+8 -8
View File
@@ -35,7 +35,7 @@ public class TestH5Fbasic {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testFb.h5";
private static final String TXT_FILE = "testFb.txt";
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -90,7 +90,7 @@ public class TestH5Fbasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Fopen_read_only() throws Throwable {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
@@ -125,8 +125,8 @@ public class TestH5Fbasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Freopen_closed() throws Throwable {
long fid = -1;
long fid2 = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
@@ -148,8 +148,8 @@ public class TestH5Fbasic {
@Test
public void testH5Freopen() {
long fid = -1;
long fid2 = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
long fid2 = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
@@ -182,7 +182,7 @@ public class TestH5Fbasic {
@Test
public void testH5Fclose() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
@@ -202,7 +202,7 @@ public class TestH5Fbasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Fclose_twice() throws Throwable {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
java/test/TestH5Fparams.java
+6 -6
View File
@@ -105,7 +105,7 @@ public class TestH5Fparams {
@Test
public void testH5Fcreate() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
File file = null;
try {
@@ -132,7 +132,7 @@ public class TestH5Fparams {
@Test
public void testH5Fflush_global() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
@@ -158,7 +158,7 @@ public class TestH5Fparams {
@Test
public void testH5Fflush_local() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
fid = H5.H5Fcreate("test.h5", HDF5Constants.H5F_ACC_TRUNC,
@@ -184,7 +184,7 @@ public class TestH5Fparams {
@Test
public void testH5Fget_info() {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
try {
@@ -215,7 +215,7 @@ public class TestH5Fparams {
@Ignore//(expected = HDF5FunctionArgumentException.class)
public void testH5Fset_libver_bounds_invalidlow() throws Throwable {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
try {
@@ -234,7 +234,7 @@ public class TestH5Fparams {
@Ignore//(expected = HDF5FunctionArgumentException.class)
public void testH5Fset_libver_bounds_invalidhigh() throws Throwable {
long fid = -1;
long fid = HDF5Constants.H5I_INVALID_HID;
try {
try {
java/test/TestH5Fswmr.java
+6 -6
View File
@@ -33,9 +33,9 @@ public class TestH5Fswmr {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testswmr.h5";
long H5fid = -1;
long H5fapl = -1;
long H5fcpl = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5fapl = HDF5Constants.H5I_INVALID_HID;
long H5fcpl = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -63,15 +63,15 @@ public class TestH5Fswmr {
public void deleteH5file() throws HDF5LibraryException {
if (H5fapl > 0) {
try {H5.H5Pclose(H5fapl);} catch (Exception ex) {}
H5fapl = -1;
H5fapl = HDF5Constants.H5I_INVALID_HID;
}
if (H5fcpl > 0) {
try {H5.H5Pclose(H5fcpl);} catch (Exception ex) {}
H5fcpl = -1;
H5fcpl = HDF5Constants.H5I_INVALID_HID;
}
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = -1;
H5fid = HDF5Constants.H5I_INVALID_HID;
}
_deleteFile(H5_FILE);
System.out.println();
java/test/TestH5G.java
+11 -11
View File
@@ -39,11 +39,11 @@ public class TestH5G {
private static final String[] GROUPS = { "/G1", "/G1/G11", "/G1/G12",
"/G1/G11/G111", "/G1/G11/G112", "/G1/G11/G113", "/G1/G11/G114" };
private static final String[] GROUPS2 = { "/G1", "/G1/G14", "/G1/G12", "/G1/G13", "/G1/G11"};
long H5fid = -1;
long H5fid2 = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5fid2 = HDF5Constants.H5I_INVALID_HID;
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -58,8 +58,8 @@ public class TestH5G {
}
private final long _createGroup2(long fid, String name) {
long gid = -1;
long gcpl = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
long gcpl = HDF5Constants.H5I_INVALID_HID;
try {
gcpl = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE); //create gcpl
}
@@ -92,12 +92,12 @@ public class TestH5G {
}
private final long _openGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
gid = -1;
gid = HDF5Constants.H5I_INVALID_HID;
err.printStackTrace();
fail("H5.H5Gopen: " + err);
}
@@ -134,7 +134,7 @@ public class TestH5G {
assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid > 0);
assertTrue("TestH5G.createH5file: H5.H5Fcreate: ", H5fid2 > 0);
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
gid = _createGroup(H5fid, GROUPS[i]);
@@ -165,7 +165,7 @@ public class TestH5G {
@Test
public void testH5Gopen() {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
try {
gid = H5.H5Gopen(H5fid, GROUPS[i], HDF5Constants.H5P_DEFAULT);
@@ -185,8 +185,8 @@ public class TestH5G {
@Test
public void testH5Gget_create_plist() {
long gid = -1;
long pid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
long pid = HDF5Constants.H5I_INVALID_HID;
for (int i = 0; i < GROUPS.length; i++) {
try {
java/test/TestH5Gbasic.java
+8 -8
View File
@@ -33,10 +33,10 @@ import org.junit.rules.TestName;
public class TestH5Gbasic {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testGb.h5";
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -85,7 +85,7 @@ public class TestH5Gbasic {
@Test(expected = NullPointerException.class)
public void testH5Gcreate_null() throws Throwable {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
// it should fail because the group name is null
gid = H5.H5Gcreate(H5fid, null, HDF5Constants.H5P_DEFAULT,
@@ -102,7 +102,7 @@ public class TestH5Gbasic {
@Test
public void testH5Gcreate() {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(H5fid, "/testH5Gcreate",
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
@@ -145,7 +145,7 @@ public class TestH5Gbasic {
@Test
public void testH5Gcreate_anon() {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate_anon(H5fid, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
@@ -161,7 +161,7 @@ public class TestH5Gbasic {
@Test(expected = NullPointerException.class)
public void testH5Gopen_null() throws Throwable {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
gid = H5.H5Gopen(H5fid, null, HDF5Constants.H5P_DEFAULT);
@@ -175,7 +175,7 @@ public class TestH5Gbasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Gopen_not_exists() throws Throwable {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
gid = H5.H5Gopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT);
@@ -209,7 +209,7 @@ public class TestH5Gbasic {
@Test
public void testH5Gget_create_plist() {
long pid = -1;
long pid = HDF5Constants.H5I_INVALID_HID;
long gid = _createGroup(H5fid, "/testH5Gcreate");
assertTrue(gid > 0);
java/test/TestH5Giterate.java
+3 -3
View File
@@ -31,15 +31,15 @@ import org.junit.rules.TestName;
public class TestH5Giterate {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "h5ex_g_iterate.hdf";
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final long _openGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
gid = -1;
gid = HDF5Constants.H5I_INVALID_HID;
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
java/test/TestH5Lbasic.java
+1 -1
View File
@@ -35,7 +35,7 @@ import org.junit.rules.TestName;
public class TestH5Lbasic {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "h5ex_g_iterateL1.hdf";
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
@Before
public void openH5file()
java/test/TestH5Lcreate.java
+9 -9
View File
@@ -41,13 +41,13 @@ public class TestH5Lcreate {
private static final String H5_FILE = "testL.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fcpl = -1;
long H5fid = -1;
long H5dsid = -1;
long H5did1 = -1;
long H5did2 = -1;
long H5gcpl = -1;
long H5gid = -1;
long H5fcpl = HDF5Constants.H5I_INVALID_HID;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did1 = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long H5gcpl = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
private final void _deleteFile(String filename) {
@@ -64,7 +64,7 @@ public class TestH5Lcreate {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
@@ -80,7 +80,7 @@ public class TestH5Lcreate {
}
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
java/test/TestH5Obasic.java
+17 -17
View File
@@ -41,7 +41,7 @@ public class TestH5Obasic {
private static final String H5_FILE = "h5ex_g_iterateO1.hdf";
private static H5O_token_t H5la_ds1 = null;
private static H5O_token_t H5la_l1 = null;
long H5fid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
@Before
public void openH5file()
@@ -69,7 +69,7 @@ public class TestH5Obasic {
@Test(expected = HDF5LibraryException.class)
public void testH5Oopen_not_exists() throws Throwable {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
oid = H5.H5Oopen(H5fid, "Never_created", HDF5Constants.H5P_DEFAULT);
@@ -78,7 +78,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_dataset() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
@@ -96,7 +96,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_hardlink() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
@@ -113,7 +113,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_group() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "G1", HDF5Constants.H5P_DEFAULT);
@@ -130,7 +130,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_datatype() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "DT1", HDF5Constants.H5P_DEFAULT);
@@ -234,7 +234,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_by_idx_n0() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -260,7 +260,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_info_by_idx_n3() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
oid = H5.H5Oopen(H5fid, "L1", HDF5Constants.H5P_DEFAULT);
@@ -286,7 +286,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_dataset() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -306,7 +306,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_hardlink() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -326,7 +326,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_group() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -346,7 +346,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_datatype() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
try {
@@ -464,7 +464,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_idx_n0() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
H5O_hdr_info_t ohdr;
H5_ih_info_t oinfo;
@@ -503,7 +503,7 @@ public class TestH5Obasic {
@Test
public void testH5Oget_native_info_by_idx_n3() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_native_info_t native_info = null;
H5O_hdr_info_t ohdr;
H5_ih_info_t oinfo;
@@ -630,7 +630,7 @@ public class TestH5Obasic {
@Test
public void testH5Oopen_by_token() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
@@ -668,7 +668,7 @@ public class TestH5Obasic {
@Test
public void testH5Oopen_by_idx_n0() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
@@ -706,7 +706,7 @@ public class TestH5Obasic {
@Test
public void testH5Oopen_by_idx_n3() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
java/test/TestH5Ocopy.java
+20 -20
View File
@@ -36,13 +36,13 @@ public class TestH5Ocopy {
private static final String FILENAME = "testRefsattribute.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fid = -1;
long H5dsid = -1;
long H5did1 = -1;
long H5did2 = -1;
long H5gcpl = -1;
long H5gid = -1;
long H5dsid2 = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did1 = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long H5gcpl = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long H5dsid2 = HDF5Constants.H5I_INVALID_HID;
long[] dims = { 2 };
private final void _deleteFile(String filename) {
@@ -59,7 +59,7 @@ public class TestH5Ocopy {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
@@ -75,7 +75,7 @@ public class TestH5Ocopy {
}
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
@@ -136,10 +136,10 @@ public class TestH5Ocopy {
@Test
public void testH5OcopyRefsAttr() {
long ocp_plist_id = -1;
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
byte rbuf0[]=null , rbuf1[] = null;
byte[] dset_data = new byte[16];
long attribute_id = -1;
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
@@ -184,9 +184,9 @@ public class TestH5Ocopy {
public void testH5OcopyRefsDatasettodiffFile() {
byte rbuf1[] = null;
byte[] dset_data = new byte[16];
long ocp_plist_id = -1;
long dataset_id = -1;
long H5fid2 = -1;
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long H5fid2 = HDF5Constants.H5I_INVALID_HID;
try {
rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1);
@@ -244,9 +244,9 @@ public class TestH5Ocopy {
public void testH5OcopyRefsDatasettosameFile() {
byte rbuf0[]=null , rbuf1[] = null;
byte[] dset_data = new byte[16];
long ocp_plist_id = -1;
long dataset_id = -1;
long did = -1;
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long did = HDF5Constants.H5I_INVALID_HID;
int obj_type = -1;
byte[] read_data = new byte[16];
@@ -328,9 +328,9 @@ public class TestH5Ocopy {
// @Test(expected = HDF5LibraryException.class)
// public void testH5OcopyInvalidRef() throws Throwable {
// final long _pid_ = HDF5Constants.H5P_DEFAULT;
// long sid = -1;
// long did = -1;
// long aid = -1;
// long sid = HDF5Constants.H5I_INVALID_HID;
// long did = HDF5Constants.H5I_INVALID_HID;
// long aid = HDF5Constants.H5I_INVALID_HID;
//
// try {
// sid = H5.H5Screate_simple(1, new long[] {1}, null);
java/test/TestH5Ocreate.java
+13 -13
View File
@@ -41,13 +41,13 @@ public class TestH5Ocreate {
private static final String H5_FILE = "testO.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fcpl = -1;
long H5fid = -1;
long H5dsid = -1;
long H5did1 = -1;
long H5did2 = -1;
long H5gcpl = -1;
long H5gid = -1;
long H5fcpl = HDF5Constants.H5I_INVALID_HID;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did1 = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long H5gcpl = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
private final void _deleteFile(String filename) {
@@ -64,7 +64,7 @@ public class TestH5Ocreate {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
@@ -80,7 +80,7 @@ public class TestH5Ocreate {
}
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
H5gcpl = HDF5Constants.H5P_DEFAULT;
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
@@ -293,7 +293,7 @@ public class TestH5Ocreate {
@Test
public void testH5Olink() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
H5O_info_t dst_obj_info = null;
try {
@@ -380,7 +380,7 @@ public class TestH5Ocreate {
@Test
public void testH5Ocomment() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
String obj_comment = null;
try {
oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -405,7 +405,7 @@ public class TestH5Ocreate {
@Test
public void testH5Ocomment_clear() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
String obj_comment = null;
try {
oid = H5.H5Oopen(H5fid, "DS1", HDF5Constants.H5P_DEFAULT);
@@ -506,7 +506,7 @@ public class TestH5Ocreate {
@Test
public void testH5Oinc_dec_count() {
long oid = -1;
long oid = HDF5Constants.H5I_INVALID_HID;
H5O_info_t obj_info = null;
try {
try {
java/test/TestH5P.java
+15 -15
View File
@@ -41,20 +41,20 @@ public class TestH5P {
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long[] H5dims = { DIM_X, DIM_Y };
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long lapl_id = -1;
long fapl_id = -1;
long fcpl_id = -1;
long ocpl_id = -1;
long ocp_plist_id = -1;
long lcpl_id = -1;
long plapl_id = -1;
long plist_id = -1;
long gapl_id = -1;
long gcpl_id = -1;
long acpl_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long lapl_id = HDF5Constants.H5I_INVALID_HID;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long fcpl_id = HDF5Constants.H5I_INVALID_HID;
long ocpl_id = HDF5Constants.H5I_INVALID_HID;
long ocp_plist_id = HDF5Constants.H5I_INVALID_HID;
long lcpl_id = HDF5Constants.H5I_INVALID_HID;
long plapl_id = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long gapl_id = HDF5Constants.H5I_INVALID_HID;
long gcpl_id = HDF5Constants.H5I_INVALID_HID;
long acpl_id = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -65,7 +65,7 @@ public class TestH5P {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
java/test/TestH5PData.java
+5 -5
View File
@@ -37,10 +37,10 @@ public class TestH5PData {
private static final String H5_FILE = "testPD.h5";
private static final int DIM_X = 12;
private static final int DIM_Y = 18;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long plist_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
double windchillF[][] =
{{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0},
@@ -66,7 +66,7 @@ public class TestH5PData {
}
private final long _createFloatDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
java/test/TestH5PL.java
+5 -5
View File
@@ -147,11 +147,11 @@ public class TestH5PL {
@Ignore
public void TestH5PLdlopen() {
long file_id = -1;
long filespace_id = -1;
long dataset_id = -1;
long fapl_id = -1;
long dcpl_id = -1;
long file_id = HDF5Constants.H5I_INVALID_HID;
long filespace_id = HDF5Constants.H5I_INVALID_HID;
long dataset_id = HDF5Constants.H5I_INVALID_HID;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long dcpl_id = HDF5Constants.H5I_INVALID_HID;
try {
int[] cd_values = {9, 0, 0, 0};
int[] libversion = {0, 0, 0};
java/test/TestH5Pfapl.java
+14 -14
View File
@@ -47,17 +47,17 @@ public class TestH5Pfapl {
private static final int DIM_Y = 6;
private static final int DIMF_X = 12;
private static final int DIMF_Y = 18;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5Fdsid = -1;
long H5Fdid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5Fdsid = HDF5Constants.H5I_INVALID_HID;
long H5Fdid = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
long fapl_id = -1;
long plapl_id = -1;
long dapl_id = -1;
long plist_id = -1;
long btplist_id = -1;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long plapl_id = HDF5Constants.H5I_INVALID_HID;
long dapl_id = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long btplist_id = HDF5Constants.H5I_INVALID_HID;
long[] H5Fdims = { DIMF_X, DIMF_Y };
double windchillF[][] =
{{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0},
@@ -130,7 +130,7 @@ public class TestH5Pfapl {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
@@ -385,7 +385,7 @@ public class TestH5Pfapl {
@Test
public void testH5Pget_elink_fapl() {
long ret_val_id = -1;
long ret_val_id = HDF5Constants.H5I_INVALID_HID;
try {
ret_val_id = H5.H5Pget_elink_fapl(plapl_id);
assertTrue("H5Pget_elink_fapl", ret_val_id >= 0);
@@ -403,7 +403,7 @@ public class TestH5Pfapl {
@Test
public void testH5P_elink_fapl() {
long ret_val_id = -1;
long ret_val_id = HDF5Constants.H5I_INVALID_HID;
try {
H5.H5Pset_elink_fapl(plapl_id, fapl_id );
ret_val_id = H5.H5Pget_elink_fapl(plapl_id);
@@ -421,7 +421,7 @@ public class TestH5Pfapl {
@Test
public void testH5P_elink_file_cache_size() {
long elink_fapl_id = -1;
long elink_fapl_id = HDF5Constants.H5I_INVALID_HID;
int efc_size = 0;
try {
H5.H5Pset_elink_fapl(plapl_id, fapl_id );
java/test/TestH5Pfaplhdfs.java
+5 -5
View File
@@ -34,11 +34,11 @@ import org.junit.rules.TestName;
public class TestH5Pfaplhdfs {
@Rule public TestName testname = new TestName();
long fapl_id = -1;
long plapl_id = -1;
long dapl_id = -1;
long plist_id = -1;
long btplist_id = -1;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long plapl_id = HDF5Constants.H5I_INVALID_HID;
long dapl_id = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long btplist_id = HDF5Constants.H5I_INVALID_HID;
@Before
public void createFileAccess() throws NullPointerException, HDF5Exception
java/test/TestH5Pfapls3.java
+5 -5
View File
@@ -34,11 +34,11 @@ import org.junit.rules.TestName;
public class TestH5Pfapls3 {
@Rule public TestName testname = new TestName();
long fapl_id = -1;
long plapl_id = -1;
long dapl_id = -1;
long plist_id = -1;
long btplist_id = -1;
long fapl_id = HDF5Constants.H5I_INVALID_HID;
long plapl_id = HDF5Constants.H5I_INVALID_HID;
long dapl_id = HDF5Constants.H5I_INVALID_HID;
long plist_id = HDF5Constants.H5I_INVALID_HID;
long btplist_id = HDF5Constants.H5I_INVALID_HID;
@Before
public void createFileAccess() throws NullPointerException, HDF5Exception
java/test/TestH5Plist.java
+16 -16
View File
@@ -85,7 +85,7 @@ public class TestH5Plist {
PROP3_NAME,
PROP4_NAME};
long plist_class_id = -1;
long plist_class_id = HDF5Constants.H5I_INVALID_HID;
@Before
public void createPropClass()throws NullPointerException, HDF5Exception
@@ -114,9 +114,9 @@ public class TestH5Plist {
@Test
public void testH5P_genprop_basic_class() {
int status = -1;
long cid1 = -1; // Generic Property class ID
long cid2 = -1; // Generic Property class ID
long cid3 = -1; // Generic Property class ID
long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
long cid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
String name = null; // Name of class
try {
@@ -162,7 +162,7 @@ public class TestH5Plist {
// Close parent class
try {
H5.H5Pclose_class(cid2);
cid2 = -1;
cid2 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -172,7 +172,7 @@ public class TestH5Plist {
// Close class
try {
H5.H5Pclose_class(plist_class_id);
plist_class_id = -1;
plist_class_id = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -242,7 +242,7 @@ public class TestH5Plist {
// Close parent class's parent
try {
H5.H5Pclose_class(cid3);
cid3 = -1;
cid3 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -252,7 +252,7 @@ public class TestH5Plist {
// Close parent class's parent
try {
H5.H5Pclose_class(cid2);
cid2 = -1;
cid2 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -262,7 +262,7 @@ public class TestH5Plist {
// Close parent class's parent
try {
H5.H5Pclose_class(cid1);
cid1 = -1;
cid1 = HDF5Constants.H5I_INVALID_HID;
}
catch (Throwable err) {
err.printStackTrace();
@@ -634,7 +634,7 @@ public class TestH5Plist {
@Test
public void testH5P_genprop_basic_list_prop() {
boolean status = false;
long lid1 = -1; // Generic Property list ID
long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
long nprops = -1; // Number of properties in class
try {
@@ -760,7 +760,7 @@ public class TestH5Plist {
// @Test
// public void testH5P_genprop_class_callback() {
// class cdata {
// public long cls_id = -1;
// public long cls_id = HDF5Constants.H5I_INVALID_HID;
// public int cls_count = -1;
// cdata(long id, int count) {
// this.cls_id = id;
@@ -813,11 +813,11 @@ public class TestH5Plist {
// }
// H5P_cls_close_func_cb cls_close_cb = new H5P_cls_close_callback();
//
// long cid1 = -1; // Generic Property class ID
// long cid2 = -1; // Generic Property class ID
// long lid1 = -1; // Generic Property list ID
// long lid2 = -1; // Generic Property list ID
// long lid3 = -1; // Generic Property list ID
// long cid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
// long cid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property class ID
// long lid1 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
// long lid2 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
// long lid3 = HDF5Constants.H5I_INVALID_HID; // Generic Property list ID
// long nprops = -1; // Number of properties in class
//
// try {
java/test/TestH5Pvirtual.java
+13 -13
View File
@@ -52,13 +52,13 @@ public class TestH5Pvirtual {
private static final int fill_value = -1;
long[] H5dims = { DIM_Y };
long[] VDSH5dims = { VDSDIM_X, VDSDIM_Y };
long H5fid = -1;
long H5dsid = -1;
long H5dssid = -1;
long H5dvsid = -1;
long H5did = -1;
long H5dcplid = -1;
long H5dapl_id = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5dssid = HDF5Constants.H5I_INVALID_HID;
long H5dvsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5dcplid = HDF5Constants.H5I_INVALID_HID;
long H5dapl_id = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
@@ -69,8 +69,8 @@ public class TestH5Pvirtual {
}
private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl) {
long did = -1;
long space_id = -1;
long did = HDF5Constants.H5I_INVALID_HID;
long space_id = HDF5Constants.H5I_INVALID_HID;
long[] start = {0, 0};
long[] stride = null;
long[] count = {1, 1};
@@ -100,9 +100,9 @@ public class TestH5Pvirtual {
int[] dset_data = new int[DIM_Y];
// Create source files and datasets
for (int i=0; i < 3; i++) {
long space_id = -1;
long dset_id = -1;
long file_id = -1;
long space_id = HDF5Constants.H5I_INVALID_HID;
long dset_id = HDF5Constants.H5I_INVALID_HID;
long file_id = HDF5Constants.H5I_INVALID_HID;
for (int j = 0; j < DIM_Y; j++) dset_data[j] = i+1;
try {
@@ -265,7 +265,7 @@ public class TestH5Pvirtual {
@Test
public void testH5Pget_selection_source_dataset() throws Throwable {
long src_space = -1;
long src_space = HDF5Constants.H5I_INVALID_HID;
long src_selection = -1;
H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id);
java/test/TestH5R.java
+7 -110
View File
@@ -39,11 +39,11 @@ public class TestH5R {
private static final String H5_FILE = "testH5R.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5gid = -1;
long H5did2 = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long H5gid = HDF5Constants.H5I_INVALID_HID;
long H5did2 = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
int FILLVAL = 99;
@@ -62,7 +62,7 @@ public class TestH5R {
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
@@ -78,7 +78,7 @@ public class TestH5R {
}
private final long _createGroup(long fid, String name) {
long gid = -1;
long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -150,109 +150,6 @@ public class TestH5R {
System.out.println();
}
// Test v1.8 APIs params
/*
* @Ignore public void testH5Rget_name() { long loc_id = H5fid; int ref_type =
* HDF5Constants.H5R_OBJECT; long ret_val = -1; byte[] ref = null; String[] name = {""}; String
* objName = "/dset";
*
* try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rget_name:H5Rcreate " + err); }
*
* try { ret_val = H5.H5Rget_name(loc_id, ref_type, ref, name, 16); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rget_name: " + err); }
*
* assertTrue("testH5Rget_name: H5Rget_name", ret_val>0); assertTrue("The name of the object: ",
* objName.equals(name[0])); }
*
* @Ignore public void testH5Rget_obj_type2() { int ref_type=HDF5Constants.H5R_OBJECT; byte[]
* ref=null;
*
* String objName = "/dset"; int obj_type = -1;
*
* try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch(Throwable err) {
* err.printStackTrace(); }
*
* try { obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, ref); } catch (Throwable
* err) { err.printStackTrace(); fail("H5.H5Rget_obj_type2: " + err); } assertEquals(obj_type,
* HDF5Constants.H5O_TYPE_DATASET); }
*
* @Ignore public void testH5Rcreate_refobj() { byte[] ref = null;
*
* try { ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); }
*
* @Ignore public void testH5Rcreate_regionrefobj() { byte[] ref = null; try { ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); }
*
* @Ignore public void testH5Rdereference() { byte[] ref1 = null; byte[] ref2 = null; long
* dataset_id = -1; long group_id = -1; try { //Create reference on dataset ref1 =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dataset_id=
* H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
*
* //Create reference on group ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
* group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
* assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0); assertTrue(group_id >= 0);
* } catch (Throwable err) { err.printStackTrace(); fail("TestH5Rdereference " + err); } finally {
* try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} try {H5.H5Gclose(group_id);} catch
* (Exception ex) {} } }
*
* @Ignore public void testH5Rget_region() { byte[] ref = null; long dsid = -1; try { ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dsid =
* H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); assertNotNull(ref);
* assertTrue(dsid >= 0); } catch (Throwable err) { err.printStackTrace();
* fail("TestH5Rget_region: " + err); } finally { try {H5.H5Sclose(dsid);} catch (Exception ex) {} }
* }
*
* @Ignore//(expected = IllegalArgumentException.class) public void testH5Rget_name_Invalidreftype()
* throws Throwable { byte[] ref = null; String[] name = {""}; ref = H5.H5Rcreate(H5fid, "/dset",
* HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_name(H5fid, HDF5Constants.H5R_DATASET_REGION, ref, name,
* 16); }
*
* @Ignore//(expected = NullPointerException.class) public void testH5Rget_name_NULLreference()
* throws Throwable { byte[] ref = null; String[] name = {""}; H5.H5Rget_name(H5fid,
* HDF5Constants.H5R_OBJECT, ref, name, 16); }
*
* @Ignore//(expected = HDF5LibraryException.class) public void
* testH5Rget_obj_type2_Invalidreftype() throws Throwable { byte[] ref = null; ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_obj_type(H5fid,
* HDF5Constants.H5R_DATASET_REGION, ref); }
*
* @Ignore//(expected = HDF5LibraryException.class) public void testH5Rcreate_InvalidObjectName()
* throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/GROUPS", HDF5Constants.H5R_OBJECT, -1); }
*
* @Ignore//(expected = HDF5LibraryException.class) public void testH5Rcreate_Invalidspace_id()
* throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, -1);
* }
*
* @Ignore//(expected = IllegalArgumentException.class) public void testH5Rcreate_Invalidreftype()
* throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_BADTYPE, -1); }
*
* @Ignore//(expected = IllegalArgumentException.class) public void
* testH5Rgetregion_Invalidreftype() throws Throwable { byte[] ref = null; ref = H5.H5Rcreate(H5fid,
* "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid,
* HDF5Constants.H5R_DATASET_REGION, ref); }
*
* @Ignore//(expected = IllegalArgumentException.class) public void
* testH5Rgetregion_Badreferencetype() throws Throwable { byte[] ref = null; ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid,
* HDF5Constants.H5R_OBJECT, ref); }
*
* @Ignore//(expected = NullPointerException.class) public void testH5Rgetregion_Nullreference()
* throws Throwable { byte[] ref = null; H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION,
* ref); }
*
* @Ignore//(expected = NullPointerException.class) public void testH5Rdereference_Nullreference()
* throws Throwable { byte[] ref = null; H5.H5Rdereference(H5did2, HDF5Constants.H5P_DEFAULT,
* HDF5Constants.H5R_OBJECT, ref); }
*
* @Ignore//(expected = IllegalArgumentException.class) public void
* testH5Rdereference_Invalidreference() throws Throwable { byte[] ref1 = null; byte[] ref2 = null;
* ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); ref2 =
* H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); H5.H5Rdereference(H5gid,
* HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref1); }
*/
// Test v1.12 APIs params
@Test
java/test/TestH5Rref.java
+561
View File
@@ -0,0 +1,561 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
import org.junit.After;
import org.junit.Before;
import org.junit.Ignore;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Rref {
@Rule public TestName testname = new TestName();
private static final String H5_DREG_FILE = "trefer_reg.h5";
private static final String H5_AREG_FILE = "trefer_attr.h5";
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
private boolean byteArrayCheck(final byte[] array) {
for (byte b : array) {
if (b != 0) {
return false;
}
}
return true;
}
public void openH5file(String filename, String dsetname) {
try {
H5fid = H5.H5Fopen(filename,
HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5R._openH5file: " + err);
}
assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0);
try {
H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5R._openH5file: " + err);
}
assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0);
try {
H5dsid = H5.H5Dget_space(H5did);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5R._openH5file: " + err);
}
assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ",H5dsid > 0);
}
@After
public void closeH5file() throws HDF5LibraryException {
if (H5did >= 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = HDF5Constants.H5I_INVALID_HID;
H5dsid = HDF5Constants.H5I_INVALID_HID;
H5did = HDF5Constants.H5I_INVALID_HID;
System.out.println();
}
@Before
public void verifyCount()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
}
// Test v1.12 APIs params
@Test
public void testH5Rget_object() {
int ref_type = HDF5Constants.H5R_OBJECT1;
long f_type = HDF5Constants.H5I_INVALID_HID;
int obj_type = -1;
int ndims = 1;
long ret_val = -1;
byte[][] refbuf = null;
String name = "";
String objName = "/DS_NA";
try {
openH5file(H5_DREG_FILE, objName);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: openH5file: " + err);
}
try {
f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_object: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE")==0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: " + err);
}
finally {
try {H5.H5Tclose(f_type);} catch (Exception ex) {}
}
try {
ndims = H5.H5Sget_simple_extent_ndims(H5dsid);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Sget_simple_extent_ndims: " + err);
}
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Rget_object: H5Dread: " + err);
}
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
assertTrue("testH5Rget_object: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
if (!byteArrayCheck(refbuf[i])) {
try {
obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT);
assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
}
catch (Throwable err2) {
err2.printStackTrace();
fail("testH5Rget_object: H5.H5Rget_obj_type3: " + err2);
}
}
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Rget_type: " + err);
}
finally {
H5.H5Rdestroy(refbuf[i]);
}
}
}
@Test
public void testH5Rget_obj_type3() {
long f_type = HDF5Constants.H5I_INVALID_HID;
int ref_type = HDF5Constants.H5R_DATASET_REGION2;
int obj_type = -1;
int ndims = 1;
long ret_val = -1;
byte[][] refbuf = null;
String objName = "/Dataset1";
try {
openH5file(H5_DREG_FILE, objName);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: openH5file: " + err);
}
try {
f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_obj_type3: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
assertTrue("testH5Rget_obj_type3: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: " + err);
}
finally {
try {H5.H5Tclose(f_type);} catch (Exception ex) {}
}
try {
ndims = H5.H5Sget_simple_extent_ndims(H5dsid);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5Sget_simple_extent_ndims: " + err);
}
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5Dread: " + err);
}
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
assertTrue("testH5Rget_obj_type3: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
if (!byteArrayCheck(refbuf[i])) {
try {
obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT);
assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
}
catch (Throwable err2) {
err2.printStackTrace();
fail("testH5Rget_obj_type3: H5.H5Rget_obj_type3: " + err2);
}
}
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5Rget_type: " + err);
}
finally {
H5.H5Rdestroy(refbuf[i]);
}
}
}
@Test
public void testH5Rget_region_dataset() {
long f_type = HDF5Constants.H5I_INVALID_HID;
long loc_id = HDF5Constants.H5I_INVALID_HID;
long loc_sid = HDF5Constants.H5I_INVALID_HID;
int ref_type = HDF5Constants.H5R_DATASET_REGION2;
int ndims = 1;
long ret_val = -1;
byte[][] refbuf = null;
String name = "";
String objName = "/Dataset1";
try {
openH5file(H5_DREG_FILE, objName);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_dataset: openH5file: " + err);
}
try {
f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
assertTrue("testH5Rget_region_dataset: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_dataset: " + err);
}
finally {
try {H5.H5Tclose(f_type);} catch (Exception ex) {}
}
try {
ndims = H5.H5Sget_simple_extent_ndims(H5dsid);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err);
}
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5Dread: " + err);
}
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
assertTrue("testH5Rget_region_dataset: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
try {
loc_id = H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue(loc_id >= 0);
boolean regionzero = byteArrayCheck(refbuf[i]);
if (i > 1)
assertTrue(regionzero);
else {
try {
loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue(loc_sid >= 0);
int region_type = -1;
try {
int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid);
region_type = H5.H5Sget_select_type(loc_sid);
if (i == 1)
assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS);
else
assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS);
if (region_type == HDF5Constants.H5S_SEL_POINTS) {
long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid);
// Coordinates for get point selection
long getcoord[] = new long[reg_ndims * (int)reg_npoints];
// Known coordinates for point selection
long coord[][] = {{6,9},{2,2},{8,4},{1,6},{2,8},{3,2},
{0,4},{9,0},{7,1},{3,3}};
try {
H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]);
assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]);
}
catch (Throwable err3) {
err3.printStackTrace();
fail("H5.H5Sget_select_elem_pointlist: " + err3);
}
}
else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) {
long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid);
assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1);
// Coordinates for get block selection
long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2];
long start[] = {2,2};
long block[] = {8,8};
try {
H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks);
assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]);
assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]);
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == getblocks[2]);
assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == getblocks[3]);
}
catch (Throwable err3) {
err3.printStackTrace();
fail("H5.H5Sget_select_hyper_blocklist: " + err3);
}
}
}
catch (Throwable err2) {
err2.printStackTrace();
fail("testH5Rget_region_dataset: H5Sget_select_type: " + err2);
}
}
catch (Throwable err1) {
err1.printStackTrace();
fail("testH5Rget_region_dataset: " + err1);
}
finally {
try {H5.H5Sclose(loc_sid);} catch (Exception ex) {}
}
}
}
catch (Throwable err0) {
err0.printStackTrace();
fail("testH5Rget_region_dataset: " + err0);
}
finally {
try {H5.H5Dclose(loc_id);} catch (Exception ex) {}
}
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_dataset: H5Rget_type: " + err);
}
finally {
H5.H5Rdestroy(refbuf[i]);
}
} //for (int i = 0; i < ndims; i++)
}
@Test
public void testH5Rget_region_attribute() {
long f_type = HDF5Constants.H5I_INVALID_HID;
long loc_id = HDF5Constants.H5I_INVALID_HID;
long loc_sid = HDF5Constants.H5I_INVALID_HID;
int ref_type = HDF5Constants.H5R_ATTR;
int obj_type = -1;
int ndims = 1;
long ret_val = -1;
byte[][] refbuf = null;
String objName = "/Dataset3";
try {
openH5file(H5_AREG_FILE, objName);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: openH5file: " + err);
}
try {
f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
assertTrue("testH5Rget_region_attribute: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: " + err);
}
finally {
try {H5.H5Tclose(f_type);} catch (Exception ex) {}
}
try {
ndims = H5.H5Sget_simple_extent_ndims(H5dsid);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err);
}
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: H5Dread: " + err);
}
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
assertTrue("testH5Rget_region_attribute: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
try {
loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
assertTrue(loc_id >= 0);
if (!byteArrayCheck(refbuf[i])) {
try {
loc_sid = H5.H5Aget_space(loc_id);
assertTrue(loc_sid >= 0);
}
catch (Throwable err1) {
err1.printStackTrace();
fail("testH5Rget_region_attribute: " + err1);
}
finally {
try {H5.H5Sclose(loc_sid);} catch (Exception ex) {}
}
}
}
catch (Throwable err0) {
err0.printStackTrace();
fail("testH5Rget_region_attribute: " + err0);
}
finally {
try {H5.H5Aclose(loc_id);} catch (Exception ex) {}
}
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_region_attribute: H5Rget_type: " + err);
}
finally {
H5.H5Rdestroy(refbuf[i]);
}
}
}
// These tests need to be updated with new APIs
// @Test//
// public void testH5Rget_group() {
// long loc_id = H5fid;
// int ref_type = HDF5Constants.H5R_OBJECT2;
// long ret_val = -1;
// byte[] ref = null;
// String name = "";
// String objName = "/dset";
//
// try {
// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("testH5Rget_object: H5Rcreate_object " + err);
// }
// try {
// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
//
// //Create reference on group
// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
// assertNotNull(ref1);
// assertNotNull(ref2);
// assertTrue(dataset_id >= 0);
// assertTrue(group_id >= 0);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("TestH5Rdereference " + err);
// }
// finally {
// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
// try {H5.H5Gclose(group_id);} catch (Exception ex) {}
// }
// }
// @Test//
// public void testH5Rget_attr() {
// long loc_id = H5fid;
// int ref_type = HDF5Constants.H5R_OBJECT2;
// long ret_val = -1;
// byte[] ref = null;
// String name = "";
// String objName = "/dset";
//
// try {
// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("testH5Rget_object: H5Rcreate_object " + err);
// }
// try {
// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
// assertNotNull(ref);
// assertTrue(dsid >= 0);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("TestH5Rget_region: " + err);
// }
// finally {
// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
// }
// }
}
java/test/TestH5S.java
+10 -10
View File
@@ -30,7 +30,7 @@ import org.junit.rules.TestName;
public class TestH5S {
@Rule public TestName testname = new TestName();
long H5sid = -1;
long H5sid = HDF5Constants.H5I_INVALID_HID;
int H5rank = 2;
long H5dims[] = {5, 5};
long H5maxdims[] = {10, 10};
@@ -181,7 +181,7 @@ public class TestH5S {
@Test
public void testH5Scopy() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int read_rank = -1;
try {
@@ -201,7 +201,7 @@ public class TestH5S {
@Test
public void testH5Sextent_copy() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
@@ -222,7 +222,7 @@ public class TestH5S {
@Test
public void testH5Sextent_equal() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
boolean result = false;
try {
@@ -252,8 +252,8 @@ public class TestH5S {
@Test
public void testH5Sencode_decode_null_dataspace() {
long sid = -1;
long decoded_sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
long decoded_sid = HDF5Constants.H5I_INVALID_HID;
byte[] null_sbuf = null;
boolean result = false;
@@ -299,8 +299,8 @@ public class TestH5S {
@Test
public void testH5Sencode_decode_scalar_dataspace() {
long sid = -1;
long decoded_sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
long decoded_sid = HDF5Constants.H5I_INVALID_HID;
byte[] scalar_sbuf = null;
boolean result = false;
int iresult = -1;
@@ -470,7 +470,7 @@ public class TestH5S {
@Test
public void testH5Sget_select_hyper() {
long space1 = -1;
long space1 = HDF5Constants.H5I_INVALID_HID;
long start[] = {0,0};
long stride[] = {1,1};
long count[] = {1,1};
@@ -508,7 +508,7 @@ public class TestH5S {
@Test
public void testH5Sget_select_valid() {
long space1 = -1;
long space1 = HDF5Constants.H5I_INVALID_HID;
long start[] = {1,0};
long stride[] = {1,1};
long count[] = {2,3};
java/test/TestH5Sbasic.java
+12 -12
View File
@@ -56,7 +56,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_scalar() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SCALAR);
@@ -75,7 +75,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_null() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_NULL);
@@ -125,7 +125,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
int rank = 2;
long dims[] = {5, 5};
@@ -148,7 +148,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple_unlimted() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
int rank = 2;
long dims[] = {5, 5};
@@ -171,7 +171,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple_unlimted_1d() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
int rank = 1;
long dims[] = {5};
@@ -194,7 +194,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple_max_default() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int rank = 2;
long dims[] = {5, 5};
@@ -213,7 +213,7 @@ public class TestH5Sbasic {
@Test
public void testH5Screate_simple_extent() {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
int rank = 2;
long dims[] = {5, 5};
long maxdims[] = {10, 10};
@@ -270,7 +270,7 @@ public class TestH5Sbasic {
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_adjust_rank_offset() throws Throwable {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
long offset[][] = {{0,1},{2,4},{5,6}};
try {
@@ -292,7 +292,7 @@ public class TestH5Sbasic {
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_intersect_block_rank_start() throws Throwable {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = new long[2];
long end[] = null;
@@ -308,7 +308,7 @@ public class TestH5Sbasic {
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_intersect_block_rank_end() throws Throwable {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = null;
long end[] = new long[2];
@@ -336,7 +336,7 @@ public class TestH5Sbasic {
@Test(expected = NullPointerException.class)
public void testH5Scombine_hyperslab_null_start() throws Throwable {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = null;
long stride[] = null;
long count[] = new long[2];
@@ -354,7 +354,7 @@ public class TestH5Sbasic {
@Test(expected = NullPointerException.class)
public void testH5Scombine_hyperslab_null_count() throws Throwable {
long sid = -1;
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = new long[2];
long stride[] = null;
long count[] = null;
java/test/TestH5T.java
+11 -11
View File
@@ -33,8 +33,8 @@ import org.junit.rules.TestName;
public class TestH5T {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testT.h5";
long H5fid = -1;
long H5strdid = -1;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = null;
@@ -129,7 +129,7 @@ public class TestH5T {
@Test
public void testH5Tarray_create() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
long[] adims = { 3, 5 };
try {
@@ -148,7 +148,7 @@ public class TestH5T {
@Test
public void testH5Tget_array_ndims() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = { 3, 5 };
@@ -176,7 +176,7 @@ public class TestH5T {
@Test
public void testH5Tget_array_dims() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
int ndims = 0;
long[] adims = { 3, 5 };
long[] rdims = new long[2];
@@ -207,7 +207,7 @@ public class TestH5T {
@Test
public void testH5Tenum_functions() {
long filetype_id =-1;
long filetype_id =HDF5Constants.H5I_INVALID_HID;
String enum_type ="Enum_type";
byte[] enum_val = new byte[1];
String enum_name = null;
@@ -275,7 +275,7 @@ public class TestH5T {
@Test
public void testH5Tenum_create_functions() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
byte[] enum_val = new byte[1];
// Create a enumerate datatype
@@ -315,7 +315,7 @@ public class TestH5T {
@Test
public void testH5Topaque_functions() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
String opaque_name = null;
// Create a opaque datatype
@@ -345,7 +345,7 @@ public class TestH5T {
@Test
public void testH5Tvlen_create() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
try {
filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
@@ -368,7 +368,7 @@ public class TestH5T {
@Test
public void testH5Tis_variable_str() {
long filetype_id = -1;
long filetype_id = HDF5Constants.H5I_INVALID_HID;
try {
filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
@@ -399,7 +399,7 @@ public class TestH5T {
@Test
public void testH5Tcompound_functions() {
long filetype_id =-1;
long filetype_id =HDF5Constants.H5I_INVALID_HID;
// Create a compound datatype
try {
java/test/TestH5Tbasic.java
+6 -6
View File
@@ -40,7 +40,7 @@ public class TestH5Tbasic {
@Test
public void testH5Tcopy() {
long H5strdid = -1;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
assertTrue("H5.H5Tcopy",H5strdid > 0);
@@ -57,7 +57,7 @@ public class TestH5Tbasic {
@Test
public void testH5Tequal() {
long H5strdid = -1;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
assertTrue("H5.H5Tcopy",H5strdid > 0);
@@ -76,7 +76,7 @@ public class TestH5Tbasic {
@Test
public void testH5Tequal_not() {
long H5strdid = -1;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_STD_U64LE);
assertTrue("H5.H5Tcopy",H5strdid > 0);
@@ -98,8 +98,8 @@ public class TestH5Tbasic {
String[] strs = {"a1234","b1234"};
int srcLen = 5;
int dstLen = 10;
long srcId = -1;
long dstId = -1;
long srcId = HDF5Constants.H5I_INVALID_HID;
long dstId = HDF5Constants.H5I_INVALID_HID;
int dimSize = strs.length;
byte[] buf = new byte[dimSize*dstLen];
@@ -131,7 +131,7 @@ public class TestH5Tbasic {
@Test
public void testH5Torder_size() {
long H5strdid = -1;
long H5strdid = HDF5Constants.H5I_INVALID_HID;
try {
// Fixed length string
H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
java/test/junit.sh.in
+27 -1
View File
@@ -46,6 +46,8 @@ HDFLIB_HOME="$top_srcdir/java/lib"
BLDDIR="."
BLDLIBDIR="$BLDDIR/testlibs"
HDFTEST_HOME="$top_srcdir/java/test"
TOOLS_TESTFILES="$top_srcdir/tools/testfiles"
JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
TESTJARFILE=jar@PACKAGE_TARNAME@test.jar
test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR
@@ -93,6 +95,7 @@ $HDFTEST_HOME/testfiles/JUnit-TestH5Lparams.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Lbasic.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Lcreate.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5R.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Rref.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5P.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5PData.txt
$HDFTEST_HOME/testfiles/JUnit-TestH5Pfapl.txt
@@ -146,7 +149,7 @@ COPY_LIBFILES_TO_BLDLIBDIR()
fi
fi
done
if [ "$IS_DARWIN" = "yes" ]; then
if [ "$IS_DARWIN" = "yes" ]; then
(cd testlibs; \
install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
@@ -248,6 +251,8 @@ COPY_DATAFILES_TO_BLDDIR()
$CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateL2.hdf
$CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateO1.hdf
$CP -f $HDFTEST_HOME/h5ex_g_iterate.orig $BLDDIR/h5ex_g_iterateO2.hdf
$CP -f $TOOLS_TESTFILES/trefer_reg.h5 $BLDDIR/trefer_reg.h5
$CP -f $TOOLS_TESTFILES/trefer_attr.h5 $BLDDIR/trefer_attr.h5
}
CLEAN_DATAFILES_AND_BLDDIR()
@@ -768,6 +773,27 @@ else
test yes = "$verbose" && $DIFF JUnit-TestH5R.txt JUnit-TestH5R.out |sed 's/^/ /'
fi
echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Rref"
TESTING JUnit-TestH5Rref
($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5Rref > JUnit-TestH5Rref.ext)
# Extract file name, line number, version and thread IDs because they may be different
sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
-e 's/line [0-9]*/line (number)/' \
-e 's/Time: [0-9]*[\.,[0-9]*]*/Time: XXXX/' \
-e 's/v[1-9]*\.[0-9]*\./version (number)\./' \
-e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
JUnit-TestH5Rref.ext > JUnit-TestH5Rref.out
if diff JUnit-TestH5Rref.out JUnit-TestH5Rref.txt > /dev/null; then
echo " PASSED JUnit-TestH5Rref"
else
echo "**FAILED** JUnit-TestH5Rref"
echo " Expected result differs from actual result"
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF JUnit-TestH5Rref.txt JUnit-TestH5Rref.out |sed 's/^/ /'
fi
echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P"
TESTING JUnit-TestH5P
($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH -ea org.junit.runner.JUnitCore test.TestH5P > JUnit-TestH5P.ext)
java/test/testfiles/JUnit-TestH5.txt
+3 -1
View File
@@ -3,8 +3,10 @@ JUnit version 4.11
.testJ2C
.testH5export_dataset
.testIsSerializable
.testH5export_attrdataset
.testH5garbage_collect
.testH5error_off
.testH5export_regdataset
.serializeToDisk
.testH5open
.testH5check_version
@@ -13,5 +15,5 @@ JUnit version 4.11
Time: XXXX
OK (11 tests)
OK (13 tests)
java/test/testfiles/JUnit-TestH5Rref.txt
+10
View File
@@ -0,0 +1,10 @@
JUnit version 4.11
.testH5Rget_region_dataset
.testH5Rget_object
.testH5Rget_region_attribute
.testH5Rget_obj_type3
Time: XXXX
OK (4 tests)

Some files were not shown because too many files have changed in this diff Show More