jhendersonHDF ed5eceab58 Enable data sieving for chunks that can't be cached (#6111) ...

* Enable data sieving for chunks that can't be cached

Fixed an issue that prevented use of a data sieve buffer for I/O on dataset
chunks when those chunks couldn't be cached by the library. This issue
could result in worst-case behavior of I/O on a single data element at a
time when chunks are non-contiguous with respect to memory layout.

Added a test to attempt to catch performance regressions in I/O on dataset
chunks that are non-contiguous with respect to memory layout

Updated the External File List logic to set the data sieve buffer size to
the smaller of the dataset size and the size set in the FAPL, similar to
the logic elsewhere in the library

2026-01-23 10:58:11 -06:00

..

API

Add predefined datatype for FP4 format (#6122)

2025-12-31 11:44:08 -06:00

testfiles

Fix bugs involving recursive link operations that could be triggered by deleting links to their parent group (#5853)

2025-09-30 12:20:49 -05:00

accum_swmr_reader.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

accum.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

app_ref.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

atomic_reader.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

atomic_writer.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

AtomicWriterReader.txt

spelling fixes (#1561)

2022-03-31 10:42:30 -05:00

big.c

Add support for 64 bit chunks, including 64 bit chunk dimensions (#5965)

2025-11-04 11:42:24 -06:00

bittests.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

btree2.c

Add new -testexpress option to testframe testing framework (#5286)

2025-01-31 20:11:48 -06:00

cache_api.c

Add new -testexpress option to testframe testing framework (#5286)

2025-01-31 20:11:48 -06:00

cache_common.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

cache_common.h

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

cache_image.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

cache_logging.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

cache_tagging.c

Change default nslots value for chunk cache to 8191 (#5956)

2025-10-31 14:48:05 -05:00

cache.c

Add new -testexpress option to testframe testing framework (#5286)

2025-01-31 20:11:48 -06:00

chunk_info.c

Add H5Dread_chunk2() (#5506)

2025-06-17 11:11:13 -05:00

CMakeLists.txt

Enable data sieving for chunks that can't be cached (#6111)

2026-01-23 10:58:11 -06:00

CMakePassthroughVOLTests.cmake

Rework Fortran configure to allow cross compile overrides (#5720)

2025-10-12 17:30:46 -05:00

CMakeTests.cmake

Semantic versioning update (#5944)

2025-11-04 05:11:46 -06:00

CMakeVFDTests.cmake

Rework Fortran configure to allow cross compile overrides (#5720)

2025-10-12 17:30:46 -05:00

cmpd_dset.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

cmpd_dtransform.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

cork.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

cross_read.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

dangle.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

del_many_dense_attrs.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

direct_chunk.c

Add H5Dread_chunk2() (#5506)

2025-06-17 11:11:13 -05:00

dsets.c

Add support for 64 bit chunks, including 64 bit chunk dimensions (#5965)

2025-11-04 11:42:24 -06:00

dt_arith.c

Add predefined datatypes for FP8 formats (#5882)

2025-11-03 15:10:22 -06:00

dtransform.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

dtypes.c

Add predefined datatype for FP4 format (#6122)

2025-12-31 11:44:08 -06:00

earray.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

efc.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

enc_dec_plist_cross_platform.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

enc_dec_plist.c

Change default page buffer size to 64MiB when using ROS3 driver (#5685)

2025-08-06 23:04:10 -05:00

enum.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

err_compat.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

error_test.c

Refactor warning macros (#5432)

2025-05-23 11:46:40 -05:00

event_set.c

Integrate API tests with testing framework (#5133)

2024-11-26 07:34:52 -06:00

evict_on_close.c

Make test/evict_on_close.c FILENAMES static (#5989)

2025-11-07 11:51:12 -06:00

extend.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

external_common.c

Fix minor Windows warnings (#5021)

2024-10-28 05:54:16 -07:00

external_common.h

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

external_env.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

external_fname.h

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

external.c

fix for cray compiler failing test (#5347)

2025-03-03 14:11:00 -06:00

farray.c

chore: decapitalize Fixed Array (#5659)

2025-07-15 18:20:13 +02:00

fheap.c

Add new -testexpress option to testframe testing framework (#5286)

2025-01-31 20:11:48 -06:00

file_image.c

Refactor warning macros (#5432)

2025-05-23 11:46:40 -05:00

filenotclosed.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

fillval.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

filter_fail.c

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2024-10-18 21:13:04 -07:00

filter_plugin1_dsets.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

filter_plugin2_dsets.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

filter_plugin3_dsets.c

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2024-10-18 21:13:04 -07:00

filter_plugin4_groups.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

filter_plugin.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

flush1.c

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2024-10-18 21:13:04 -07:00

flush2.c

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2024-10-18 21:13:04 -07:00

flushrefresh.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

flushrefreshTest.cmake

Rework Fortran configure to allow cross compile overrides (#5720)

2025-10-12 17:30:46 -05:00

freespace.c

Fix several issues uncovered by CVE-2025-7067 (#5938)

2025-11-11 11:52:20 -06:00

gen_bad_compound.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

gen_bad_offset.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

gen_bad_ohdr.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

gen_bogus.c

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2024-10-18 21:13:04 -07:00

gen_bounds.c

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2024-10-18 21:13:04 -07:00

gen_cross.c

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2024-10-18 21:13:04 -07:00

gen_deflate.c

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2024-10-18 21:13:04 -07:00

gen_file_image.c

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2024-10-18 21:13:04 -07:00

gen_filespace.c

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2024-10-18 21:13:04 -07:00

gen_filters.c

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2024-10-18 21:13:04 -07:00

gen_mergemsg.c

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2024-10-18 21:13:04 -07:00

gen_new_array.c

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2024-10-18 21:13:04 -07:00

gen_new_fill.c

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2024-10-18 21:13:04 -07:00

gen_new_group.c

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2024-10-18 21:13:04 -07:00

gen_new_mtime.c

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2024-10-18 21:13:04 -07:00

gen_new_super.c

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2024-10-18 21:13:04 -07:00

gen_noencoder.c

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2024-10-18 21:13:04 -07:00

gen_nullspace.c

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2024-10-18 21:13:04 -07:00

gen_old_array.c

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2024-10-18 21:13:04 -07:00

gen_old_group.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

gen_old_layout.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

gen_old_mtime.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

gen_plist.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

gen_sizes_lheap.c

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2024-10-18 21:13:04 -07:00

gen_specmetaread.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

gen_udlinks.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

genall5.c

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2024-10-18 21:13:04 -07:00

genall5.h

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

getname.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

gheap.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

h5test.c

Re-write ROS3 VFD S3 backend to use AWS' C S3 library (#5548)

2025-05-29 17:51:29 -05:00

h5test.h

Re-write ROS3 VFD S3 backend to use AWS' C S3 library (#5548)

2025-05-29 17:51:29 -05:00

H5srcdir_str.h.in

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

H5srcdir.h

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

hdfs.c

Add new multithreaded concurrency configuration (#5015)

2024-12-19 01:35:21 -08:00

hyperslab.c

Add new multithreaded concurrency configuration (#5015)

2024-12-19 01:35:21 -08:00

io_perf.c

Enable data sieving for chunks that can't be cached (#6111)

2026-01-23 10:58:11 -06:00

istore.c

build(haiku): make chunk_dims static in test/istore.c (#6049)

2025-12-01 13:16:51 -06:00

lheap.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

links_env.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

links.c

Change default file format to 1.8 (#5949)

2025-10-30 15:26:12 -05:00

mdset.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

mf.c

Fix several issues uncovered by CVE-2025-7067 (#5938)

2025-11-11 11:52:20 -06:00

mirror_vfd.c

Fix codespell issues (#5256)

2025-01-21 17:36:27 -06:00

mount.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

mtime.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

ntypes.c

Add predefined datatype for FP4 format (#6122)

2025-12-31 11:44:08 -06:00

null_vfd_plugin.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

null_vfd_plugin.h

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

null_vol_connector.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

null_vol_connector.h

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

objcopy_ref.c

Refactor warning macros (#5432)

2025-05-23 11:46:40 -05:00

objcopy.c

Refactor warning macros (#5432)

2025-05-23 11:46:40 -05:00

ohdr.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

onion.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

page_buffer.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

POSIX_Order_Write_Test_Report.docx

Moved remaining SWMR-related test files to develop.

2017-01-26 14:34:12 -05:00

POSIX_Order_Write_Test_Report.pdf

Moved remaining SWMR-related test files to develop.

2017-01-26 14:34:12 -05:00

reserved.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

ros3.c

Add documentation and s3proxy testing for ROS3 VFD (#5560)

2025-06-19 16:22:49 -05:00

rtree.c

Fix zero-element reads on virtual dsets with r-trees (#6083)

2025-12-12 09:24:09 -06:00

s3comms.c

Add documentation and s3proxy testing for ROS3 VFD (#5560)

2025-06-19 16:22:49 -05:00

select_io_dset.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

set_extent.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

ShellTests.cmake

Add check for PERL_FOUND around actual test (#5130)

2024-11-19 16:18:17 -06:00

space_overflow.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

stab.c

Change default file format to 1.8 (#5949)

2025-10-30 15:26:12 -05:00

swmr_addrem_writer.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

swmr_common.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

swmr_common.h

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

swmr_generator.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

SWMR_POSIX_Order_UG.txt

Fixed Spelling Errors (#1166)

2021-12-07 08:27:29 -06:00

swmr_reader.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

swmr_remove_reader.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

swmr_remove_writer.c

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2024-10-18 21:13:04 -07:00

swmr_sparse_reader.c

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2024-10-18 21:13:04 -07:00

swmr_sparse_writer.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

swmr_start_write.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

SWMR_UseCase_UG.txt

Fixed Spelling Errors (#1166)

2021-12-07 08:27:29 -06:00

swmr_writer.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

swmr.c

Change default file format to 1.8 (#5949)

2025-10-30 15:26:12 -05:00

tarray.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tattr.c

Change default file format to 1.8 (#5949)

2025-10-30 15:26:12 -05:00

tcheck_version.c

Semantic versioning update (#5944)

2025-11-04 05:11:46 -06:00

tchecksum.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tconfig.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tcoords.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

test_flush_refresh.sh.in

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2024-10-18 21:13:04 -07:00

test_swmr.pwsh.in

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2024-10-18 21:13:04 -07:00

test_swmr.sh.in

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2024-10-18 21:13:04 -07:00

test_use_cases.sh.in

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2024-10-18 21:13:04 -07:00

test_vds_swmr.pwsh.in

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2024-10-18 21:13:04 -07:00

test_vds_swmr.sh.in

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2024-10-18 21:13:04 -07:00

testframe.c

Move TestAlarmOn()/TestAlarmOff() back into PerformTests() (#5307)

2025-02-10 15:23:54 -06:00

testframe.h

Add new -testexpress option to testframe testing framework (#5286)

2025-01-31 20:11:48 -06:00

testhdf5.c

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2024-10-18 21:13:04 -07:00

testhdf5.h

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

testmeta.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

tfile.c

Change default file format to 1.8 (#5949)

2025-10-30 15:26:12 -05:00

tgenprop.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

th5_system.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

th5o.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

th5s.c

Fix segfault in H5S__get_select_hyper_blocklist() (#5353)

2025-03-18 11:06:36 -05:00

tid.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

timer.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

titerate.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tmeta.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tmisc.c

Add support for 64 bit chunks, including 64 bit chunk dimensions (#5965)

2025-11-04 11:42:24 -06:00

trefer_deprec.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

trefer_shutdown.c

Rename HD(f)printf() to (f)printf() (#3194)

2023-06-28 08:31:32 -07:00

trefer.c

Separate test file generation from testing in external link reference test (#5760)

2025-09-03 22:47:48 -05:00

trefstr.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tselect.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tskiplist.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tsohm.c

Add new -testexpress option to testframe testing framework (#5286)

2025-01-31 20:11:48 -06:00

ttime.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_acreate.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_atomic.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_attr_vlen.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_cancel.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_dcreate.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_develop.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_error_stacks.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_error.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_rec_rwlock.c

Add new -testexpress option to testframe testing framework (#5286)

2025-01-31 20:11:48 -06:00

ttsafe_rwlock.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_semaphore.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe_thread_id.c

Fix codespell issues (#5256)

2025-01-21 17:36:27 -06:00

ttsafe_thread_pool.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

ttsafe.h

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tunicode.c

Skip unicode tests for specific VFDs (#5823)

2025-09-15 11:42:54 -05:00

tvlstr.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

tvltypes.c

Remove const from testing parameters in testframe framework (#5214)

2025-01-08 13:33:00 -06:00

twriteorder.c

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2024-10-18 21:13:04 -07:00

unlink.c

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2024-10-18 21:13:04 -07:00

unregister.c

Refactor allocation of API context (#4942)

2024-10-24 10:09:22 -07:00

use_append_chunk_mirror.c

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2024-10-18 21:13:04 -07:00

use_append_chunk.c

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2024-10-18 21:13:04 -07:00

use_append_mchunks.c

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2024-10-18 21:13:04 -07:00

use_common.c

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2024-10-18 21:13:04 -07:00

use_disable_mdc_flushes.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

use.h

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

vds_env.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

vds_swmr_gen.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

vds_swmr_reader.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

vds_swmr_writer.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

vds_swmr.h

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

vds.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

vfd_plugin.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

vfd.c

Change default file format to 1.8 (#5949)

2025-10-30 15:26:12 -05:00

vol_plugin.c

Renamed COPYING to LICENSE (#4978)

2024-10-18 21:13:04 -07:00

vol.c

Fix checking of HDF5_VOL_CONNECTOR env. var. in some tests (#6073)

2025-12-01 11:21:19 -06:00