mirror of
https://github.com/HDFGroup/hdf5.git
synced 2026-09-25 04:09:44 +03:00
cde84cdc8f
* Fix MPI Fortran configuration for HDF5Examples (#6206) When building Fortran parallel examples without MPI wrappers, the compiler couldn't find mpi.mod because MPI_Fortran_INCLUDE_DIRS was not populated. This occurred because find_package(MPI) was only called for C, not Fortran. Added enable_language(Fortran) and find_package(MPI REQUIRED COMPONENTS Fortran) to properly configure MPI for Fortran examples, ensuring MPI include directories and libraries are correctly set. * Adds RFCs to the RFC table (#6190) * Added two RFCs to the RFC table "Adding support for digitally signed plugins to HDF5" " Write-Ahead log" * Updated to use the ACM link * Add HDF5 2.0.0 Library Migration Guide (#6183) * Add HDF5 2.0.0 Library Migration Guide * Revise HDF5 migration guide for version 2.0.0 Use 2.0.0 consistently. * Clarify API changes in HDF5 2.0.0 Migration Guide * Fixes the "multiple @param documentation sections" doxygen warnings (#6195) Addresses the "multiple @ param documentation sections" warnings are caused by the interaction of three things: 1. MACRO_EXPANSION = YES with EXPAND_ONLY_PREDEF = NO in Doxyfile.in 2. Versioned API macros in H5version.h like: \def documentation in APIVersions.dox like: 3. \def H5Tarray_create \api_vers_2{H5Tarray_create,H5Tarray_create1,H5Tarray_create2} Because Doxygen expands all macros, it sees H5Tarray_create as an alias for H5Tarray_create1. It then associates documentation from both the \def block (for the macro) and the function's own doc block (with \param entries) with the same function — resulting in "multiple @ param documentation sections." * Update Doxygen version from 1.16.0 to 1.16.1 Use Doxygen 1.16.1 for all platforms. This version includes the latest bug fixes and improvements while maintaining compatibility with our documentation format. * Fix Windows Doxygen installation for version 1.16.1 Handle different Windows binary naming conventions across Doxygen versions: - 1.16.1 uses: doxygen-VERSION.windows.x64.bin.zip - 1.16.0 uses: doxygen-VERSION.x64.bin.zip Try the newer naming convention first, then fall back to the older one if the download fails. This ensures compatibility across versions. * Use ssciwr/doxygen-install in setup-doxygen action Replace direct installation of official Doxygen binaries with ssciwr/doxygen-install action. This avoids Java documentation parsing errors that occur with official binaries but not with distribution builds. The setup-doxygen action now serves as a thin wrapper around ssciwr/doxygen-install@f13be16c83 (v1), using commit hash for security and reproducibility. * Remove redundant version specification from workflows The setup-doxygen action already has a default version (1.16.1), so explicit version specification in workflows is unnecessary. This follows DRY principles and makes version updates simpler. * Updates to #6205 (#6208) * Fix MPI Fortran configuration for HDF5Examples (#6205) When building Fortran parallel examples standalone without MPI wrappers, the compiler cannot find mpi.mod because MPI_Fortran_INCLUDE_DIRS is not populated. * Use MPI::MPI_Fortran imported target instead of raw MPI variables Replace manual MPI_Fortran_LIBRARIES, MPI_Fortran_LINK_FLAGS, and MPI_Fortran_INCLUDE_DIRS usage with the MPI::MPI_Fortran imported target, which transitively carries all include dirs, compile flags, and link flags. This eliminates the CMAKE_Fortran_EXE_LINKER_FLAGS hack and the manual target_include_directories in H5PAR. * Update nvhpc version to 26.1 with CUDA version 13.1. (#6213) # branches: [develop] * Inherit Debug C build flags in Developer build mode (#6182) * Bump the github-actions group across 1 directory with 11 updates (#6215) * Bump the github-actions group across 1 directory with 11 updates Bumps the github-actions group with 11 updates in the / directory: | Package | From | To | | --- | --- | --- | | [actions/cache](https://github.com/actions/cache) | `5.0.1` | `5.0.3` | | [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.2.1` | `4.2.3` | | [softwareforgood/check-artifact-v4-existence](https://github.com/softwareforgood/check-artifact-v4-existence) | `0.3.0` | `0.4.1` | | [github/codeql-action](https://github.com/github/codeql-action) | `3.31.9` | `4.32.2` | | [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `0.5.11` | `1.1.0` | | [cygwin/cygwin-install-action](https://github.com/cygwin/cygwin-install-action) | `7d2dc1e241644c3318bed9ec74115d1929baa681` | `2566376092c4e280f21131be027af3f5bb2420a4` | | [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) | `5.1.1` | `6.0.0` | | [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.3.4` | `1.4.2` | | [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `1.3.1` | `1.3.5` | | [mpi4py/setup-mpi](https://github.com/mpi4py/setup-mpi) | `1.4.1` | `1.4.2` | | [actions/setup-python](https://github.com/actions/setup-python) | `6.1.0` | `6.2.0` | vmactions/openbsd-vm@d6c29ce1b4 (`1.3.5`) failed to run ssh on the github runner. 271a1ba62300483cfc58345ff9f425f1349a2cab for v1.3.4 was used instead. * Fix issue with some Subfiling VFD test files not getting deleted (#6212) * CMake: Fix Fortran cross-compilation support Refactor the cross-compilation infrastructure to rely on the standard CMAKE_CROSSCOMPILING_EMULATOR variable instead of the custom CROSSCOMPILING_PATH environment hack. Key changes: - Removed `ENVIRONMENT "${CROSSCOMPILING_PATH}"` from all test definitions. - Updated custom commands (e.g., H5match_types, H5_gen) to invoke the emulator explicitly when cross-compiling. - Updated ConfigureChecks.cmake and HDF5UseFortran.cmake to enable `try_run` checks when an emulator is defined. - Added config/toolchain/mingw-w64-x86-64-wine.sh wrapper to automatically locate MinGW runtime libraries (like libgfortran) for Wine execution. - Cleaned up toolchain files to remove hardcoded emulator paths, deferring configuration to the build environment. * Add Doxygen setup that results in missing Doygen documentation. (#6217) * Added setup-doxygen action in ctest.yml Ubuntu gcc workflow. * Also added actions/checkout for setup-doxygen. * Fixes link checker failure (#6219) Removed https:// as a workaround to avoid error by the link checker. * Remove force-setting of ZLIB_USE_EXTERNAL / SZIP_USE_EXTERNAL (#6222) Removes the force-setting of ZLIB_USE_EXTERNAL and SZIP_USE_EXTERNAL to ON when HDF5_ALLOW_EXTERNAL_SUPPORT is GIT or TGZ so that zlib and szip can be independently built from the system or externally as desired * Truncate Subfiling VFD's stub file when truncating subfiles (#6210) Ensure that the Subfiling VFD's stub file gets truncated when subfiles are being truncated to avoid a potentially unreadable file when the EOF doesn't match the stored EOF value Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Add CMake function to extract pkg-config info from libraries (#6220) * Consistent extension for C++ (#6214) Except for this file, all use cpp instead of cxx. No obvious reason why the same file types should have different extensions. * Enable Windows ARM64 CTest CI for release binaries (#6177) * ci: add Windows ARM64 MSVC CTest job * ci: add MSYS2 clangarm64 build on Windows ARM64 * cmake: add MSVC ARM64 presets for Windows * zlib: fix MSVC static library flags for ARM64 builds * Renamed .hxx file to .h and updated the #include for it. * Committing clang-format changes --------- Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: Gerd Heber <gheber@hdfgroup.org> Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Julien Schueller <schueller@phimeca.com> Co-authored-by: Martin Diehl <mail@martin-diehl.net> Co-authored-by: Harish RS <harish.rajaselvan@multicorewareinc.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
384 lines
17 KiB
YAML
384 lines
17 KiB
YAML
name: hdf5 callable parallel report to cdash
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# Triggers hdf5 dev parallel CTest script the workflow on a call from another workflow
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on:
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workflow_call:
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inputs:
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snap_name:
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description: 'The name in the source tarballs'
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type: string
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required: false
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default: hdfsrc
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file_base:
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description: "The common base name of the source tarballs"
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required: true
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type: string
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use_environ:
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description: 'Environment to locate files'
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type: string
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required: true
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default: snapshots
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build_mode:
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description: "release vs. debug build"
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required: true
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type: string
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cmake_version:
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description: "3.26.0 or later, latest"
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required: true
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type: string
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permissions:
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contents: read
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env:
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CTEST_OUTPUT_ON_FAILURE: 1
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jobs:
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Build_parallel_windows:
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runs-on: windows-latest
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strategy:
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matrix:
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mpi: [ 'msmpi', 'intelmpi']
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name: "Parallel ${{ matrix.mpi }} Windows-${{ inputs.build_mode }}"
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steps:
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- uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6.0.1
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- name: Install Dependencies (Windows)
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run: choco install ninja
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- name: Install CMake
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uses: lukka/get-cmake@f176ccd3f28bda569c43aae4894f06b2435a3375 # latest
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with:
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cmakeVersion: ${{ inputs.cmake_version }}
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ninjaVersion: latest
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- name: Enable Developer Command Prompt
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uses: ilammy/msvc-dev-cmd@0b201ec74fa43914dc39ae48a89fd1d8cb592756 # v1.13.0
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- name: Setup MPI (${{ matrix.mpi }})
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id: setup-mpi
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uses: mpi4py/setup-mpi@dbbb80b116bea57fc1788daf7dbbf7ab3df3a0f1 # v1
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with:
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mpi: ${{ matrix.mpi }}
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- name: Set MPI Environment Variables (${{ matrix.mpi }})
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run: |
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echo "CC=mpicc" >> $GITHUB_ENV
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echo "FC=mpif90" >> $GITHUB_ENV
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- name: Set file base name (${{ matrix.mpi }})
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id: set-file-base
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run: |
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FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
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echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
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if [[ '${{ inputs.use_environ }}' == 'release' ]]
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then
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SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
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else
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SOURCE_NAME_BASE=$(echo "hdfsrc")
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fi
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echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
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shell: bash
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# Get files created by release script
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- name: Get zip-tarball (Windows)
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uses: actions/download-artifact@37930b1c2abaa49bbe596cd826c3c89aef350131 # v7.0.0
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with:
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name: zip-tarball
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path: ${{ github.workspace }}
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- name: using powershell
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shell: pwsh
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run: Get-Location
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- name: List files for the space (Windows)
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run: |
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Get-ChildItem -Path ${{ github.workspace }}
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Get-ChildItem -Path ${{ runner.workspace }}
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shell: pwsh
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- name: Uncompress source (Windows)
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working-directory: ${{ github.workspace }}
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run: 7z x ${{ steps.set-file-base.outputs.FILE_BASE }}.zip
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shell: bash
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- name: Symlink script files for the space (${{ matrix.mpi }})
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uses: ./.github/actions/symlink-ctest-scripts
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with:
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source-base: ${{ steps.set-file-base.outputs.SOURCE_BASE }}
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- name: List files for the hdf5 (${{ matrix.mpi }})
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run: |
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Get-ChildItem -Path ${{ runner.workspace }}/hdf5
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shell: pwsh
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- name: Create options file (${{ matrix.mpi }})
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uses: "DamianReeves/write-file-action@1d019960841941be46b139298996df6f139cc7a4" # master
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with:
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path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
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write-mode: overwrite
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contents: |
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set (CTEST_DROP_SITE_INIT "my.cdash.org")
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# Change following line to submit to your CDash dashboard to a different CDash project
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#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
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set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
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set (ctest_test_args INCLUDE MPI_TEST)
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set (CTEST_TEST_TIMEOUT 300 CACHE STRING "Maximum test time allowed.")
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set (MODEL "MPI")
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set (GROUP "MPI")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }}")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_LOCALCONTENT:BOOL=OFF")
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- name: Run CTest script (${{ matrix.mpi }})
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run: |
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cd "${{ runner.workspace }}/hdf5"
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ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-${{ matrix.mpi }},LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=VS202264,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -O hdf5.log
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shell: bash
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continue-on-error: true
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# Save log files created by CTest script
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- name: Save log (${{ matrix.mpi }})
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uses: actions/upload-artifact@b7c566a772e6b6bfb58ed0dc250532a479d7789f # v5
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with:
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name: windows-${{ matrix.mpi }}-log
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path: ${{ runner.workspace }}/hdf5/hdf5.log
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Build_parallel_linux:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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mpi: [ 'mpich', 'openmpi', 'intelmpi']
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name: "Parallel ${{ matrix.mpi }} Linux-${{ inputs.build_mode }}"
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steps:
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- name: Get Actions
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uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6.0.1
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with:
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sparse-checkout: .github/actions
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- name: Install Dependencies (${{ matrix.mpi }})
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run: |
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sudo apt-get update
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sudo apt-get install ninja-build graphviz curl
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sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
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sudo apt install gcc-12 g++-12 gfortran-12
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sudo apt install libaec0 libaec-dev
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- name: Install CMake
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uses: lukka/get-cmake@f176ccd3f28bda569c43aae4894f06b2435a3375 # latest
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with:
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cmakeVersion: ${{ inputs.cmake_version }}
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ninjaVersion: latest
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- name: Setup MPI (${{ matrix.mpi }})
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id: setup-mpi
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uses: mpi4py/setup-mpi@dbbb80b116bea57fc1788daf7dbbf7ab3df3a0f1 # v1
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with:
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mpi: ${{ matrix.mpi }}
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- name: Set MPI Environment Variables (${{ matrix.mpi }})
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run: |
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echo "CC=mpicc" >> $GITHUB_ENV
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echo "FC=mpif90" >> $GITHUB_ENV
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- name: Set file base name (${{ matrix.mpi }})
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id: set-file-base
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run: |
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FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
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echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
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if [[ '${{ inputs.use_environ }}' == 'release' ]]
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then
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SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
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else
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SOURCE_NAME_BASE=$(echo "hdfsrc")
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fi
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echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
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shell: bash
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# Get files created by release script
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- name: Get tgz-tarball (${{ matrix.mpi }})
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uses: actions/download-artifact@37930b1c2abaa49bbe596cd826c3c89aef350131 # v7.0.0
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with:
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name: tgz-tarball
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path: ${{ github.workspace }}
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- name: List files for the space (Linux)
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run: |
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ls -l ${{ github.workspace }}
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ls ${{ runner.workspace }}
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- name: Uncompress source (Linux)
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run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
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- name: Symlink script files for the space (${{ matrix.mpi }})
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uses: ./.github/actions/symlink-ctest-scripts
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with:
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source-base: ${{ steps.set-file-base.outputs.SOURCE_BASE }}
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- name: List files for the hdf5 (${{ matrix.mpi }})
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run: |
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ls ${{ runner.workspace }}/hdf5
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- name: Create options file (${{ matrix.mpi }})
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uses: "DamianReeves/write-file-action@1d019960841941be46b139298996df6f139cc7a4" # master
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with:
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path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
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write-mode: overwrite
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contents: |
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set (CTEST_DROP_SITE_INIT "my.cdash.org")
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# Change following line to submit to your CDash dashboard to a different CDash project
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#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
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set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
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set (ctest_test_args INCLUDE MPI_TEST)
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set (CTEST_TEST_TIMEOUT 600 CACHE STRING "Maximum test time allowed.")
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set (MODEL "MPI")
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set (GROUP "MPI")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }}")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
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set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_LOCALCONTENT:BOOL=OFF")
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- name: Run CTest script (${{ matrix.mpi }})
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run: |
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cd "${{ runner.workspace }}/hdf5"
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ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-${{ matrix.mpi }},LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=Unix,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -O hdf5.log
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shell: bash
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continue-on-error: true
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# Save log files created by CTest script
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- name: Save log (${{ matrix.mpi }})
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uses: actions/upload-artifact@b7c566a772e6b6bfb58ed0dc250532a479d7789f # v5
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with:
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name: linux-${{ matrix.mpi }}-log
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path: ${{ runner.workspace }}/hdf5/hdf5.log
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Build_parallel_intelmpi_macos:
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runs-on: macos-latest
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strategy:
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matrix:
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mpi: [ 'mpich', 'openmpi']
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name: "Parallel ${{ matrix.mpi }} macos-${{ inputs.build_mode }}"
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steps:
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- uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # v6.0.1
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|
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- name: Install Dependencies (MacOS_latest)
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run: brew install ninja
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|
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- name: Setup MPI (${{ matrix.mpi }})
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|
id: setup-mpi
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|
uses: mpi4py/setup-mpi@dbbb80b116bea57fc1788daf7dbbf7ab3df3a0f1 # v1
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with:
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mpi: ${{ matrix.mpi }}
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|
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- name: Set MPI Environment Variables (${{ matrix.mpi }})
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|
run: |
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echo "CC=mpicc" >> $GITHUB_ENV
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|
echo "FC=mpif90" >> $GITHUB_ENV
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|
|
|
- name: Set file base name (${{ matrix.mpi }})
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|
id: set-file-base
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|
run: |
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|
FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
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echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
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|
if [[ '${{ inputs.use_environ }}' == 'release' ]]
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|
then
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|
SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
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|
else
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|
SOURCE_NAME_BASE=$(echo "hdfsrc")
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|
fi
|
|
echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
|
|
|
|
# Get files created by release script
|
|
- name: Get tgz-tarball (${{ matrix.mpi }})
|
|
uses: actions/download-artifact@37930b1c2abaa49bbe596cd826c3c89aef350131 # v7.0.0
|
|
with:
|
|
name: tgz-tarball
|
|
path: ${{ github.workspace }}
|
|
|
|
- name: List files for the space (${{ matrix.mpi }})
|
|
run: |
|
|
ls -l ${{ github.workspace }}
|
|
ls ${{ runner.workspace }}
|
|
|
|
- name: Uncompress source (${{ matrix.mpi }})
|
|
run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
|
|
|
|
- name: Symlink script files for the space (${{ matrix.mpi }})
|
|
uses: ./.github/actions/symlink-ctest-scripts
|
|
with:
|
|
source-base: ${{ steps.set-file-base.outputs.SOURCE_BASE }}
|
|
|
|
- name: List files for the hdf5 (${{ matrix.mpi }})
|
|
run: |
|
|
ls ${{ runner.workspace }}/hdf5
|
|
|
|
- name: Create options file (${{ matrix.mpi }})
|
|
uses: "DamianReeves/write-file-action@1d019960841941be46b139298996df6f139cc7a4" # master
|
|
with:
|
|
path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
|
|
write-mode: overwrite
|
|
contents: |
|
|
set (CTEST_DROP_SITE_INIT "my.cdash.org")
|
|
# Change following line to submit to your CDash dashboard to a different CDash project
|
|
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
|
|
set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
|
|
set (ctest_test_args INCLUDE MPI_TEST)
|
|
set (CTEST_TEST_TIMEOUT 600 CACHE STRING "Maximum test time allowed.")
|
|
set (MODEL "MPI")
|
|
set (GROUP "MPI")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }}")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=ON")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=OFF")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=OFF")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
|
|
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_LOCALCONTENT:BOOL=OFF")
|
|
|
|
- name: Run CTest script (${{ matrix.mpi }})
|
|
run: |
|
|
cd "${{ runner.workspace }}/hdf5"
|
|
ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-${{ matrix.mpi }},LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=Unix,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -O hdf5.log
|
|
shell: bash
|
|
continue-on-error: true
|
|
|
|
# Save log files created by CTest script
|
|
- name: Save log (${{ matrix.mpi }})
|
|
uses: actions/upload-artifact@b7c566a772e6b6bfb58ed0dc250532a479d7789f # v5
|
|
with:
|
|
name: macos-${{ matrix.mpi }}-log
|
|
path: ${{ runner.workspace }}/hdf5/hdf5.log
|