Commit Graph
54 Commits
Author SHA1 Message Date
Neil Fortner 333a3366ac Merge develop to feature/sparse_data (#5154) 2024-11-27 14:58:53 -06:00
Allen Byrne f17ca5689e Update for blosc2 in plugins and prefix hdf5 cmake varnames (#4468) 2024-05-10 13:01:28 -05:00
Quincey Koziol 0ce1a96b4e Don't print thread ID when the library isn't multithreaded. (#4428)
Corresponding changes to make error output for regression tests agnostic
to thread setting.

Signed-off-by: Quincey Koziol <quincey@koziol.cc>
2024-04-24 08:32:28 -07:00
Allen Byrne 1529ec0ab3 Develop tools move (#3580)
Reorganizes the tools files to support the VOL tests
2023-09-26 13:46:55 -07:00
Allen Byrne fa388e6ba4 Update java logger version (#2643) 2023-04-03 14:36:23 -07:00
Quincey Koziol c8b87fa320 Improve handling of copying of dynamic libraries and clean them up after (#1681)
test finishes.
2022-04-24 09:59:12 -05:00
Allen Byrne 2f34c433dc Update the java slf4j logging jars to latest 1.7.33 (#1369) 2022-01-18 07:44:11 -06:00
Allen Byrne 03217eca81 Add tests for H5Ocopy of new object refs (#1338)
* Add tests for H5Ocopy of new object refs

* Correct class name

* Skip test because of issue with debug assertions

* Update reference file

* Fix object examples for new refs
2022-01-08 08:19:52 -06:00
Allen Byrneandgithub-actions e21f7aaac4 Tools long double updates (#522)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace

* GH #359 implement and fix tools 1.6 API usage

* remove excessive comments

* Flip inits to correct ifdef section

* rework ifdef to be simpler

* format issue

* Reformat ifdef inits

* remove static attribute

* format compliance

* Update names

* Revert because logic relies on float not being int

* Changes noticed from creating merge of #412

* Double underscore change

* Correct compiler version variable used

* Remove header guard underscores

* Whitespace cleanup

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* correct window os name

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* HDFFV-11113 long double in tools

* HDFFV-11113 add note

* Disable long double tests for now

* HDFFV-11228 remove arbitrary CMake warning groups.

* Make each flag a string

* Some Javadoc warning fixes

* Updated javadoc fixes

* # WARNING: head commit changed in the meantime

HDFFV-11229 Fix long double usage in tools and java

Changed h5dump and h5ls to just print 128-bit for long double type.
Added test and file for dataset and attributes with all three float
types.

* Committing clang-format changes

* HDFFV-11229 Add release note

* HDFFV-11229 windows testfile needed

* fix typo

* Remove non supported message text

* HDFFV-11229 - change ldouble test to check both native and general

* HDFFV-11229 add second file compare

* HDFFV-11229 fix reference file

* HDFFV-11229 autotools check two refs

* HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output

* Committing clang-format changes

* Update release note

* Update attribute type of ref file

* Change source of ninja for macs

* try port instead of brew

* Recommended is to use brew.

* Undo non long double changes

* remove unneeded file

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-04-15 07:59:01 -05:00
Allen Byrneandgithub-actions 748da20bbc develop JNI export references and java updates (#467)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace

* GH #359 implement and fix tools 1.6 API usage

* remove excessive comments

* Flip inits to correct ifdef section

* rework ifdef to be simpler

* format issue

* Reformat ifdef inits

* remove static attribute

* format compliance

* Update names

* Revert because logic relies on float not being int

* Changes noticed from creating merge of #412

* Double underscore change

* Correct compiler version variable used

* Remove header guard underscores

* Whitespace cleanup

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* correct window os name

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-03-12 07:47:47 -06:00
Allen Byrne 216bff5778 #386 copyright corrections for java folder (#389)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace
2021-02-26 09:27:15 -06:00
Allen Byrne c7ffe683e5 Primary change is HDFFV-11212 - new refs and JNI (#372)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments
2021-02-25 15:12:57 -06:00
Larry Knox 2ea165efd0 Update license url part2 (#333)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
    file - files not in src or test.
2021-02-17 08:52:36 -06:00
Larry Knox da607fe463 Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib for
junit tests on Macs.
2020-07-07 10:52:58 -05:00
Larry Knox fc69de0e8a Lib files needed are now copied to a subdirectory in the java/test
directory, and on Macs the loader path for libhdf5.xxxs.so is changed
in the temporary copy of libhdf5_java.dylib.
Fix for HDFFV-11063
2020-07-02 11:29:12 -05:00
Larry Knox 32c483cb86 Copy lib files for junit.sh to temporary subdirectory of <build
directory>/java/test instead of to the prefix/lib directory.  Fix for
HDFFV-11063.
2020-06-27 15:39:53 -05:00
Allen Byrne b73c0aeaa9 HDFFV-10995 - Update all time instances 2020-01-08 12:48:48 -06:00
Allen Byrne 59ab02a6c5 HDFFV-10995 adjust testing to tolerate non-US locale 2020-01-08 12:44:48 -06:00
Larry Knox c234479258 Update junit.sh.in to copy lib files to $prefix/lib.
Correct checking for s3 and hdfs options.
2019-08-02 09:58:48 -05:00
Larry Knox 8008294578 Squashed commit of the following:
Merge changes from update_merged_S3_HDFS branch into develop.

commit d5034315aea88629929ac0c9c59ebfafd5f21a31
Merge: 9c48823 d3fdcd8
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Jul 25 08:24:53 2019 -0500

    Merge branch 'develop' into update_merged_S3_HDFS
2019-07-25 11:47:12 -05:00
Allen Byrne 7b39e544c0 Fix regex 2019-01-09 12:05:40 -06:00
Allen Byrne 25f272b4cb Correct regex option 2019-01-08 13:25:11 -06:00
Allen Byrne 591205127a HDFFV-10674 handle time as natural number 2019-01-07 10:39:09 -06:00
Allen Byrne 99d1f614f1 Add reference file to list 2018-12-21 10:39:15 -06:00
Allen Byrne f9e9c1ad0e HDFFV-10664 Add new functions and constants to java interface 2018-12-19 12:59:05 -06:00
Dana Robinson ef29549f0d Updated the Java tests so that they don't fail when the
error stack changes.
2018-11-12 13:31:10 -08:00
Allen Byrne 22eda96a9c Correct name of test jar 2018-08-23 14:53:05 -05:00
Allen Byrne d9d78f705e Only remove test jars 2018-08-23 14:21:16 -05:00
Allen Byrne 0651432031 Remove obsolete var 2018-08-23 13:19:35 -05:00
Allen Byrne 2417775bb3 DT location incorrect 2018-08-23 08:58:35 -05:00
Allen Byrne fbd17f62ea Add installib path to test command 2018-08-21 10:22:15 -05:00
Allen Byrne 085ec19a21 Fix OSX SIP for libs 2018-08-21 10:03:26 -05:00
Allen Byrne 3c07f4738f Add actual file names fo diff 2018-06-29 13:05:15 -05:00
Allen Byrne 792771d52a Update Java util lib, Refactor H5D write VL to match read 2018-06-27 17:53:47 -05:00
Allen Byrne 7c74d1f026 Correct script names 2018-05-24 10:50:15 -05:00
Allen Byrne 263db01df5 HDFFV-9739 only executes H5E tests in production 2018-05-23 08:55:11 -05:00
Allen Byrne 95a11297ee HDFFV-9739 dup test file for concurrent tests 2018-05-20 11:56:11 -05:00
Allen Byrne 67687ab9a2 HDFFV-9739 Fix autotools script 2018-05-20 10:46:49 -05:00
Allen Byrne 364760e66c HDFFV-9739 Change autotools test scripts 2018-05-18 12:35:40 -05:00
Allen Byrne 057a4e7fd6 Fix Java test for DEBUG_APIS 2018-04-09 15:07:29 -05:00
Allen Byrne 4de09ba34d Add chklog and chexe generation to Java autootools tests 2017-09-19 10:43:54 -05:00
Larry Knox 89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
lrknox 8452976de5 tools/test/h5diff/testh5diff.sh.in:
Add code to delete copies of test .h5 files copied from
         tools/testfiles/vds to tools/test/h5diff/testfiles when running
         "make check" for an in-source build.

    tools/test/misc/testh5repart.sh.in:
         Change the name of the temporary test directory from "testfiles"
         which is also used for 2 h5mkgrp test files under source control to
         "testrepart" to avoid deleting source controlled files when running
         "make check" in the source directory.

    Fix test scripts that remove source-controlled files during "make check" when run in-source.
    Fix test scripts that don't remove test files because they add files to test directories but don't remove them if the build directories are the same as the source directory.

    Fix any test source file or Makefile.am files for tests that leave data files are removed by neither "make check" nor "make distclean".
2017-01-12 22:20:11 -06:00
Allen Byrne 7a5eea36a5 Add missing character 2016-12-01 15:34:25 -06:00
Allen Byrne b990f5b2f7 Change where test copies libs because of osx1011 SIP 2016-12-01 15:12:33 -06:00
Allen Byrne 4ce65b8585 [svn-r30235] HDFFV-9730: Fix functions for delete to use a specific dir instead of a possibly uninitialized variable. 2016-08-01 12:20:21 -05:00
Allen Byrne 8e41b14811 [svn-r29601] Cleanup case of CMake commands in tools.
Update CTestCustom file for new tests.
Add connection from HDF5_ENABLE_USING_MEMCHECKER cmake option to library define USING_MEMCHECKER.
2016-03-31 09:02:24 -05:00
Allen Byrne a4ec4e3eb1 [svn-r29520] rename java test file because test modifies original file.
Delete copy when test is finished.
2016-03-22 15:02:33 -05:00
Allen Byrne 98e315ffff [svn-r29507] Add actual file name to delete functions to prevent accidental deletion of source files.
(HDFFV-9730 created for tools scripts, which is the basis for the java scripts)
2016-03-22 10:15:44 -05:00
Allen Byrne 9c570c7b42 [svn-r29480] Correct copy functions to test the directory 2016-03-21 11:06:52 -05:00