mirror of
https://github.com/HDFGroup/hdf5.git
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* Fix MPI Fortran configuration for HDF5Examples (#6206) When building Fortran parallel examples without MPI wrappers, the compiler couldn't find mpi.mod because MPI_Fortran_INCLUDE_DIRS was not populated. This occurred because find_package(MPI) was only called for C, not Fortran. Added enable_language(Fortran) and find_package(MPI REQUIRED COMPONENTS Fortran) to properly configure MPI for Fortran examples, ensuring MPI include directories and libraries are correctly set. * Adds RFCs to the RFC table (#6190) * Added two RFCs to the RFC table "Adding support for digitally signed plugins to HDF5" " Write-Ahead log" * Updated to use the ACM link * Add HDF5 2.0.0 Library Migration Guide (#6183) * Add HDF5 2.0.0 Library Migration Guide * Revise HDF5 migration guide for version 2.0.0 Use 2.0.0 consistently. * Clarify API changes in HDF5 2.0.0 Migration Guide * Fixes the "multiple @param documentation sections" doxygen warnings (#6195) Addresses the "multiple @ param documentation sections" warnings are caused by the interaction of three things: 1. MACRO_EXPANSION = YES with EXPAND_ONLY_PREDEF = NO in Doxyfile.in 2. Versioned API macros in H5version.h like: \def documentation in APIVersions.dox like: 3. \def H5Tarray_create \api_vers_2{H5Tarray_create,H5Tarray_create1,H5Tarray_create2} Because Doxygen expands all macros, it sees H5Tarray_create as an alias for H5Tarray_create1. It then associates documentation from both the \def block (for the macro) and the function's own doc block (with \param entries) with the same function — resulting in "multiple @ param documentation sections." * Update Doxygen version from 1.16.0 to 1.16.1 Use Doxygen 1.16.1 for all platforms. This version includes the latest bug fixes and improvements while maintaining compatibility with our documentation format. * Fix Windows Doxygen installation for version 1.16.1 Handle different Windows binary naming conventions across Doxygen versions: - 1.16.1 uses: doxygen-VERSION.windows.x64.bin.zip - 1.16.0 uses: doxygen-VERSION.x64.bin.zip Try the newer naming convention first, then fall back to the older one if the download fails. This ensures compatibility across versions. * Use ssciwr/doxygen-install in setup-doxygen action Replace direct installation of official Doxygen binaries with ssciwr/doxygen-install action. This avoids Java documentation parsing errors that occur with official binaries but not with distribution builds. The setup-doxygen action now serves as a thin wrapper around ssciwr/doxygen-install@f13be16c83 (v1), using commit hash for security and reproducibility. * Remove redundant version specification from workflows The setup-doxygen action already has a default version (1.16.1), so explicit version specification in workflows is unnecessary. This follows DRY principles and makes version updates simpler. * Updates to #6205 (#6208) * Fix MPI Fortran configuration for HDF5Examples (#6205) When building Fortran parallel examples standalone without MPI wrappers, the compiler cannot find mpi.mod because MPI_Fortran_INCLUDE_DIRS is not populated. * Use MPI::MPI_Fortran imported target instead of raw MPI variables Replace manual MPI_Fortran_LIBRARIES, MPI_Fortran_LINK_FLAGS, and MPI_Fortran_INCLUDE_DIRS usage with the MPI::MPI_Fortran imported target, which transitively carries all include dirs, compile flags, and link flags. This eliminates the CMAKE_Fortran_EXE_LINKER_FLAGS hack and the manual target_include_directories in H5PAR. * Update nvhpc version to 26.1 with CUDA version 13.1. (#6213) # branches: [develop] * Inherit Debug C build flags in Developer build mode (#6182) * Bump the github-actions group across 1 directory with 11 updates (#6215) * Bump the github-actions group across 1 directory with 11 updates Bumps the github-actions group with 11 updates in the / directory: | Package | From | To | | --- | --- | --- | | [actions/cache](https://github.com/actions/cache) | `5.0.1` | `5.0.3` | | [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.2.1` | `4.2.3` | | [softwareforgood/check-artifact-v4-existence](https://github.com/softwareforgood/check-artifact-v4-existence) | `0.3.0` | `0.4.1` | | [github/codeql-action](https://github.com/github/codeql-action) | `3.31.9` | `4.32.2` | | [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `0.5.11` | `1.1.0` | | [cygwin/cygwin-install-action](https://github.com/cygwin/cygwin-install-action) | `7d2dc1e241644c3318bed9ec74115d1929baa681` | `2566376092c4e280f21131be027af3f5bb2420a4` | | [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) | `5.1.1` | `6.0.0` | | [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.3.4` | `1.4.2` | | [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `1.3.1` | `1.3.5` | | [mpi4py/setup-mpi](https://github.com/mpi4py/setup-mpi) | `1.4.1` | `1.4.2` | | [actions/setup-python](https://github.com/actions/setup-python) | `6.1.0` | `6.2.0` | vmactions/openbsd-vm@d6c29ce1b4 (`1.3.5`) failed to run ssh on the github runner. 271a1ba62300483cfc58345ff9f425f1349a2cab for v1.3.4 was used instead. * Fix issue with some Subfiling VFD test files not getting deleted (#6212) * CMake: Fix Fortran cross-compilation support Refactor the cross-compilation infrastructure to rely on the standard CMAKE_CROSSCOMPILING_EMULATOR variable instead of the custom CROSSCOMPILING_PATH environment hack. Key changes: - Removed `ENVIRONMENT "${CROSSCOMPILING_PATH}"` from all test definitions. - Updated custom commands (e.g., H5match_types, H5_gen) to invoke the emulator explicitly when cross-compiling. - Updated ConfigureChecks.cmake and HDF5UseFortran.cmake to enable `try_run` checks when an emulator is defined. - Added config/toolchain/mingw-w64-x86-64-wine.sh wrapper to automatically locate MinGW runtime libraries (like libgfortran) for Wine execution. - Cleaned up toolchain files to remove hardcoded emulator paths, deferring configuration to the build environment. * Add Doxygen setup that results in missing Doygen documentation. (#6217) * Added setup-doxygen action in ctest.yml Ubuntu gcc workflow. * Also added actions/checkout for setup-doxygen. * Fixes link checker failure (#6219) Removed https:// as a workaround to avoid error by the link checker. * Remove force-setting of ZLIB_USE_EXTERNAL / SZIP_USE_EXTERNAL (#6222) Removes the force-setting of ZLIB_USE_EXTERNAL and SZIP_USE_EXTERNAL to ON when HDF5_ALLOW_EXTERNAL_SUPPORT is GIT or TGZ so that zlib and szip can be independently built from the system or externally as desired * Truncate Subfiling VFD's stub file when truncating subfiles (#6210) Ensure that the Subfiling VFD's stub file gets truncated when subfiles are being truncated to avoid a potentially unreadable file when the EOF doesn't match the stored EOF value Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add CMake function to extract pkg-config info from libraries (#6220) * Consistent extension for C++ (#6214) Except for this file, all use cpp instead of cxx. No obvious reason why the same file types should have different extensions. * Enable Windows ARM64 CTest CI for release binaries (#6177) * ci: add Windows ARM64 MSVC CTest job * ci: add MSYS2 clangarm64 build on Windows ARM64 * cmake: add MSVC ARM64 presets for Windows * zlib: fix MSVC static library flags for ARM64 builds * Renamed .hxx file to .h and updated the #include for it. * Committing clang-format changes --------- Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: Gerd Heber <gheber@hdfgroup.org> Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Julien Schueller <schueller@phimeca.com> Co-authored-by: Martin Diehl <mail@martin-diehl.net> Co-authored-by: Harish RS <harish.rajaselvan@multicorewareinc.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
154 lines
4.8 KiB
CMake
154 lines
4.8 KiB
CMake
#
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# Copyright by The HDF Group.
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# All rights reserved.
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#
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# This file is part of HDF5. The full HDF5 copyright notice, including
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# terms governing use, modification, and redistribution, is contained in
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# the LICENSE file, which can be found at the root of the source code
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# distribution tree, or in https://www.hdfgroup.org/licenses.
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# If you do not have access to either file, you may request a copy from
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# help@hdfgroup.org.
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#
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##############################################################################
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##############################################################################
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### T E S T I N G ###
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##############################################################################
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##############################################################################
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set (HL_REFERENCE_TEST_FILES
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dtype_file.txt
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image8.txt
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sepia.pal
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earth.pal
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image24pixel.txt
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image24plane.txt
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usa.wri
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test_table_be.h5
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test_table_cray.h5
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test_table_le.h5
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dsdata.txt
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dslat.txt
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dslon.txt
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test_ds_be.h5
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test_ds_be_new_ref.h5
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test_ds_le.h5
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test_ds_le_new_ref.h5
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test_ld.h5
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test_table.h5.ddl
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)
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# --------------------------------------------------------------------
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#-- Copy the necessary files.
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# --------------------------------------------------------------------
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foreach (h5_file ${HL_REFERENCE_TEST_FILES})
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HDFTEST_COPY_FILE ("${PROJECT_SOURCE_DIR}/testfiles/${h5_file}" "${HDF5_HL_TEST_BINARY_DIR}/testfiles/${h5_file}" "hl_test_files")
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endforeach ()
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add_custom_target (hl_test_files ALL COMMENT "Copying files needed by hl_test tests" DEPENDS ${hl_test_files_list})
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# Remove any output file left over from previous test run
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set (test_hl_CLEANFILES
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combine_tables1.h5
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combine_tables2.h5
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file_img1.h5
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file_img2.h5
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test_append.h5
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h5do_compat.h5
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test_detach.h5
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test_ds1.h5
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test_ds2.h5
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test_ds3.h5
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test_ds4.h5
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test_ds5.h5
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test_ds6.h5
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test_ds7.h5
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test_ds8.h5
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test_ds9.h5
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test_ds10.h5
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test_image1.h5
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test_image2.h5
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test_image3.h5
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test_lite1.h5
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test_lite2.h5
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test_lite3.h5
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test_lite4.h5
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test_packet_compress.h5
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test_packet_table.h5
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test_packet_table_vlen.h5
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testfl_packet_table_vlen.h5
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test_table.h5
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)
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add_test (
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NAME HL_test-clear-objects
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COMMAND ${CMAKE_COMMAND} -E remove ${test_hl_CLEANFILES}
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)
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set_tests_properties (HL_test-clear-objects PROPERTIES
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FIXTURES_SETUP clear_test_hl
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WORKING_DIRECTORY ${HDF5_HL_TEST_BINARY_DIR}
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)
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add_test (
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NAME HL_test-clean-objects
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COMMAND ${CMAKE_COMMAND} -E remove ${test_hl_CLEANFILES}
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)
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set_tests_properties (HL_test-clean-objects PROPERTIES
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FIXTURES_CLEANUP clear_test_hl
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WORKING_DIRECTORY ${HDF5_HL_TEST_BINARY_DIR}
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)
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# --------------------------------------------------------------------
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# Macro used to add a unit test
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# --------------------------------------------------------------------
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macro (HL_ADD_TEST hl_name)
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set (current_test_name "HL_${hl_name}")
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if (HDF5_ENABLE_USING_MEMCHECKER)
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add_test (NAME HL_${hl_name} COMMAND $<TARGET_FILE:hl_${hl_name}>)
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else ()
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add_test (NAME HL_${hl_name} COMMAND "${CMAKE_COMMAND}"
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-D "TEST_PROGRAM=$<TARGET_FILE:hl_${hl_name}>"
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-D "TEST_ARGS:STRING="
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-D "TEST_EXPECT=0"
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-D "TEST_SKIP_COMPARE=TRUE"
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-D "TEST_OUTPUT=hl_${hl_name}.txt"
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#-D "TEST_REFERENCE=hl_${hl_name}.out"
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-D "TEST_FOLDER=${HDF5_HL_TEST_BINARY_DIR}"
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-P "${HDF_RESOURCES_DIR}/runTest.cmake"
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)
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if ("hl_name" STREQUAL "test_table")
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add_test (
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NAME H5DUMP-HL_${hl_name}
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COMMAND "${CMAKE_COMMAND}"
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-D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
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-D "TEST_ARGS:STRING=--enable-error-stack;${hl_name}.h5"
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-D "TEST_FOLDER=${HDF5_HL_TEST_BINARY_DIR}"
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-D "TEST_OUTPUT=h5dump-${hl_name}.out"
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-D "TEST_EXPECT=${resultcode}"
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-D "TEST_REFERENCE=testfiles/${hl_name}.h5.ddl"
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-P "${HDF_RESOURCES_DIR}/runTest.cmake"
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)
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set_tests_properties (H5DUMP-HL_${hl_name} PROPERTIES
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DEPENDS HL_${hl_name}
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)
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set (current_test_name "H5DUMP-HL_${hl_name}")
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endif ()
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endif ()
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set_tests_properties (${current_test_name} PROPERTIES
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FIXTURES_REQUIRED clear_test_hl
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ENVIRONMENT "srcdir=${HDF5_HL_TEST_BINARY_DIR}"
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WORKING_DIRECTORY ${HDF5_HL_TEST_BINARY_DIR}
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)
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if ("HL_${hl_name}" MATCHES "${HDF5_DISABLE_TESTS_REGEX}")
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set_tests_properties (HL_${hl_name} PROPERTIES DISABLED true)
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endif ()
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endmacro ()
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HL_add_test (test_lite )
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HL_add_test (test_image)
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HL_add_test (test_file_image)
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HL_add_test (test_table)
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HL_add_test (test_ds)
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HL_add_test (test_packet)
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HL_add_test (test_ld)
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HL_add_test (test_dset_append)
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HL_add_test (test_h5do_compat)
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