Files
hdf5/HDF5Examples/CMakeLists.txt
T
cde84cdc8f Update hdf5 2.1.0 with 17commits from develop since 2/5/2026 (#6229)
* Fix MPI Fortran configuration for HDF5Examples (#6206)

When building Fortran parallel examples without MPI wrappers, the
compiler couldn't find mpi.mod because MPI_Fortran_INCLUDE_DIRS
was not populated. This occurred because find_package(MPI) was only
called for C, not Fortran.

Added enable_language(Fortran) and find_package(MPI REQUIRED
COMPONENTS Fortran) to properly configure MPI for Fortran examples,
ensuring MPI include directories and libraries are correctly set.

* Adds RFCs to the RFC table (#6190)

* Added two RFCs to the RFC table

"Adding support for digitally signed plugins to HDF5"
" Write-Ahead log"

* Updated to use the ACM link

* Add HDF5 2.0.0 Library Migration Guide (#6183)

* Add HDF5 2.0.0 Library Migration Guide

* Revise HDF5 migration guide for version 2.0.0

Use 2.0.0 consistently.

* Clarify API changes in HDF5 2.0.0 Migration Guide

* Fixes the "multiple @param documentation sections" doxygen warnings (#6195)

Addresses the "multiple @ param documentation sections" warnings are caused by the interaction of three things:

1. MACRO_EXPANSION = YES with EXPAND_ONLY_PREDEF = NO in Doxyfile.in

2. Versioned API macros in H5version.h like:

\def documentation in APIVersions.dox like:

3. \def H5Tarray_create \api_vers_2{H5Tarray_create,H5Tarray_create1,H5Tarray_create2}

Because Doxygen expands all macros, it sees H5Tarray_create as an alias for H5Tarray_create1. It then associates documentation from both the \def block (for the macro) and the function's own doc block (with \param entries) with the same function — resulting in "multiple @ param documentation sections."

* Update Doxygen version from 1.16.0 to 1.16.1

Use Doxygen 1.16.1 for all platforms. This version includes the latest
bug fixes and improvements while maintaining compatibility with our
documentation format.

* Fix Windows Doxygen installation for version 1.16.1

Handle different Windows binary naming conventions across Doxygen versions:
- 1.16.1 uses: doxygen-VERSION.windows.x64.bin.zip
- 1.16.0 uses: doxygen-VERSION.x64.bin.zip

Try the newer naming convention first, then fall back to the older one
if the download fails. This ensures compatibility across versions.

* Use ssciwr/doxygen-install in setup-doxygen action

Replace direct installation of official Doxygen binaries with
ssciwr/doxygen-install action. This avoids Java documentation parsing
errors that occur with official binaries but not with distribution
builds.

The setup-doxygen action now serves as a thin wrapper around
ssciwr/doxygen-install@f13be16c83 (v1),
using commit hash for security and reproducibility.

* Remove redundant version specification from workflows

The setup-doxygen action already has a default version (1.16.1),
so explicit version specification in workflows is unnecessary.
This follows DRY principles and makes version updates simpler.

* Updates to #6205 (#6208)

* Fix MPI Fortran configuration for HDF5Examples (#6205)

When building Fortran parallel examples standalone without MPI
wrappers, the compiler cannot find mpi.mod because
MPI_Fortran_INCLUDE_DIRS is not populated.

* Use MPI::MPI_Fortran imported target instead of raw MPI variables

Replace manual MPI_Fortran_LIBRARIES, MPI_Fortran_LINK_FLAGS, and
MPI_Fortran_INCLUDE_DIRS usage with the MPI::MPI_Fortran imported
target, which transitively carries all include dirs, compile flags,
and link flags. This eliminates the CMAKE_Fortran_EXE_LINKER_FLAGS
hack and the manual target_include_directories in H5PAR.

* Update nvhpc version to 26.1 with CUDA version 13.1. (#6213)

# branches: [develop]

* Inherit Debug C build flags in Developer build mode (#6182)

* Bump the github-actions group across 1 directory with 11 updates (#6215)

* Bump the github-actions group across 1 directory with 11 updates

Bumps the github-actions group with 11 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [actions/cache](https://github.com/actions/cache) | `5.0.1` | `5.0.3` |
| [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.2.1` | `4.2.3` |
| [softwareforgood/check-artifact-v4-existence](https://github.com/softwareforgood/check-artifact-v4-existence) | `0.3.0` | `0.4.1` |
| [github/codeql-action](https://github.com/github/codeql-action) | `3.31.9` | `4.32.2` |
| [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `0.5.11` | `1.1.0` |
| [cygwin/cygwin-install-action](https://github.com/cygwin/cygwin-install-action) | `7d2dc1e241644c3318bed9ec74115d1929baa681` | `2566376092c4e280f21131be027af3f5bb2420a4` |
| [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) | `5.1.1` | `6.0.0` |
| [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.3.4` | `1.4.2` |
| [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `1.3.1` | `1.3.5` |
| [mpi4py/setup-mpi](https://github.com/mpi4py/setup-mpi) | `1.4.1` | `1.4.2` |
| [actions/setup-python](https://github.com/actions/setup-python) | `6.1.0` | `6.2.0` |

 vmactions/openbsd-vm@d6c29ce1b4 (`1.3.5`) failed to run ssh on the github runner.  271a1ba62300483cfc58345ff9f425f1349a2cab for v1.3.4 was used instead.

* Fix issue with some Subfiling VFD test files not getting deleted (#6212)

* CMake: Fix Fortran cross-compilation support

Refactor the cross-compilation infrastructure to rely on the standard
CMAKE_CROSSCOMPILING_EMULATOR variable instead of the custom
CROSSCOMPILING_PATH environment hack.

Key changes:
- Removed `ENVIRONMENT "${CROSSCOMPILING_PATH}"` from all test definitions.
- Updated custom commands (e.g., H5match_types, H5_gen) to invoke the
  emulator explicitly when cross-compiling.
- Updated ConfigureChecks.cmake and HDF5UseFortran.cmake to enable
  `try_run` checks when an emulator is defined.
- Added config/toolchain/mingw-w64-x86-64-wine.sh wrapper to automatically
  locate MinGW runtime libraries (like libgfortran) for Wine execution.
- Cleaned up toolchain files to remove hardcoded emulator paths, deferring
  configuration to the build environment.

* Add Doxygen setup that results in missing Doygen documentation. (#6217)

* Added setup-doxygen action in ctest.yml Ubuntu gcc workflow.
* Also added actions/checkout for setup-doxygen.

* Fixes link checker failure (#6219)

Removed https:// as a workaround to avoid error by the link checker.

* Remove force-setting of ZLIB_USE_EXTERNAL / SZIP_USE_EXTERNAL (#6222)

Removes the force-setting of ZLIB_USE_EXTERNAL and SZIP_USE_EXTERNAL to
ON when HDF5_ALLOW_EXTERNAL_SUPPORT is GIT or TGZ so that zlib and
szip can be independently built from the system or externally as desired

* Truncate Subfiling VFD's stub file when truncating subfiles (#6210)

Ensure that the Subfiling VFD's stub file gets truncated when subfiles are
being truncated to avoid a potentially unreadable file when the EOF doesn't
match the stored EOF value

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Add CMake function to extract pkg-config info from libraries (#6220)

* Consistent extension for C++ (#6214)

Except for this file, all use cpp instead of cxx. No obvious reason why
the same file types should have different extensions.

* Enable Windows ARM64 CTest CI for release binaries (#6177)

* ci: add Windows ARM64 MSVC CTest job

* ci: add MSYS2 clangarm64 build on Windows ARM64

* cmake: add MSVC ARM64 presets for Windows

* zlib: fix MSVC static library flags for ARM64 builds

* Renamed .hxx file to .h and updated the #include for it.

* Committing clang-format changes

---------

Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>
Co-authored-by: Gerd Heber <gheber@hdfgroup.org>
Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Julien Schueller <schueller@phimeca.com>
Co-authored-by: Martin Diehl <mail@martin-diehl.net>
Co-authored-by: Harish RS <harish.rajaselvan@multicorewareinc.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2026-02-20 17:03:09 -06:00

231 lines
10 KiB
CMake

# Top-level CMake configuration for HDF5 Examples
# This file sets up build options, dependencies, and subdirectories for C, C++,
# Fortran, Java, and filter examples.
# It also handles MPI/parallel support, version parsing, and testing configuration.
#
# The option naming convention is H5EXAMPLE_* for examples options and HDF5_* for HDF5
# library features.
cmake_minimum_required (VERSION 3.26)
project (H5EXAMPLES C)
#-----------------------------------------------------------------------------
# Define some CMake variables for use later in the project
#-----------------------------------------------------------------------------
set (H5EXAMPLE_C_SRC_DIR ${H5EXAMPLES_SOURCE_DIR}/C)
set (H5EXAMPLE_CXX_SRC_DIR ${H5EXAMPLES_SOURCE_DIR}/CXX)
set (H5EXAMPLE_F90_SRC_DIR ${H5EXAMPLES_SOURCE_DIR}/FORTRAN)
set (H5EXAMPLE_JAVA_DIR ${H5EXAMPLES_SOURCE_DIR}/JAVA)
#-----------------------------------------------------------------------------
# Basic HDF5Examples stuff here
#-----------------------------------------------------------------------------
if (NOT EXAMPLES_EXTERNALLY_CONFIGURED)
set (H5EXAMPLE_CONFIG_DIR ${H5EXAMPLES_SOURCE_DIR}/config)
set (H5EXAMPLE_RESOURCES_DIR ${H5EXAMPLES_SOURCE_DIR}/config/cmake)
include (TestBigEndian)
if (NOT WINDOWS)
TEST_BIG_ENDIAN (H5EXAMPLE_WORDS_BIGENDIAN)
endif ()
include (${H5EXAMPLE_CONFIG_DIR}/HDFMacros.cmake)
include (${H5EXAMPLE_RESOURCES_DIR}/HDFExampleMacros.cmake)
set (CMAKE_JAVA_INCLUDE_PATH "")
SET_HDF_BUILD_TYPE()
BASIC_SETTINGS (EX)
#-----------------------------------------------------------------------------
# HDF5 support
#-----------------------------------------------------------------------------
HDF5_SUPPORT (TRUE)
APIVersion(${HDF5_VERSION} H5_LIBVER_DIR)
#-----------------------------------------------------------------------------
# Python support check
#-----------------------------------------------------------------------------
PYTHON_SUPPORT ()
endif ()
message (STATUS "HDF5 link libs: ${H5EXAMPLE_HDF5_LINK_LIBS}")
message (STATUS "HDF5 H5_LIBVER_DIR: ${H5_LIBVER_DIR} HDF5_VERSION_MAJOR: ${HDF5_VERSION_MAJOR}")
#-----------------------------------------------------------------------------
# Option to build JAVA examples
#-----------------------------------------------------------------------------
option (H5EXAMPLE_BUILD_JAVA "Build JAVA support" OFF)
if (H5EXAMPLE_BUILD_JAVA)
find_package (Java)
include (UseJava)
endif ()
#-----------------------------------------------------------------------------
# parse the full version number from H5public.h and include in H5_VERS_INFO
#-----------------------------------------------------------------------------
if(NOT DEFINED _h5public_h_contents)
find_file (_h5public_h H5public.h ${H5EXAMPLE_HDF5_INCLUDE_DIRS})
file (READ ${_h5public_h} _h5public_h_contents)
string (REGEX REPLACE ".*#define[ \t]+H5_VERS_MAJOR[ \t]+([0-9]*).*$"
"\\1" H5_VERS_MAJOR ${_h5public_h_contents})
string (REGEX REPLACE ".*#define[ \t]+H5_VERS_MINOR[ \t]+([0-9]*).*$"
"\\1" H5_VERS_MINOR ${_h5public_h_contents})
string (REGEX REPLACE ".*#define[ \t]+H5_VERS_RELEASE[ \t]+([0-9]*).*$"
"\\1" H5_VERS_RELEASE ${_h5public_h_contents})
string (REGEX REPLACE ".*#define[ \t]+H5_VERS_SUBRELEASE[ \t]+\"([0-9A-Za-z._-]*)\".*$"
"\\1" H5_VERS_SUBRELEASE ${_h5public_h_contents})
endif ()
if (WIN32)
set(CMAKE_TEST_LIB_DIRECTORY "${HDF5_TOOLS_DIR}")
else ()
set(CMAKE_TEST_LIB_DIRECTORY "${HDF5_LIBRARY_PATH}")
endif ()
#-----------------------------------------------------------------------------
# Option to Enable MPI Parallel
#-----------------------------------------------------------------------------
set (CMAKE_MODULE_PATH ${H5EXAMPLE_CONFIG_DIR} ${H5EXAMPLE_RESOURCES_DIR} ${CMAKE_MODULE_PATH})
option (H5EXAMPLE_ENABLE_PARALLEL "Enable parallel build (requires MPI)" OFF)
if (H5EXAMPLE_ENABLE_PARALLEL)
find_package(MPI REQUIRED)
if (MPI_C_FOUND)
set (H5_HAVE_PARALLEL 1)
# MPI checks, only do these if MPI_C_FOUND is true, otherwise they always fail
# and once set, they are cached as false and not regenerated
set (CMAKE_REQUIRED_LIBRARIES "${MPI_C_LIBRARIES}" )
# Used by Fortran + MPI
include (${CMAKE_ROOT}/Modules/CheckSymbolExists.cmake)
CHECK_SYMBOL_EXISTS (MPI_Comm_c2f "${MPI_C_INCLUDE_DIRS}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Comm)
CHECK_SYMBOL_EXISTS (MPI_Info_c2f "${MPI_C_INCLUDE_DIRS}/mpi.h" H5_HAVE_MPI_MULTI_LANG_Info)
else ()
message (WARNING "Parallel libraries not found")
endif ()
endif ()
# Parallel IO usage requires MPI to be Linked and Included
if (H5_HAVE_PARALLEL)
set (H5EXAMPLE_HDF5_LINK_LIBS ${H5EXAMPLE_HDF5_LINK_LIBS} ${MPI_C_LIBRARIES})
if (MPI_C_LINK_FLAGS)
set (CMAKE_EXE_LINKER_FLAGS "${MPI_C_LINK_FLAGS} ${CMAKE_EXE_LINKER_FLAGS}")
endif ()
INCLUDE_DIRECTORIES (${MPI_C_INCLUDE_DIRS})
endif ()
set_directory_properties(PROPERTIES INCLUDE_DIRECTORIES
"${H5EXAMPLE_HDF5_INCLUDE_DIRS}"
)
#-----------------------------------------------------------------------------
# Dashboard and Testing Settings
#-----------------------------------------------------------------------------
option (H5EXAMPLE_BUILD_TESTING "Build HDF5 Example Testing" OFF)
if (H5EXAMPLE_BUILD_TESTING)
set (DART_TESTING_TIMEOUT 1200 CACHE STRING
"Timeout in seconds for each test (default 1200=20minutes)"
)
enable_testing ()
include (CTest)
include (${PROJECT_SOURCE_DIR}/CTestConfig.cmake)
configure_file (${H5EXAMPLE_CONFIG_DIR}/CTestCustom.cmake ${PROJECT_BINARY_DIR}/CTestCustom.ctest @ONLY)
endif ()
if (${H5_LIBVER_DIR} GREATER 16)
#-----------------------------------------------------------------------------
# Option to build Fortran examples
# Make sure this appears before the CONFIGURE_FILE step
# so that fortran name mangling is detected before writing H5pubconf.h
#-----------------------------------------------------------------------------
# Set default name mangling : overridden by Fortran detection in fortran dir
set (H5_FC_FUNC "H5_FC_FUNC(name,NAME) name ## _")
set (H5_FC_FUNC_ "H5_FC_FUNC_(name,NAME) name ## _")
if (EXISTS "${H5EXAMPLES_SOURCE_DIR}/FORTRAN" AND IS_DIRECTORY "${H5EXAMPLES_SOURCE_DIR}/FORTRAN")
option (H5EXAMPLE_BUILD_FORTRAN "Build examples FORTRAN support" OFF)
if (H5EXAMPLE_BUILD_FORTRAN AND HDF5_PROVIDES_FORTRAN)
set (H5EXAMPLE_LINK_Fortran_LIBS ${H5EXAMPLE_HDF5_LINK_LIBS})
configure_file (${H5EXAMPLE_F90_SRC_DIR}/H5D/h5_version.h.in ${PROJECT_BINARY_DIR}/FORTRAN/H5D/h5_version.h @ONLY)
configure_file (${H5EXAMPLE_F90_SRC_DIR}/H5D/h5_version.h.in ${PROJECT_BINARY_DIR}/FORTRAN/H5G/h5_version.h @ONLY)
else ()
set (H5EXAMPLE_BUILD_FORTRAN OFF CACHE BOOL "Build examples FORTRAN support" FORCE)
endif ()
else ()
set (H5EXAMPLE_BUILD_FORTRAN OFF CACHE BOOL "Build examples FORTRAN support" FORCE)
endif ()
if (${H5_LIBVER_DIR} GREATER 18)
#-----------------------------------------------------------------------------
# Option to build JAVA examples
#-----------------------------------------------------------------------------
if (EXISTS "${H5EXAMPLES_SOURCE_DIR}/JAVA" AND IS_DIRECTORY "${H5EXAMPLES_SOURCE_DIR}/JAVA")
option (H5EXAMPLE_BUILD_JAVA "Build examples JAVA support" OFF)
else ()
set (H5EXAMPLE_BUILD_JAVA OFF CACHE BOOL "Build examples JAVA support" FORCE)
endif ()
else ()
set (H5EXAMPLE_BUILD_JAVA OFF CACHE BOOL "Build examples JAVA support" FORCE)
endif ()
#-----------------------------------------------------------------------------
# Build the HL Examples
#-----------------------------------------------------------------------------
option (H5EXAMPLE_BUILD_HL "Build examples HIGH Level support" OFF)
#-----------------------------------------------------------------------------
# Build the CPP Examples
#-----------------------------------------------------------------------------
if (EXISTS "${H5EXAMPLES_SOURCE_DIR}/CXX" AND IS_DIRECTORY "${H5EXAMPLES_SOURCE_DIR}/CXX")
option (H5EXAMPLE_BUILD_CXX "Build examples C++ support" OFF)
else ()
set (H5EXAMPLE_BUILD_CXX OFF CACHE BOOL "Build examples C++ support" FORCE)
endif ()
#-----------------------------------------------------------------------------
# Option to build filter examples
#-----------------------------------------------------------------------------
if (EXISTS "${H5EXAMPLES_SOURCE_DIR}/C/H5FLT" AND IS_DIRECTORY "${H5EXAMPLES_SOURCE_DIR}/C/H5FLT")
option (H5EXAMPLE_BUILD_FILTERS "Build examples PLUGIN filter support" OFF)
if (H5EXAMPLE_BUILD_FILTERS AND HDF5_PROVIDES_PLUGIN_SUPPORT)
if(DEFINED ENV{HDF5_PLUGIN_PATH})
message (STATUS "ENV PATH=$ENV{HDF5_PLUGIN_PATH}")
set (H5EXAMPLE_HDF5_PLUGIN_PATH $ENV{HDF5_PLUGIN_PATH})
else ()
if(NOT DEFINED H5EXAMPLE_HDF5_PLUGIN_PATH)
message (STATUS "LIBRARY PATH=${HDF5_LIBRARY_PATH}/plugin")
set (H5EXAMPLE_HDF5_PLUGIN_PATH ${HDF5_LIBRARY_PATH}/plugin)
endif ()
endif ()
message (STATUS "H5EXAMPLE_HDF5_PLUGIN_PATH=${H5EXAMPLE_HDF5_PLUGIN_PATH}")
else ()
set (H5EXAMPLE_BUILD_FILTERS OFF CACHE BOOL "Build examples PLUGIN filter support" FORCE)
endif ()
else ()
set (H5EXAMPLE_BUILD_FILTERS OFF CACHE BOOL "Build examples PLUGIN filter support" FORCE)
endif ()
else ()
set (H5EXAMPLE_BUILD_HL OFF CACHE BOOL "Build examples High Level support" FORCE)
set (H5EXAMPLE_BUILD_FORTRAN OFF CACHE BOOL "Build examples FORTRAN support" FORCE)
set (H5EXAMPLE_BUILD_JAVA OFF CACHE BOOL "Build examples JAVA support" FORCE)
set (H5EXAMPLE_BUILD_CXX OFF CACHE BOOL "Build examples C++ support" FORCE)
set (H5EXAMPLE_BUILD_FILTERS OFF CACHE BOOL "Build examples PLUGIN filter support" FORCE)
endif ()
#-----------------------------------------------------------------------------
# Build examples
#-----------------------------------------------------------------------------
add_subdirectory (C)
# Fortran MPI setup (find_package, link flags) is handled in FORTRAN/CMakeLists.txt
if (H5EXAMPLE_BUILD_FORTRAN AND HDF5_PROVIDES_FORTRAN)
add_subdirectory (FORTRAN)
endif ()
if (H5EXAMPLE_BUILD_JAVA AND HDF5_PROVIDES_JAVA)
add_subdirectory (JAVA)
endif ()
if (H5EXAMPLE_BUILD_CXX AND HDF5_PROVIDES_CPP_LIB)
add_subdirectory (CXX)
endif ()
if (H5EXAMPLE_BUILD_PYTHON)
add_subdirectory (PYTHON)
endif ()