mirror of
https://github.com/HDFGroup/hdf5.git
synced 2026-09-25 04:09:44 +03:00
* Fix MPI Fortran configuration for HDF5Examples (#6206) When building Fortran parallel examples without MPI wrappers, the compiler couldn't find mpi.mod because MPI_Fortran_INCLUDE_DIRS was not populated. This occurred because find_package(MPI) was only called for C, not Fortran. Added enable_language(Fortran) and find_package(MPI REQUIRED COMPONENTS Fortran) to properly configure MPI for Fortran examples, ensuring MPI include directories and libraries are correctly set. * Adds RFCs to the RFC table (#6190) * Added two RFCs to the RFC table "Adding support for digitally signed plugins to HDF5" " Write-Ahead log" * Updated to use the ACM link * Add HDF5 2.0.0 Library Migration Guide (#6183) * Add HDF5 2.0.0 Library Migration Guide * Revise HDF5 migration guide for version 2.0.0 Use 2.0.0 consistently. * Clarify API changes in HDF5 2.0.0 Migration Guide * Fixes the "multiple @param documentation sections" doxygen warnings (#6195) Addresses the "multiple @ param documentation sections" warnings are caused by the interaction of three things: 1. MACRO_EXPANSION = YES with EXPAND_ONLY_PREDEF = NO in Doxyfile.in 2. Versioned API macros in H5version.h like: \def documentation in APIVersions.dox like: 3. \def H5Tarray_create \api_vers_2{H5Tarray_create,H5Tarray_create1,H5Tarray_create2} Because Doxygen expands all macros, it sees H5Tarray_create as an alias for H5Tarray_create1. It then associates documentation from both the \def block (for the macro) and the function's own doc block (with \param entries) with the same function — resulting in "multiple @ param documentation sections." * Update Doxygen version from 1.16.0 to 1.16.1 Use Doxygen 1.16.1 for all platforms. This version includes the latest bug fixes and improvements while maintaining compatibility with our documentation format. * Fix Windows Doxygen installation for version 1.16.1 Handle different Windows binary naming conventions across Doxygen versions: - 1.16.1 uses: doxygen-VERSION.windows.x64.bin.zip - 1.16.0 uses: doxygen-VERSION.x64.bin.zip Try the newer naming convention first, then fall back to the older one if the download fails. This ensures compatibility across versions. * Use ssciwr/doxygen-install in setup-doxygen action Replace direct installation of official Doxygen binaries with ssciwr/doxygen-install action. This avoids Java documentation parsing errors that occur with official binaries but not with distribution builds. The setup-doxygen action now serves as a thin wrapper around ssciwr/doxygen-install@f13be16c83 (v1), using commit hash for security and reproducibility. * Remove redundant version specification from workflows The setup-doxygen action already has a default version (1.16.1), so explicit version specification in workflows is unnecessary. This follows DRY principles and makes version updates simpler. * Updates to #6205 (#6208) * Fix MPI Fortran configuration for HDF5Examples (#6205) When building Fortran parallel examples standalone without MPI wrappers, the compiler cannot find mpi.mod because MPI_Fortran_INCLUDE_DIRS is not populated. * Use MPI::MPI_Fortran imported target instead of raw MPI variables Replace manual MPI_Fortran_LIBRARIES, MPI_Fortran_LINK_FLAGS, and MPI_Fortran_INCLUDE_DIRS usage with the MPI::MPI_Fortran imported target, which transitively carries all include dirs, compile flags, and link flags. This eliminates the CMAKE_Fortran_EXE_LINKER_FLAGS hack and the manual target_include_directories in H5PAR. * Update nvhpc version to 26.1 with CUDA version 13.1. (#6213) # branches: [develop] * Inherit Debug C build flags in Developer build mode (#6182) * Bump the github-actions group across 1 directory with 11 updates (#6215) * Bump the github-actions group across 1 directory with 11 updates Bumps the github-actions group with 11 updates in the / directory: | Package | From | To | | --- | --- | --- | | [actions/cache](https://github.com/actions/cache) | `5.0.1` | `5.0.3` | | [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.2.1` | `4.2.3` | | [softwareforgood/check-artifact-v4-existence](https://github.com/softwareforgood/check-artifact-v4-existence) | `0.3.0` | `0.4.1` | | [github/codeql-action](https://github.com/github/codeql-action) | `3.31.9` | `4.32.2` | | [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `0.5.11` | `1.1.0` | | [cygwin/cygwin-install-action](https://github.com/cygwin/cygwin-install-action) | `7d2dc1e241644c3318bed9ec74115d1929baa681` | `2566376092c4e280f21131be027af3f5bb2420a4` | | [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) | `5.1.1` | `6.0.0` | | [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.3.4` | `1.4.2` | | [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `1.3.1` | `1.3.5` | | [mpi4py/setup-mpi](https://github.com/mpi4py/setup-mpi) | `1.4.1` | `1.4.2` | | [actions/setup-python](https://github.com/actions/setup-python) | `6.1.0` | `6.2.0` | vmactions/openbsd-vm@d6c29ce1b4 (`1.3.5`) failed to run ssh on the github runner. 271a1ba62300483cfc58345ff9f425f1349a2cab for v1.3.4 was used instead. * Fix issue with some Subfiling VFD test files not getting deleted (#6212) * CMake: Fix Fortran cross-compilation support Refactor the cross-compilation infrastructure to rely on the standard CMAKE_CROSSCOMPILING_EMULATOR variable instead of the custom CROSSCOMPILING_PATH environment hack. Key changes: - Removed `ENVIRONMENT "${CROSSCOMPILING_PATH}"` from all test definitions. - Updated custom commands (e.g., H5match_types, H5_gen) to invoke the emulator explicitly when cross-compiling. - Updated ConfigureChecks.cmake and HDF5UseFortran.cmake to enable `try_run` checks when an emulator is defined. - Added config/toolchain/mingw-w64-x86-64-wine.sh wrapper to automatically locate MinGW runtime libraries (like libgfortran) for Wine execution. - Cleaned up toolchain files to remove hardcoded emulator paths, deferring configuration to the build environment. * Add Doxygen setup that results in missing Doygen documentation. (#6217) * Added setup-doxygen action in ctest.yml Ubuntu gcc workflow. * Also added actions/checkout for setup-doxygen. * Fixes link checker failure (#6219) Removed https:// as a workaround to avoid error by the link checker. * Remove force-setting of ZLIB_USE_EXTERNAL / SZIP_USE_EXTERNAL (#6222) Removes the force-setting of ZLIB_USE_EXTERNAL and SZIP_USE_EXTERNAL to ON when HDF5_ALLOW_EXTERNAL_SUPPORT is GIT or TGZ so that zlib and szip can be independently built from the system or externally as desired * Truncate Subfiling VFD's stub file when truncating subfiles (#6210) Ensure that the Subfiling VFD's stub file gets truncated when subfiles are being truncated to avoid a potentially unreadable file when the EOF doesn't match the stored EOF value Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add CMake function to extract pkg-config info from libraries (#6220) * Consistent extension for C++ (#6214) Except for this file, all use cpp instead of cxx. No obvious reason why the same file types should have different extensions. * Enable Windows ARM64 CTest CI for release binaries (#6177) * ci: add Windows ARM64 MSVC CTest job * ci: add MSYS2 clangarm64 build on Windows ARM64 * cmake: add MSVC ARM64 presets for Windows * zlib: fix MSVC static library flags for ARM64 builds * Renamed .hxx file to .h and updated the #include for it. * Committing clang-format changes --------- Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: Gerd Heber <gheber@hdfgroup.org> Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Julien Schueller <schueller@phimeca.com> Co-authored-by: Martin Diehl <mail@martin-diehl.net> Co-authored-by: Harish RS <harish.rajaselvan@multicorewareinc.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
505 lines
22 KiB
CMake
505 lines
22 KiB
CMake
#
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# Copyright by The HDF Group.
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# All rights reserved.
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#
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# This file is part of HDF5. The full HDF5 copyright notice, including
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# terms governing use, modification, and redistribution, is contained in
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# the LICENSE file, which can be found at the root of the source code
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# distribution tree, or in https://www.hdfgroup.org/licenses.
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# If you do not have access to either file, you may request a copy from
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# help@hdfgroup.org.
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#
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#
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# This file provides functions for HDF5 specific Fortran support.
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#
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# -----------------------------------------------------------------------------
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# HDF5UseFortran.cmake
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#
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# This CMake module provides functions and macros for HDF5-specific Fortran
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# support. It performs feature detection and configuration for Fortran compilers
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# and types, and collects information about available Fortran kinds, sizes, and
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# compatibility with C types. The results are used to generate configuration
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# headers and control conditional compilation for the HDF5 Fortran interface.
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#
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# Main features:
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# - Includes general Fortran support macros and Fortran function checks
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# - Defines FORTRAN_RUN macro to compile and run Fortran test programs
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# - Detects support for C_LONG_DOUBLE, C_BOOL, ISO_FORTRAN_ENV, and allocatable character
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# - Determines available INTEGER, REAL, and LOGICAL kinds and their sizes
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# - Handles Fortran/C type compatibility and precision checks
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# - Finds LOGICAL kind for MPI if parallel and testing are enabled
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# - Sets variables for use in HDF5 Fortran configuration headers
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# -----------------------------------------------------------------------------
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include (${HDF_CONFIG_DIR}/HDFUseFortran.cmake)
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include (CheckFortranFunctionExists)
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# Force lowercase Fortran module file names
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if (CMAKE_Fortran_COMPILER_ID STREQUAL "Cray")
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set (CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} -ef")
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endif ()
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set (RUN_OUTPUT_PATH_DEFAULT ${CMAKE_BINARY_DIR})
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# The provided CMake Fortran macros don't provide a general compile/run function
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# so this one is used.
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#-----------------------------------------------------------------------------
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macro (FORTRAN_RUN FUNCTION_NAME SOURCE_CODE RUN_RESULT_VAR1 COMPILE_RESULT_VAR1 RETURN_VAR RETURN_OUTPUT_VAR)
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message (VERBOSE "Detecting Fortran ${FUNCTION_NAME}")
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file (WRITE
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${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeTmp/testFortranCompiler1.f90
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"${SOURCE_CODE}"
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)
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if (${FUNCTION_NAME} STREQUAL "SIZEOF NATIVE KINDs")
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set (TMP_CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS}")
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else ()
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set (TMP_CMAKE_Fortran_FLAGS "")
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endif ()
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try_run (RUN_RESULT_VAR COMPILE_RESULT_VAR
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SOURCES ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeTmp/testFortranCompiler1.f90
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CMAKE_FLAGS "${TMP_CMAKE_Fortran_FLAGS}"
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LINK_LIBRARIES "${HDF5_REQUIRED_LIBRARIES}"
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RUN_OUTPUT_STDOUT_VARIABLE OUTPUT_VAR
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)
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set (${RETURN_OUTPUT_VAR} ${OUTPUT_VAR})
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if (${COMPILE_RESULT_VAR})
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set (${RETURN_VAR} ${RUN_RESULT_VAR})
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if (${RUN_RESULT_VAR} MATCHES 0)
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message (VERBOSE "Testing Fortran ${FUNCTION_NAME} - OK")
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file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log
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"Determining if the Fortran ${FUNCTION_NAME} exists passed\n"
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)
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else ()
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message (VERBOSE "Testing Fortran ${FUNCTION_NAME} - Fail")
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file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log
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"Determining if the Fortran ${FUNCTION_NAME} exists failed: ${RUN_RESULT_VAR}\n"
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)
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endif ()
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else ()
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message (VERBOSE "Compiling Fortran ${FUNCTION_NAME} - Fail")
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file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log
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"Determining if the Fortran ${FUNCTION_NAME} compiles failed: ${COMPILE_RESULT_VAR}\n"
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)
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set (${RETURN_VAR} ${COMPILE_RESULT_VAR})
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endif ()
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endmacro ()
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#-----------------------------------------------------------------------------
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# Check to see C_LONG_DOUBLE is available
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READ_SOURCE ("PROGRAM PROG_FC_HAVE_C_LONG_DOUBLE" "END PROGRAM PROG_FC_HAVE_C_LONG_DOUBLE" SOURCE_CODE)
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check_fortran_source_compiles (${SOURCE_CODE} FORTRAN_HAVE_C_LONG_DOUBLE SRC_EXT f90)
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if (${FORTRAN_HAVE_C_LONG_DOUBLE})
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set (${HDF_PREFIX}_FORTRAN_HAVE_C_LONG_DOUBLE 1)
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else ()
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set (${HDF_PREFIX}_FORTRAN_HAVE_C_LONG_DOUBLE 0)
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endif ()
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# Check to see C_LONG_DOUBLE is different from C_DOUBLE
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READ_SOURCE("MODULE type_mod" "END PROGRAM PROG_FC_C_LONG_DOUBLE_EQ_C_DOUBLE" SOURCE_CODE)
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check_fortran_source_compiles (${SOURCE_CODE} FORTRAN_C_LONG_DOUBLE_IS_UNIQUE SRC_EXT f90)
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if (${FORTRAN_C_LONG_DOUBLE_IS_UNIQUE})
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set (${HDF_PREFIX}_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE 1)
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else ()
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set (${HDF_PREFIX}_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE 0)
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endif ()
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# Check to see C_BOOL is different from default LOGICAL
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READ_SOURCE("MODULE l_type_mod" "END PROGRAM PROG_FC_C_BOOL_EQ_LOGICAL" SOURCE_CODE)
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check_fortran_source_compiles (${SOURCE_CODE} FORTRAN_C_BOOL_IS_UNIQUE SRC_EXT f90)
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if (${FORTRAN_C_BOOL_IS_UNIQUE})
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set (${HDF_PREFIX}_FORTRAN_C_BOOL_IS_UNIQUE 1)
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else ()
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set (${HDF_PREFIX}_FORTRAN_C_BOOL_IS_UNIQUE 0)
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endif ()
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# Check if the fortran compiler supports the intrinsic module "ISO_FORTRAN_ENV" (F08)
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READ_SOURCE("PROGRAM PROG_FC_ISO_FORTRAN_ENV" "END PROGRAM PROG_FC_ISO_FORTRAN_ENV" SOURCE_CODE)
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check_fortran_source_compiles (${SOURCE_CODE} HAVE_ISO_FORTRAN_ENV SRC_EXT f90)
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if (${HAVE_ISO_FORTRAN_ENV})
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set (${HDF_PREFIX}_HAVE_ISO_FORTRAN_ENV 1)
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else ()
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set (${HDF_PREFIX}_HAVE_ISO_FORTRAN_ENV 0)
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endif ()
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## Set the sizeof function for use later in the fortran tests
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if (${HDF_PREFIX}_FORTRAN_HAVE_STORAGE_SIZE)
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set (FC_SIZEOF_A "STORAGE_SIZE(a, c_size_t)/STORAGE_SIZE(c_char_'a',c_size_t)")
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set (FC_SIZEOF_B "STORAGE_SIZE(b, c_size_t)/STORAGE_SIZE(c_char_'a',c_size_t)")
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set (FC_SIZEOF_C "STORAGE_SIZE(c, c_size_t)/STORAGE_SIZE(c_char_'a',c_size_t)")
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elseif (${HDF_PREFIX}_FORTRAN_HAVE_C_SIZEOF)
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set (FC_SIZEOF_A "SIZEOF(a)")
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set (FC_SIZEOF_B "SIZEOF(b)")
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set (FC_SIZEOF_C "SIZEOF(c)")
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else ()
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message (FATAL_ERROR "Fortran compiler requires either intrinsic functions SIZEOF or STORAGE_SIZE")
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endif ()
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# Check to see of Fortran supports allocatable character
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READ_SOURCE("PROGRAM PROG_CHAR_ALLOC" "END PROGRAM PROG_CHAR_ALLOC" SOURCE_CODE)
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check_fortran_source_compiles (${SOURCE_CODE} FORTRAN_CHAR_ALLOC SRC_EXT f90)
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if (${FORTRAN_CHAR_ALLOC})
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set (${HDF_PREFIX}_FORTRAN_HAVE_CHAR_ALLOC 1)
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else ()
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set (${HDF_PREFIX}_FORTRAN_HAVE_CHAR_ALLOC 0)
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endif ()
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#-----------------------------------------------------------------------------
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# Determine the available KINDs for REALs and INTEGERs
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#-----------------------------------------------------------------------------
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if (NOT CMAKE_CROSSCOMPILING OR (CMAKE_CROSSCOMPILING AND CMAKE_CROSSCOMPILING_EMULATOR))
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if (${HAVE_ISO_FORTRAN_ENV})
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READ_SOURCE ("PROGRAM FC08_AVAIL_KINDS" "END PROGRAM FC08_AVAIL_KINDS" SOURCE_CODE)
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else ()
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READ_SOURCE ("PROGRAM FC_AVAIL_KINDS" "END PROGRAM FC_AVAIL_KINDS" SOURCE_CODE)
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endif ()
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FORTRAN_RUN ("REAL and INTEGER KINDs"
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"${SOURCE_CODE}"
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XX
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YY
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FC_AVAIL_KINDS_RESULT
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PROG_OUTPUT
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)
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# dnl The output from the above program will be:
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# dnl -- LINE 1 -- valid integer kinds (comma separated list)
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# dnl -- LINE 2 -- valid real kinds (comma separated list)
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# dnl -- LINE 3 -- max decimal precision for reals
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# dnl -- LINE 4 -- number of valid integer kinds
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# dnl -- LINE 5 -- number of valid real kinds
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# dnl -- LINE 6 -- number of valid logical kinds
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# dnl -- LINE 7 -- valid logical kinds (comma separated list)
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#
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# Convert the string to a list of strings by replacing the carriage return with a semicolon
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string (REGEX REPLACE "[\r\n]+" ";" PROG_OUTPUT "${PROG_OUTPUT}")
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list (GET PROG_OUTPUT 0 pac_validIntKinds)
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list (GET PROG_OUTPUT 1 pac_validRealKinds)
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list (GET PROG_OUTPUT 2 pac_fc_max_real_precision)
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# If the lists are empty then something went wrong.
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if (NOT pac_validIntKinds)
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message (FATAL_ERROR "Failed to find available INTEGER KINDs for Fortran")
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endif ()
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if (NOT pac_validRealKinds)
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message (FATAL_ERROR "Failed to find available REAL KINDs for Fortran")
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endif ()
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if (NOT pac_fc_max_real_precision)
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message (FATAL_ERROR "No output from Fortran decimal precision program")
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endif ()
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set (${HDF_PREFIX}_PAC_FC_MAX_REAL_PRECISION ${pac_fc_max_real_precision} CACHE INTERNAL "Maximum decimal precision for REALs in Fortran")
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set (PAC_FC_ALL_INTEGER_KINDS "\{${pac_validIntKinds}\}" CACHE INTERNAL "Find available INTEGER KINDs for Fortran")
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set (PAC_FC_ALL_REAL_KINDS "\{${pac_validRealKinds}\}" CACHE INTERNAL "Find available REAL KINDs for Fortran")
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list (GET PROG_OUTPUT 3 NUM_IKIND)
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list (GET PROG_OUTPUT 4 NUM_RKIND)
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set (PAC_FORTRAN_NUM_INTEGER_KINDS "${NUM_IKIND}" CACHE INTERNAL "Number of valid integer kinds for Fortran")
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set (PAC_FORTRAN_NUM_REAL_KINDS "${NUM_RKIND}" CACHE INTERNAL "Number of valid real kinds for Fortran")
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set (${HDF_PREFIX}_H5CONFIG_F_NUM_IKIND "INTEGER, PARAMETER :: num_ikinds = ${NUM_IKIND}")
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set (${HDF_PREFIX}_H5CONFIG_F_IKIND "INTEGER, DIMENSION(1:num_ikinds) :: ikind = (/${pac_validIntKinds}/)")
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if (${HAVE_ISO_FORTRAN_ENV})
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list (GET PROG_OUTPUT 5 NUM_LKIND)
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set (PAC_FORTRAN_NUM_LOGICAL_KINDS "${NUM_LKIND}" CACHE INTERNAL "Find available LOGICAL KINDs for Fortran")
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list (GET PROG_OUTPUT 6 pac_validLogicalKinds)
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# If the list is empty then something went wrong.
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if (NOT pac_validLogicalKinds)
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message (FATAL_ERROR "Failed to find available LOGICAL KINDs for Fortran")
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endif ()
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set (PAC_FC_ALL_LOGICAL_KINDS "\{${pac_validLogicalKinds}\}" CACHE INTERNAL "LOGICAL KINDS FOUND for Fortran")
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message (STATUS "....LOGICAL KINDS FOUND ${PAC_FC_ALL_LOGICAL_KINDS}")
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endif ()
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else ()
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# Use the default if there's no cache variable and cross-compiling
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message (VERBOSE "Find available INTEGER KINDs for Fortran... yes (cross-compile gfortran default)")
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set (PAC_FC_ALL_INTEGER_KINDS "\{1,2,4,8,16\}" CACHE INTERNAL "Find available INTEGER KINDs for Fortran")
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set (PAC_FC_ALL_REAL_KINDS "\{4,8,10,16\}" CACHE INTERNAL "Find available REAL KINDs for Fortran")
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set (${HDF_PREFIX}_PAC_FC_MAX_REAL_PRECISION 33 CACHE INTERNAL "Maximum decimal precision for REALs in Fortran")
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set (PAC_FORTRAN_NUM_INTEGER_KINDS "5" CACHE INTERNAL "Number of valid integer kinds for Fortran")
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set (PAC_FORTRAN_NUM_REAL_KINDS "4" CACHE INTERNAL "Number of valid real kinds for Fortran")
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set (${HDF_PREFIX}_H5CONFIG_F_NUM_IKIND "INTEGER, PARAMETER :: num_ikinds = 5")
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set (${HDF_PREFIX}_H5CONFIG_F_IKIND "INTEGER, DIMENSION(1:num_ikinds) :: ikind = (/1,2,4,8,16/)")
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if (${HAVE_ISO_FORTRAN_ENV})
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set (PAC_FORTRAN_NUM_LOGICAL_KINDS "5" CACHE INTERNAL "Find available LOGICAL KINDs for Fortran")
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set (PAC_FC_ALL_LOGICAL_KINDS "\{1,2,4,8,16\}" CACHE INTERNAL "LOGICAL KINDS FOUND for Fortran")
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endif ()
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endif ()
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message (STATUS "....NUMBER OF INTEGER KINDS FOUND ${PAC_FORTRAN_NUM_INTEGER_KINDS}")
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message (STATUS "....REAL KINDS FOUND ${PAC_FC_ALL_REAL_KINDS}")
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message (STATUS "....INTEGER KINDS FOUND ${PAC_FC_ALL_INTEGER_KINDS}")
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message (STATUS "....MAX DECIMAL PRECISION ${${HDF_PREFIX}_PAC_FC_MAX_REAL_PRECISION}")
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if (${HAVE_ISO_FORTRAN_ENV})
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# ********************
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# LOGICAL KIND FOR MPI
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# ********************
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if (HDF5_ENABLE_PARALLEL AND BUILD_TESTING)
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string (REGEX REPLACE "," ";" VAR "${PAC_FC_ALL_LOGICAL_KINDS}")
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set (CMAKE_REQUIRED_QUIET TRUE)
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set (save_CMAKE_Fortran_FLAGS ${CMAKE_Fortran_FLAGS})
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if (CMAKE_Fortran_COMPILER_ID MATCHES "Intel")
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set (CMAKE_Fortran_FLAGS "-warn error")
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endif ()
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foreach (KIND ${VAR})
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unset (MPI_LOGICAL_KIND CACHE)
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set (PROG_SRC
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"
|
|
PROGRAM main
|
|
USE MPI
|
|
IMPLICIT NONE
|
|
LOGICAL(KIND=${KIND}) :: flag
|
|
INTEGER(KIND=MPI_INTEGER_KIND) :: info_ret, mpierror
|
|
CHARACTER(LEN=3) :: info_val
|
|
CALL mpi_info_get(info_ret,\"foo\", 3_MPI_INTEGER_KIND, info_val, flag, mpierror)
|
|
END
|
|
"
|
|
)
|
|
check_fortran_source_compiles (${PROG_SRC} MPI_LOGICAL_KIND SRC_EXT f90)
|
|
|
|
if (MPI_LOGICAL_KIND)
|
|
set (${HDF_PREFIX}_MPI_LOGICAL_KIND ${KIND})
|
|
message (STATUS "....FORTRAN LOGICAL KIND for MPI is ${KIND}")
|
|
endif ()
|
|
endforeach ()
|
|
if (${HDF_PREFIX}_MPI_LOGICAL_KIND STREQUAL "")
|
|
message (FATAL_ERROR "Failed to determine LOGICAL KIND for MPI")
|
|
endif ()
|
|
set (CMAKE_REQUIRED_QUIET FALSE)
|
|
set (CMAKE_Fortran_FLAGS ${save_CMAKE_Fortran_FLAGS})
|
|
endif ()
|
|
endif ()
|
|
|
|
#-----------------------------------------------------------------------------
|
|
# Determine the available KINDs for REALs and INTEGERs
|
|
#-----------------------------------------------------------------------------
|
|
# **********
|
|
# INTEGERS
|
|
# **********
|
|
if (NOT CMAKE_CROSSCOMPILING OR (CMAKE_CROSSCOMPILING AND CMAKE_CROSSCOMPILING_EMULATOR))
|
|
string (REGEX REPLACE "," ";" VAR "${pac_validIntKinds}")
|
|
|
|
foreach (KIND ${VAR})
|
|
set (PROG_SRC_${KIND}
|
|
"
|
|
PROGRAM main
|
|
USE ISO_C_BINDING
|
|
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : stdout=>OUTPUT_UNIT
|
|
IMPLICIT NONE
|
|
INTEGER (KIND=${KIND}) a
|
|
WRITE(stdout,'(I0)') ${FC_SIZEOF_A}
|
|
END
|
|
"
|
|
)
|
|
FORTRAN_RUN("INTEGER KIND SIZEOF" ${PROG_SRC_${KIND}} XX YY VALIDINTKINDS_RESULT_${KIND} PROG_OUTPUT1)
|
|
string (REGEX REPLACE "[\r\n]+" "" PROG_OUTPUT1 "${PROG_OUTPUT1}")
|
|
set (pack_int_sizeof "${pack_int_sizeof} ${PROG_OUTPUT1},")
|
|
endforeach ()
|
|
|
|
if (pack_int_sizeof STREQUAL "")
|
|
message (FATAL_ERROR "Failed to find available INTEGER KINDs for Fortran")
|
|
endif ()
|
|
|
|
string (STRIP ${pack_int_sizeof} pack_int_sizeof)
|
|
|
|
#Remove trailing comma
|
|
string (REGEX REPLACE ",$" "" pack_int_sizeof "${pack_int_sizeof}")
|
|
#Remove spaces
|
|
string (REGEX REPLACE " " "" pack_int_sizeof "${pack_int_sizeof}")
|
|
|
|
set (PAC_FC_ALL_INTEGER_KINDS_SIZEOF "\{${pack_int_sizeof}\}")
|
|
else ()
|
|
# Use the default if there's no cache variable and cross-compiling
|
|
message (VERBOSE "Find available INTEGER KINDs for Fortran... yes (cross-compile gfortran default)")
|
|
set (PAC_FC_ALL_INTEGER_KINDS_SIZEOF "\{1,2,4,8,16\}" CACHE INTERNAL "Find available INTEGER KINDs for Fortran")
|
|
endif ()
|
|
|
|
if (PAC_FC_ALL_INTEGER_KINDS_SIZEOF STREQUAL "")
|
|
message (FATAL_ERROR "Failed to find available INTEGER KINDs for Fortran")
|
|
endif ()
|
|
|
|
message (VERBOSE "....FOUND SIZEOF for INTEGER KINDs ${PAC_FC_ALL_INTEGER_KINDS_SIZEOF}")
|
|
# **********
|
|
# REALS
|
|
# **********
|
|
if (NOT CMAKE_CROSSCOMPILING OR (CMAKE_CROSSCOMPILING AND CMAKE_CROSSCOMPILING_EMULATOR))
|
|
string (REGEX REPLACE "," ";" VAR "${pac_validRealKinds}")
|
|
|
|
#find the maximum kind of the real
|
|
list (LENGTH VAR LEN_VAR)
|
|
math (EXPR _LEN "${LEN_VAR}-1")
|
|
list (GET VAR ${_LEN} max_real_fortran_kind)
|
|
|
|
foreach (KIND ${VAR} )
|
|
set (PROG_SRC2_${KIND}
|
|
"
|
|
PROGRAM main
|
|
USE ISO_C_BINDING
|
|
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : stdout=>OUTPUT_UNIT
|
|
IMPLICIT NONE
|
|
REAL (KIND=${KIND}) a
|
|
WRITE(stdout,'(I0)') ${FC_SIZEOF_A}
|
|
END
|
|
"
|
|
)
|
|
FORTRAN_RUN ("REAL KIND SIZEOF" ${PROG_SRC2_${KIND}} XX YY VALIDREALKINDS_RESULT_${KIND} PROG_OUTPUT2)
|
|
string (REGEX REPLACE "[\r\n]+" "" PROG_OUTPUT2 "${PROG_OUTPUT2}")
|
|
set (pack_real_sizeof "${pack_real_sizeof} ${PROG_OUTPUT2},")
|
|
endforeach ()
|
|
|
|
if (pack_real_sizeof STREQUAL "")
|
|
message (FATAL_ERROR "Failed to find available REAL KINDs for Fortran")
|
|
endif ()
|
|
|
|
string(STRIP ${pack_real_sizeof} pack_real_sizeof)
|
|
|
|
#Remove trailing comma
|
|
string (REGEX REPLACE ",$" "" pack_real_sizeof "${pack_real_sizeof}")
|
|
#Remove spaces
|
|
string (REGEX REPLACE " " "" pack_real_sizeof "${pack_real_sizeof}")
|
|
|
|
set (PAC_FC_ALL_REAL_KINDS_SIZEOF "\{${pack_real_sizeof}\}")
|
|
else ()
|
|
# Use the default if there's no cache variable and cross-compiling
|
|
message (VERBOSE "Find available REAL KINDs for Fortran... yes (cross-compile gfortran default)")
|
|
set (PAC_FC_ALL_REAL_KINDS_SIZEOF "\{4,8,16,16\}" CACHE INTERNAL "Find available REAL KINDs for Fortran")
|
|
endif ()
|
|
|
|
if (PAC_FC_ALL_REAL_KINDS_SIZEOF STREQUAL "")
|
|
message (FATAL_ERROR "Failed to find available REAL KINDs for Fortran")
|
|
endif ()
|
|
|
|
set (${HDF_PREFIX}_H5CONFIG_F_RKIND_SIZEOF "INTEGER, DIMENSION(1:num_rkinds) :: rkind_sizeof = (/${PAC_FC_ALL_REAL_KINDS_SIZEOF}/)")
|
|
message (STATUS "....FOUND SIZEOF for REAL KINDs ${PAC_FC_ALL_REAL_KINDS_SIZEOF}")
|
|
|
|
#find the maximum kind of the real
|
|
string (REGEX REPLACE "," ";" VAR "${PAC_FC_ALL_REAL_KINDS_SIZEOF}")
|
|
list (LENGTH VAR LEN_VAR)
|
|
math (EXPR _LEN "${LEN_VAR}-1")
|
|
list (GET VAR ${_LEN} max_real_fortran_sizeof)
|
|
|
|
#-----------------------------------------------------------------------------
|
|
# Find sizeof of native kinds
|
|
#-----------------------------------------------------------------------------
|
|
if (NOT CMAKE_CROSSCOMPILING OR (CMAKE_CROSSCOMPILING AND CMAKE_CROSSCOMPILING_EMULATOR))
|
|
set (PROG_SRC3
|
|
"
|
|
PROGRAM main
|
|
USE ISO_C_BINDING
|
|
USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : stdout=>OUTPUT_UNIT
|
|
IMPLICIT NONE
|
|
INTEGER a
|
|
REAL b
|
|
DOUBLE PRECISION c
|
|
WRITE(stdout,*) ${FC_SIZEOF_A}
|
|
WRITE(stdout,*) kind(a)
|
|
WRITE(stdout,*) ${FC_SIZEOF_B}
|
|
WRITE(stdout,*) kind(b)
|
|
WRITE(stdout,*) ${FC_SIZEOF_C}
|
|
WRITE(stdout,*) kind(c)
|
|
END
|
|
"
|
|
)
|
|
FORTRAN_RUN ("SIZEOF NATIVE KINDs" ${PROG_SRC3} XX YY PAC_SIZEOF_NATIVE_KINDS_RESULT PROG_OUTPUT3)
|
|
# The output from the above program will be:
|
|
# -- LINE 1 -- sizeof INTEGER
|
|
# -- LINE 2 -- kind of INTEGER
|
|
# -- LINE 3 -- sizeof REAL
|
|
# -- LINE 4 -- kind of REAL
|
|
# -- LINE 5 -- sizeof DOUBLE PRECISION
|
|
# -- LINE 6 -- kind of DOUBLE PRECISION
|
|
#
|
|
# Convert the string to a list of strings by replacing the carriage return with a semicolon
|
|
string (REGEX REPLACE "[\r\n]+" ";" PROG_OUTPUT3 "${PROG_OUTPUT3}")
|
|
|
|
list (GET PROG_OUTPUT3 0 PAC_FORTRAN_NATIVE_INTEGER_SIZEOF)
|
|
list (GET PROG_OUTPUT3 1 PAC_FORTRAN_NATIVE_INTEGER_KIND)
|
|
list (GET PROG_OUTPUT3 2 PAC_FORTRAN_NATIVE_REAL_SIZEOF)
|
|
list (GET PROG_OUTPUT3 3 PAC_FORTRAN_NATIVE_REAL_KIND)
|
|
list (GET PROG_OUTPUT3 4 PAC_FORTRAN_NATIVE_DOUBLE_SIZEOF)
|
|
list (GET PROG_OUTPUT3 5 PAC_FORTRAN_NATIVE_DOUBLE_KIND)
|
|
else ()
|
|
# Use the default if there's no cache variable and cross-compiling
|
|
message (VERBOSE "Find sizeof of native kinds sizeof INTEGER... yes (cross-compile gfortran default)")
|
|
set (PAC_FORTRAN_NATIVE_INTEGER_SIZEOF 4 CACHE INTERNAL "Find sizeof of native kinds sizeof INTEGER")
|
|
message (VERBOSE "Find sizeof of native kinds kind of INTEGER... yes (cross-compile gfortran default)")
|
|
set (PAC_FORTRAN_NATIVE_INTEGER_KIND 4 CACHE INTERNAL "Find sizeof of native kinds kind of INTEGER")
|
|
message (VERBOSE "Find sizeof of native kinds sizeof REAL... yes (cross-compile gfortran default)")
|
|
set (PAC_FORTRAN_NATIVE_REAL_SIZEOF 4 CACHE INTERNAL "Find sizeof of native kinds sizeof REAL")
|
|
message (VERBOSE "Find sizeof of native kinds kind of REAL... yes (cross-compile gfortran default)")
|
|
set (PAC_FORTRAN_NATIVE_REAL_KIND 4 CACHE INTERNAL "Find sizeof of native kinds kind of REAL")
|
|
message (VERBOSE "Find sizeof of native kinds sizeof DOUBLE PRECISION... yes (cross-compile gfortran default)")
|
|
set (PAC_FORTRAN_NATIVE_DOUBLE_SIZEOF 8 CACHE INTERNAL "Find sizeof of native kinds sizeof DOUBLE PRECISION")
|
|
message (VERBOSE "Find sizeof of native kinds kind of DOUBLE PRECISION... yes (cross-compile gfortran default)")
|
|
set (PAC_FORTRAN_NATIVE_DOUBLE_KIND 8 CACHE INTERNAL "Find sizeof of native kinds kind of DOUBLE PRECISION")
|
|
endif ()
|
|
|
|
if (NOT PAC_FORTRAN_NATIVE_INTEGER_SIZEOF)
|
|
message (FATAL_ERROR "Failed to find SIZEOF NATIVE INTEGER KINDs for Fortran")
|
|
endif ()
|
|
if (NOT PAC_FORTRAN_NATIVE_REAL_SIZEOF)
|
|
message (FATAL_ERROR "Failed to find SIZEOF NATIVE REAL KINDs for Fortran")
|
|
endif ()
|
|
if (NOT PAC_FORTRAN_NATIVE_DOUBLE_SIZEOF)
|
|
message (FATAL_ERROR "Failed to find SIZEOF NATIVE DOUBLE KINDs for Fortran")
|
|
endif ()
|
|
if (NOT PAC_FORTRAN_NATIVE_INTEGER_KIND)
|
|
message (FATAL_ERROR "Failed to find KIND of NATIVE INTEGER for Fortran")
|
|
endif ()
|
|
if (NOT PAC_FORTRAN_NATIVE_REAL_KIND)
|
|
message (FATAL_ERROR "Failed to find KIND of NATIVE REAL for Fortran")
|
|
endif ()
|
|
if (NOT PAC_FORTRAN_NATIVE_DOUBLE_KIND)
|
|
message (FATAL_ERROR "Failed to find KIND of NATIVE DOUBLE for Fortran")
|
|
endif ()
|
|
|
|
set (${HDF_PREFIX}_FORTRAN_SIZEOF_LONG_DOUBLE ${${HDF_PREFIX}_SIZEOF_LONG_DOUBLE})
|
|
|
|
# Remove the invalid kind from the list
|
|
if (${${HDF_PREFIX}_HAVE_FLOAT128})
|
|
if (NOT(16 EQUAL ${max_real_fortran_sizeof}) AND NOT(${${HDF_PREFIX}_FORTRAN_SIZEOF_LONG_DOUBLE} EQUAL ${max_real_fortran_sizeof})
|
|
# Account for the fact that the C compiler can have 16-byte __float128 and the fortran compiler only has 8-byte doubles,
|
|
# so we don't want to remove the 8-byte fortran doubles.
|
|
AND NOT(${PAC_FORTRAN_NATIVE_DOUBLE_SIZEOF} EQUAL ${max_real_fortran_sizeof}))
|
|
message (WARNING "
|
|
Fortran REAL(KIND=${max_real_fortran_kind}) is $max_real_fortran_sizeof Bytes, but no corresponding C float type exists of that size
|
|
!!! Fortran interfaces will not be generated for REAL(KIND=${max_real_fortran_kind}) !!!")
|
|
string (REGEX REPLACE ",[0-9]+}" "}" PAC_FC_ALL_REAL_KINDS ${PAC_FC_ALL_REAL_KINDS})
|
|
string (REGEX REPLACE ",[0-9]+}" "}" PAC_FC_ALL_REAL_KINDS_SIZEOF ${PAC_FC_ALL_REAL_KINDS_SIZEOF})
|
|
math (EXPR PAC_FORTRAN_NUM_REAL_KINDS "${PAC_FORTRAN_NUM_REAL_KINDS} - 1")
|
|
endif ()
|
|
endif ()
|
|
|
|
set (${HDF_PREFIX}_H5CONFIG_F_NUM_RKIND "INTEGER, PARAMETER :: num_rkinds = ${PAC_FORTRAN_NUM_REAL_KINDS}")
|
|
|
|
string (REGEX REPLACE "{" "" OUT_VAR1 ${PAC_FC_ALL_REAL_KINDS})
|
|
string (REGEX REPLACE "}" "" OUT_VAR1 ${OUT_VAR1})
|
|
set (${HDF_PREFIX}_H5CONFIG_F_RKIND "INTEGER, DIMENSION(1:num_rkinds) :: rkind = (/${OUT_VAR1}/)")
|
|
|
|
string (REGEX REPLACE "{" "" OUT_VAR2 ${PAC_FC_ALL_REAL_KINDS_SIZEOF})
|
|
string (REGEX REPLACE "}" "" OUT_VAR2 ${OUT_VAR2})
|
|
set (${HDF_PREFIX}_H5CONFIG_F_RKIND_SIZEOF "INTEGER, DIMENSION(1:num_rkinds) :: rkind_sizeof = (/${OUT_VAR2}/)")
|
|
|
|
# Setting definition if there is a 16 byte fortran integer
|
|
string (FIND "${PAC_FC_ALL_INTEGER_KINDS_SIZEOF}" "16" pos)
|
|
if (${pos} EQUAL -1)
|
|
set (${HDF_PREFIX}_HAVE_Fortran_INTEGER_SIZEOF_16 0)
|
|
else ()
|
|
set (${HDF_PREFIX}_HAVE_Fortran_INTEGER_SIZEOF_16 1)
|
|
endif ()
|