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<div class="textblock"><p>Navigate back: <a class="el" href="index.html" title="notitle">Main</a> </p><hr />
<p>The functions provided by the HDF5 API are grouped into the following <em>modules</em>:</p>
<table class="doxtable">
<tr>
<th>Modules</th></tr>
<tr valign="top">
<td><table class="doxtable">
<caption>Core Reference Manual Modules</caption>
<tr>
<th>Module</th><th colspan="4">Language</th><th>Description</th></tr>
<tr>
<th>Attributes (H5A)</th><td><a class="el" href="group___h5_a.html" title="Attributes (H5A)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_attribute.html" title="Attribute">C++</a></td><td><a class="el" href="group___f_h5_a.html" title="Fortran Attribute (H5A) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_a.html" title="Java Attribute (H5A) Interface">Java</a></td><td>HDF5 attribute is a small metadata object describing the nature and/or intended usage of a primary data object. </td></tr>
<tr>
<th>Datasets (H5D)</th><td><a class="el" href="group___h5_d.html" title="Datasets (H5D)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_data_set.html" title="DataSet">C++</a></td><td><a class="el" href="group___f_h5_d.html" title="Fortran Datasets (H5D) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_d.html" title="Java Datasets (H5D) Interface">Java</a></td><td>Manage HDF5 datasets, including the transfer of data between memory and disk and the description of dataset properties. </td></tr>
<tr>
<th>Dataspaces (H5S)</th><td><a class="el" href="group___h5_s.html" title="Dataspaces (H5S)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_data_space.html" title="DataSpace">C++</a></td><td><a class="el" href="group___f_h5_s.html" title="Fortran Dataspace (H5S) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_s.html" title="Java Dataspace (H5S) Interface">Java</a></td><td>HDF5 dataspaces describe the shape of datasets in memory or in HDF5 files. </td></tr>
<tr>
<th>Datatypes (H5T)</th><td><a class="el" href="group___h5_t.html" title="Datatypes (H5T)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_data_type.html" title="DataType">C++</a></td><td><a class="el" href="group___f_h5_t.html" title="Fortran Datatype (H5T) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_t.html" title="Java Datatype (H5T) Interface">Java</a></td><td>HDF5 datatypes describe the element type of HDF5 datasets and attributes. </td></tr>
<tr>
<th>Error Handling (H5E)</th><td><a class="el" href="group___h5_e.html" title="Error Handling (H5E)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_exception.html" title="Exception">C++</a></td><td><a class="el" href="group___f_h5_e.html" title="Fortran Error (H5E) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_e.html" title="Java Error (H5E) Interface">Java</a></td><td>HDF5 library error reporting. </td></tr>
<tr>
<th>Event Set (H5ES)</th><td><a class="el" href="group___h5_e_s.html" title="Event Set Interface (H5ES)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_e_s.html" title="Fortran Event Set (H5ES) Interface">Fortran</a></td><td>Java</td><td>HDF5 event set life cycle used with HDF5 VOL connectors that enable the asynchronous feature in HDF5. </td></tr>
<tr>
<th>Files (H5F)</th><td><a class="el" href="group___h5_f.html" title="Files (H5F)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_h5_file.html" title="H5File">C++</a></td><td><a class="el" href="group___f_h5_f.html" title="Fortran File (H5F) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_f.html" title="Java File (H5F) Interface">Java</a></td><td>Manage HDF5 files. </td></tr>
<tr>
<th>Filters (H5Z)</th><td><a class="el" href="group___h5_z.html" title="Filters (H5Z)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_z.html" title="Fortran Filter (H5Z) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_z.html" title="Java Filter (H5Z) Interface">Java</a></td><td>Manage HDF5 user-defined filters. </td></tr>
<tr>
<th>Groups (H5G)</th><td><a class="el" href="group___h5_g.html" title="Groups (H5G)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_group.html" title="Group">C++</a></td><td><a class="el" href="group___f_h5_g.html" title="Fortran Group (H5G) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_g.html" title="Java Group (H5G) Interface">Java</a></td><td>Manage HDF5 groups. </td></tr>
<tr>
<th>Identifiers (H5I)</th><td><a class="el" href="group___h5_i.html" title="Identifiers (H5I)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_id_component.html" title="IdComponent">C++</a></td><td><a class="el" href="group___f_h5_i.html" title="Fortran Identifier (H5I) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_i.html" title="Java Identifier (H5I) Interface">Java</a></td><td>Manage identifiers defined by the HDF5 library. </td></tr>
<tr>
<th>Library General (H5)</th><td><a class="el" href="group___h5.html" title="Library General (H5)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_h5_library.html" title="H5Library">C++</a></td><td><a class="el" href="group___f_h5.html" title="Fortran Library (H5) Interface">Fortran</a></td><td><a class="el" href="group___j_h5.html" title="HDF5 Library Java Interface">Java</a></td><td>Manage the life cycle of HDF5 library instances. </td></tr>
<tr>
<th>Links (H5L)</th><td><a class="el" href="group___h5_l.html" title="Links (H5L)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_l.html" title="Fortran Link (H5L) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_l.html" title="Java Link (H5L) Interface">Java</a></td><td>Manage HDF5 links and link types. </td></tr>
<tr>
<th>Objects (H5O)</th><td><a class="el" href="group___h5_o.html" title="Objects (H5O)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_o.html" title="Fortran Object (H5O) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_o.html" title="Java Object (H5O) Interface">Java</a></td><td>Manage HDF5 objects (groups, datasets, datatype objects). </td></tr>
<tr>
<th>Property Lists (H5P)</th><td><a class="el" href="group___h5_p.html" title="Property Lists (H5P)">C</a></td><td style="white-space: nowrap;"><a class="el" href="class_h5_1_1_prop_list.html" title="PropList">C++</a></td><td><a class="el" href="group___f_h5_p.html" title="Fortran Property List (H5P) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_p.html" title="Java Property List (H5P) Interface">Java</a></td><td>HDF5 property lists are the main vehicle to configure the behavior of HDF5 API functions. </td></tr>
<tr>
<th>Dynamically-loaded Plugins (H5PL)</th><td><a class="el" href="group___h5_p_l.html" title="Dynamically-loaded Plugins (H5PL)">C</a></td><td style="white-space: nowrap;">C++</td><td>Fortran</td><td><a class="el" href="group___j_h5_p_l.html" title="Java Plugin (H5PL) Interface">Java</a></td><td>Manage the loading behavior of HDF5 plugins. </td></tr>
<tr>
<th>References (H5R)</th><td><a class="el" href="group___h5_r.html" title="References (H5R)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_r.html" title="FH5R">Fortran</a></td><td><a class="el" href="group___j_h5_r.html" title="Java Reference (H5R) Interface">Java</a></td><td>Manage HDF5 references (HDF5 objects, attributes, and selections on datasets a.k.a. dataset regions). </td></tr>
<tr>
<th>Virtual File Driver (H5FD)</th><td><a class="el" href="group___h5_v_f_d.html" title="Virtual File Driver Features">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_v_f_d.html" title="Fortran VFD (H5VFD) Interface">Fortran</a></td><td>Java</td><td>Manage HDF5 Virtual File Driver. </td></tr>
<tr>
<th>VOL Connector (H5VL)</th><td><a class="el" href="group___h5_v_l.html" title="VOL connector (H5VL)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_v_l.html" title="Fortran VOL (H5VL) Interface">Fortran</a></td><td><a class="el" href="group___j_h5_v_l.html" title="Java VOL Connector (H5VL) Interface">Java</a></td><td>Manage HDF5 VOL connector plugins. </td></tr>
</table>
<table class="doxtable">
<caption>High-level Reference Manual Modules</caption>
<tr>
<th>Module</th><th colspan="4">Language</th><th>Description</th></tr>
<tr>
<th>HDF5 Lite APIs (H5LT,H5LD)</th><td><a class="el" href="group___h5_l_t.html" title="HDF5 Lite APIs (H5LT,H5LD)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_l_t.html" title="Fortran High Level Lite (H5LT) Interface">Fortran</a></td><td>Java</td><td>Functions to simplify creating and manipulating datasets, attributes and other features. </td></tr>
<tr>
<th>HDF5 Images API (H5IM)</th><td><a class="el" href="group___h5_i_m.html" title="HDF5 Images API (H5IM)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_i_m.html" title="Fortran High Level Images (H5IM) Interface">Fortran</a></td><td>Java</td><td>Creating and manipulating HDF5 datasets intended to be interpreted as images. </td></tr>
<tr>
<th>HDF5 Table APIs (H5TB)</th><td><a class="el" href="group___h5_t_b.html" title="HDF5 Table APIs (H5TB)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_t_b.html" title="Fortran High Level Table (H5TB) Interface">Fortran</a></td><td>Java</td><td>Creating and manipulating HDF5 datasets intended to be interpreted as tables. </td></tr>
<tr>
<th>HDF5 Packet Table APIs (H5PT)</th><td><a class="el" href="group___h5_p_t.html" title="HDF5 Packet Table APIs (H5PT)">C</a></td><td style="white-space: nowrap;">C++</td><td>Fortran</td><td>Java</td><td>Creating and manipulating HDF5 datasets to support append- and read-only operations on table data. </td></tr>
<tr>
<th>HDF5 Dimension Scales APIs (H5DS)</th><td><a class="el" href="group___h5_d_s.html" title="HDF5 Dimension Scales APIs (H5DS)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_d_s.html" title="Fortran High Level Dimension Scales (H5DS) Interface">Fortran</a></td><td>Java</td><td>Creating and manipulating HDF5 datasets that are associated with the dimension of another HDF5 dataset. </td></tr>
<tr>
<th>HDF5 Optimizations APIs (H5DO)</th><td><a class="el" href="group___h5_d_o.html" title="HDF5 Optimizations APIs (H5DO)">C</a></td><td style="white-space: nowrap;">C++</td><td><a class="el" href="group___f_h5_d_o.html" title="Fortran High Level Optimized Interface">Fortran</a></td><td>Java</td><td>Bypassing default HDF5 behavior in order to optimize for specific use cases. </td></tr>
<tr>
<th>Extensions (H5LR, H5LT)</th><td><a class="el" href="group___h5_l_r.html" title="Extensions">C</a></td><td style="white-space: nowrap;">C++</td><td>Fortran</td><td>Java</td><td></td></tr>
</table>
</td></tr>
<tr>
<td><table class="doxtable">
<caption>Additional Java Reference Manual Modules</caption>
<tr>
<td><a class="el" href="_h_d_f5_c_o_n_s_t.html" title="Constants and Enumerated Types">Constants and Enumerated Types</a></td><td>This class contains C constants and enumerated types of HDF5 library. </td></tr>
<tr>
<td><a class="el" href="_h_d_f_n_a_t_i_v_e.html" title="Native Arrays of Numbers">Native Arrays of Numbers</a></td><td>This class encapsulates native methods to deal with arrays of numbers, converting from numbers to bytes and bytes to numbers. </td></tr>
<tr>
<td><a class="el" href="_h_d_f_a_r_r_a_y.html" title="Java Array Conversion">Java Array Conversion</a></td><td>This is a class for handling multidimensional arrays for HDF. </td></tr>
<tr>
<td><a class="el" href="_e_r_r_o_r_s.html" title="Errors and Exceptions">Errors and Exceptions</a></td><td>The class HDF5Exception returns errors from the Java HDF5 Interface. </td></tr>
</table>
</td></tr>
<tr>
<td><a class="el" href="predefined_datatypes_tables.html" title="HDF5 Predefined Datatypes">HDF5 Predefined Datatypes</a><br />
<a class="el" href="deprecated.html" title="Deprecated List">Deprecated List</a><br />
Functions with <a class="el" href="group___a_s_y_n_c.html" title="Asynchronous Functions">Asynchronous Functions</a><br />
<a class="el" href="api-compat-macros.html" title="API Compatibility Macros">API Compatibility Macros</a> </td></tr>
</table>
<p>Follow these simple rules and stay out of trouble:</p>
<ul>
<li><b>Handle discipline:</b> The HDF5 API is rife with handles or identifiers, which you typically obtain by creating new HDF5 items, copying items, or retrieving facets of items. Consequently, <b>and most importantly</b>, you are responsible for releasing the underlying resources via the matching <span class="tt">H5*close()</span> call, or deal with the consequences of resource leakage. </li>
<li><b>Closed means closed:</b> Do not pass identifiers that were previously <span class="tt">H5*close()</span>-d to other API functions! It will generate an error. </li>
<li><b>Dynamic memory allocation:</b> The API contains a few functions in which the HDF5 library dynamically allocates memory on the caller's behalf. The caller owns this memory and eventually must free it by calling <a class="el" href="group___h5.html#ga71872bf6445cba956da86d4762b662cf" title="Frees memory allocated by the HDF5 library.">H5free_memory()</a> and not language-explicit memory functions. </li>
<li><b>Don't modify while iterating:</b> Do not modify the underlying collection when an iteration is in progress! </li>
<li><b>Use of locations:</b> Certain API functions, typically called <span class="tt">H5***_by_name</span> use a combination of identifiers and path names to refer to HDF5 objects. If the identifier fully specifies the object in question, pass <span class="tt">'.'</span> (a dot) for the name!</li>
</ul>
<p><a class="anchor" id="cpp_c_api_note"></a></p><dl class="section attention"><dt>Attention</dt><dd><b>C++ Developers using HDF5 C-API functions beware:</b><br />
Several functions in this C-API take function pointers or callbacks as arguments. Examples include <a class="el" href="group___l_a_p_l.html#ga8850042eed51777866d7bd0d050cfdc2" title="Sets the external link traversal callback function in a link access property list.">H5Pset_elink_cb()</a>, <a class="el" href="group___d_x_p_l.html#ga10a80b29444d933da1aa2003f46cf003" title="Sets user-defined datatype conversion callback function.">H5Pset_type_conv_cb()</a>, <a class="el" href="group___c_o_n_v.html#ga9442478475a03357ee47fa035df0228a" title="Converts data from one specified datatype to another.">H5Tconvert()</a>, and <a class="el" href="group___h5_e.html#ga4ecc0f6a1ea5bb821373a5a7b8070655" title="Walks the specified error stack, calling the specified function.">H5Ewalk2()</a>. Application code must ensure that those callback functions return normally such to allow the HDF5 to manage its resources and maintain a consistent state. For instance, those functions must not use the C <code>setjmp</code> / <code>longjmp</code> mechanism to leave those callback functions. Within the context of C++, any exceptions thrown within the callback function must be caught, such as with a <span class="tt">catch(…)</span> statement. Any exception state can be placed within the provided user data function call arguments, and may be thrown again once the calling function has returned. Exceptions raised and not handled inside the callback are not supported as it might leave the HDF5 library in an inconsistent state. Similarly, using C++20 coroutines cannot be used as callbacks, since they do not support plain return statements. If a callback function yields execution to another C++20 coroutine calling HDF5 functions as well, this may lead to undefined behavior.</dd></dl>
<dl class="section user"><dt>C++ API Guide</dt><dd>New to the HDF5 C++ API? See the <a class="el" href="h5_cpp_intro.html" title="C++ API Introduction">C++ API Introduction</a> for an introduction, class mapping guide, and examples.</dd></dl>
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