mirror of
https://github.com/HDFGroup/hdf5.git
synced 2026-10-04 04:03:26 +03:00
dependabot[bot]
3c617d23a5
* Bump the github-actions group across 1 directory with 11 updates Bumps the github-actions group with 11 updates in the / directory: | Package | From | To | | --- | --- | --- | | [actions/cache](https://github.com/actions/cache) | `5.0.1` | `5.0.3` | | [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.2.1` | `4.2.3` | | [softwareforgood/check-artifact-v4-existence](https://github.com/softwareforgood/check-artifact-v4-existence) | `0.3.0` | `0.4.1` | | [github/codeql-action](https://github.com/github/codeql-action) | `3.31.9` | `4.32.2` | | [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `0.5.11` | `1.1.0` | | [cygwin/cygwin-install-action](https://github.com/cygwin/cygwin-install-action) | `7d2dc1e241644c3318bed9ec74115d1929baa681` | `2566376092c4e280f21131be027af3f5bb2420a4` | | [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) | `5.1.1` | `6.0.0` | | [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.3.4` | `1.4.2` | | [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `1.3.1` | `1.3.5` | | [mpi4py/setup-mpi](https://github.com/mpi4py/setup-mpi) | `1.4.1` | `1.4.2` | | [actions/setup-python](https://github.com/actions/setup-python) | `6.1.0` | `6.2.0` | vmactions/openbsd-vm@d6c29ce1b4 (`1.3.5`) failed to run ssh on the github runner. 271a1ba62300483cfc58345ff9f425f1349a2cab for v1.3.4 was used instead.
384 lines
17 KiB
YAML
384 lines
17 KiB
YAML
name: hdf5 callable parallel report to cdash
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# Triggers hdf5 dev parallel CTest script the workflow on a call from another workflow
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on:
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workflow_call:
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inputs:
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snap_name:
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description: 'The name in the source tarballs'
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type: string
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required: false
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default: hdfsrc
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file_base:
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description: "The common base name of the source tarballs"
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required: true
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type: string
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use_environ:
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description: 'Environment to locate files'
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type: string
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required: true
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default: snapshots
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build_mode:
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description: "release vs. debug build"
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required: true
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type: string
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cmake_version:
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description: "3.26.0 or later, latest"
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required: true
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type: string
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permissions:
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contents: read
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env:
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CTEST_OUTPUT_ON_FAILURE: 1
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jobs:
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Build_parallel_windows:
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runs-on: windows-latest
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strategy:
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matrix:
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mpi: [ 'msmpi', 'intelmpi']
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name: "Parallel ${{ matrix.mpi }} Windows-${{ inputs.build_mode }}"
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steps:
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- uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6.0.1
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- name: Install Dependencies (Windows)
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run: choco install ninja
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- name: Install CMake
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uses: lukka/get-cmake@f176ccd3f28bda569c43aae4894f06b2435a3375 # latest
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with:
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cmakeVersion: ${{ inputs.cmake_version }}
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ninjaVersion: latest
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- name: Enable Developer Command Prompt
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uses: ilammy/msvc-dev-cmd@0b201ec74fa43914dc39ae48a89fd1d8cb592756 # v1.13.0
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- name: Setup MPI (${{ matrix.mpi }})
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id: setup-mpi
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uses: mpi4py/setup-mpi@dbbb80b116bea57fc1788daf7dbbf7ab3df3a0f1 # v1
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with:
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mpi: ${{ matrix.mpi }}
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- name: Set MPI Environment Variables (${{ matrix.mpi }})
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run: |
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echo "CC=mpicc" >> $GITHUB_ENV
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echo "FC=mpif90" >> $GITHUB_ENV
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- name: Set file base name (${{ matrix.mpi }})
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id: set-file-base
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run: |
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FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
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echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
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if [[ '${{ inputs.use_environ }}' == 'release' ]]
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then
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SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
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else
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SOURCE_NAME_BASE=$(echo "hdfsrc")
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fi
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echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
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shell: bash
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# Get files created by release script
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- name: Get zip-tarball (Windows)
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uses: actions/download-artifact@37930b1c2abaa49bbe596cd826c3c89aef350131 # v7.0.0
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with:
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name: zip-tarball
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path: ${{ github.workspace }}
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- name: using powershell
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shell: pwsh
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run: Get-Location
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- name: List files for the space (Windows)
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run: |
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Get-ChildItem -Path ${{ github.workspace }}
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Get-ChildItem -Path ${{ runner.workspace }}
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shell: pwsh
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- name: Uncompress source (Windows)
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working-directory: ${{ github.workspace }}
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run: 7z x ${{ steps.set-file-base.outputs.FILE_BASE }}.zip
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shell: bash
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- name: Symlink script files for the space (${{ matrix.mpi }})
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uses: ./.github/actions/symlink-ctest-scripts
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with:
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source-base: ${{ steps.set-file-base.outputs.SOURCE_BASE }}
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- name: List files for the hdf5 (${{ matrix.mpi }})
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run: |
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Get-ChildItem -Path ${{ runner.workspace }}/hdf5
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shell: pwsh
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- name: Create options file (${{ matrix.mpi }})
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uses: "DamianReeves/write-file-action@1d019960841941be46b139298996df6f139cc7a4" # master
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with:
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path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
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write-mode: overwrite
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contents: |
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set (CTEST_DROP_SITE_INIT "my.cdash.org")
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# Change following line to submit to your CDash dashboard to a different CDash project
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#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
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set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
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set (ctest_test_args INCLUDE MPI_TEST)
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set (CTEST_TEST_TIMEOUT 300 CACHE STRING "Maximum test time allowed.")
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set (MODEL "MPI")
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set (GROUP "MPI")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }}")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_LOCALCONTENT:BOOL=OFF")
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- name: Run CTest script (${{ matrix.mpi }})
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run: |
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cd "${{ runner.workspace }}/hdf5"
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ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-${{ matrix.mpi }},LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=VS202264,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -O hdf5.log
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shell: bash
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continue-on-error: true
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# Save log files created by CTest script
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- name: Save log (${{ matrix.mpi }})
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uses: actions/upload-artifact@b7c566a772e6b6bfb58ed0dc250532a479d7789f # v5
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with:
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name: windows-${{ matrix.mpi }}-log
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path: ${{ runner.workspace }}/hdf5/hdf5.log
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Build_parallel_linux:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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mpi: [ 'mpich', 'openmpi', 'intelmpi']
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name: "Parallel ${{ matrix.mpi }} Linux-${{ inputs.build_mode }}"
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steps:
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- name: Get Actions
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uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6.0.1
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with:
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sparse-checkout: .github/actions
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- name: Install Dependencies (${{ matrix.mpi }})
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run: |
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sudo apt-get update
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sudo apt-get install ninja-build graphviz curl
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sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
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sudo apt install gcc-12 g++-12 gfortran-12
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sudo apt install libaec0 libaec-dev
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- name: Install CMake
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uses: lukka/get-cmake@f176ccd3f28bda569c43aae4894f06b2435a3375 # latest
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with:
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cmakeVersion: ${{ inputs.cmake_version }}
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ninjaVersion: latest
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- name: Setup MPI (${{ matrix.mpi }})
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id: setup-mpi
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uses: mpi4py/setup-mpi@dbbb80b116bea57fc1788daf7dbbf7ab3df3a0f1 # v1
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with:
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mpi: ${{ matrix.mpi }}
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- name: Set MPI Environment Variables (${{ matrix.mpi }})
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run: |
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echo "CC=mpicc" >> $GITHUB_ENV
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echo "FC=mpif90" >> $GITHUB_ENV
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- name: Set file base name (${{ matrix.mpi }})
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id: set-file-base
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run: |
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FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
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echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
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if [[ '${{ inputs.use_environ }}' == 'release' ]]
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then
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SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
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else
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SOURCE_NAME_BASE=$(echo "hdfsrc")
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fi
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echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
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shell: bash
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# Get files created by release script
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- name: Get tgz-tarball (${{ matrix.mpi }})
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uses: actions/download-artifact@37930b1c2abaa49bbe596cd826c3c89aef350131 # v7.0.0
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with:
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name: tgz-tarball
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path: ${{ github.workspace }}
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- name: List files for the space (Linux)
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run: |
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ls -l ${{ github.workspace }}
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ls ${{ runner.workspace }}
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- name: Uncompress source (Linux)
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run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
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- name: Symlink script files for the space (${{ matrix.mpi }})
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uses: ./.github/actions/symlink-ctest-scripts
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with:
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source-base: ${{ steps.set-file-base.outputs.SOURCE_BASE }}
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- name: List files for the hdf5 (${{ matrix.mpi }})
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run: |
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ls ${{ runner.workspace }}/hdf5
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- name: Create options file (${{ matrix.mpi }})
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uses: "DamianReeves/write-file-action@1d019960841941be46b139298996df6f139cc7a4" # master
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with:
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path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
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write-mode: overwrite
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contents: |
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set (CTEST_DROP_SITE_INIT "my.cdash.org")
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# Change following line to submit to your CDash dashboard to a different CDash project
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#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
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set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
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set (ctest_test_args INCLUDE MPI_TEST)
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set (CTEST_TEST_TIMEOUT 600 CACHE STRING "Maximum test time allowed.")
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set (MODEL "MPI")
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set (GROUP "MPI")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }}")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_LOCALCONTENT:BOOL=OFF")
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- name: Run CTest script (${{ matrix.mpi }})
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run: |
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cd "${{ runner.workspace }}/hdf5"
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ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-${{ matrix.mpi }},LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=Unix,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -O hdf5.log
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shell: bash
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continue-on-error: true
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# Save log files created by CTest script
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- name: Save log (${{ matrix.mpi }})
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uses: actions/upload-artifact@b7c566a772e6b6bfb58ed0dc250532a479d7789f # v5
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with:
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name: linux-${{ matrix.mpi }}-log
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path: ${{ runner.workspace }}/hdf5/hdf5.log
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Build_parallel_intelmpi_macos:
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runs-on: macos-latest
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strategy:
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matrix:
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mpi: [ 'mpich', 'openmpi']
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name: "Parallel ${{ matrix.mpi }} macos-${{ inputs.build_mode }}"
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steps:
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- uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6.0.1
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- name: Install Dependencies (MacOS_latest)
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run: brew install ninja
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- name: Setup MPI (${{ matrix.mpi }})
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id: setup-mpi
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uses: mpi4py/setup-mpi@dbbb80b116bea57fc1788daf7dbbf7ab3df3a0f1 # v1
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with:
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mpi: ${{ matrix.mpi }}
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- name: Set MPI Environment Variables (${{ matrix.mpi }})
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run: |
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echo "CC=mpicc" >> $GITHUB_ENV
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echo "FC=mpif90" >> $GITHUB_ENV
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- name: Set file base name (${{ matrix.mpi }})
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id: set-file-base
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run: |
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FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
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echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
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if [[ '${{ inputs.use_environ }}' == 'release' ]]
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then
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SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
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else
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SOURCE_NAME_BASE=$(echo "hdfsrc")
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fi
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echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
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# Get files created by release script
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- name: Get tgz-tarball (${{ matrix.mpi }})
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uses: actions/download-artifact@37930b1c2abaa49bbe596cd826c3c89aef350131 # v7.0.0
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with:
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name: tgz-tarball
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path: ${{ github.workspace }}
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- name: List files for the space (${{ matrix.mpi }})
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run: |
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ls -l ${{ github.workspace }}
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ls ${{ runner.workspace }}
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- name: Uncompress source (${{ matrix.mpi }})
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run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
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- name: Symlink script files for the space (${{ matrix.mpi }})
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uses: ./.github/actions/symlink-ctest-scripts
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with:
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source-base: ${{ steps.set-file-base.outputs.SOURCE_BASE }}
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- name: List files for the hdf5 (${{ matrix.mpi }})
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run: |
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ls ${{ runner.workspace }}/hdf5
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- name: Create options file (${{ matrix.mpi }})
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uses: "DamianReeves/write-file-action@1d019960841941be46b139298996df6f139cc7a4" # master
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with:
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path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
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write-mode: overwrite
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contents: |
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set (CTEST_DROP_SITE_INIT "my.cdash.org")
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# Change following line to submit to your CDash dashboard to a different CDash project
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#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
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set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
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set (ctest_test_args INCLUDE MPI_TEST)
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set (CTEST_TEST_TIMEOUT 600 CACHE STRING "Maximum test time allowed.")
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set (MODEL "MPI")
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set (GROUP "MPI")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }}")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
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|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
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|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_LOCALCONTENT:BOOL=OFF")
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|
|
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- name: Run CTest script (${{ matrix.mpi }})
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run: |
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cd "${{ runner.workspace }}/hdf5"
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|
ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-${{ matrix.mpi }},LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=Unix,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -O hdf5.log
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|
shell: bash
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|
continue-on-error: true
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|
|
|
# Save log files created by CTest script
|
|
- name: Save log (${{ matrix.mpi }})
|
|
uses: actions/upload-artifact@b7c566a772e6b6bfb58ed0dc250532a479d7789f # v5
|
|
with:
|
|
name: macos-${{ matrix.mpi }}-log
|
|
path: ${{ runner.workspace }}/hdf5/hdf5.log
|