mirror of
https://github.com/HDFGroup/hdf5.git
synced 2026-09-25 04:09:44 +03:00
Allen Byrne
b754dcb8f2
FFM build requires Java 25, Jextract 25. Generates FFM bindings during configure. JNI is default when the requirements are not met or can be forced. Presets added for maven and FFM - JNI is default selection. Enhanced Maven options will work with either JNI or FFM New Workflows for testing and maven uploads. Extensive documentation changes for java.
584 lines
20 KiB
Java
584 lines
20 KiB
Java
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the LICENSE file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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package test;
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import static org.junit.Assert.assertFalse;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import java.io.File;
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import hdf.hdf5lib.H5;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.exceptions.HDF5Exception;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.Rule;
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import org.junit.Test;
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import org.junit.rules.TestName;
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public class TestH5T {
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@Rule
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public TestName testname = new TestName();
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private static final String H5_FILE = "testT.h5";
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long H5fid = HDF5Constants.H5I_INVALID_HID;
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long H5strdid = HDF5Constants.H5I_INVALID_HID;
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private final void _deleteFile(String filename)
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{
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File file = null;
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try {
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file = new File(filename);
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}
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catch (Throwable err) {
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}
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if (file.exists()) {
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try {
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file.delete();
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}
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catch (SecurityException e) {
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}
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}
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}
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@Before
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public void createH5file() throws NullPointerException, HDF5Exception
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{
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assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
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System.out.print(testname.getMethodName());
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H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT);
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assertTrue("H5.H5Fcreate", H5fid > 0);
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H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
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assertTrue("H5.H5Tcopy", H5strdid > 0);
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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}
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@After
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public void deleteH5file() throws HDF5LibraryException
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{
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if (H5strdid >= 0)
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try {
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H5.H5Tclose(H5strdid);
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}
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catch (Exception ex) {
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}
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if (H5fid > 0)
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try {
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H5.H5Fclose(H5fid);
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}
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catch (Exception ex) {
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}
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_deleteFile(H5_FILE);
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System.out.println();
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}
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@Test(expected = HDF5LibraryException.class)
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public void testH5Tequal_type_error() throws Throwable
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{
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H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid);
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}
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@Test
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public void testH5Tget_class()
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{
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try {
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int result = H5.H5Tget_class(H5strdid);
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assertTrue("H5.H5Tget_class", result > 0);
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String class_name = H5.H5Tget_class_name(result);
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assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING") == 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_class: " + err);
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}
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}
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@Test
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public void testH5Tget_size()
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{
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long dt_size = -1;
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try {
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dt_size = H5.H5Tget_size(H5strdid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_size:H5.H5Tget_size " + err);
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}
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assertTrue("testH5Tget_size", dt_size > 0);
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}
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@Test
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public void testH5Tset_size()
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{
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long dt_size = 5;
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try {
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H5.H5Tset_size(H5strdid, dt_size);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tset_size:H5.H5Tset_size " + err);
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}
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try {
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dt_size = H5.H5Tget_size(H5strdid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_size:H5.H5Tget_size " + err);
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}
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assertTrue("testH5Tget_size", dt_size == 5);
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}
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@Test
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public void testH5Tarray_create()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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long[] adims = {3, 5};
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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assertTrue("testH5Tarray_create", filetype_id >= 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Tget_array_ndims()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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int ndims = 0;
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long[] adims = {3, 5};
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0);
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try {
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ndims = H5.H5Tget_array_ndims(filetype_id);
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assertTrue("testH5Tget_array_ndims", ndims == 2);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Tget_array_dims()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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int ndims = 0;
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long[] adims = {3L, 5L};
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long[] rdims = new long[2];
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0);
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try {
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ndims = H5.H5Tget_array_dims(filetype_id, rdims);
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assertTrue("testH5Tget_array_dims", ndims == 2);
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assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]);
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assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_array_dims.H5Tget_array_dims " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Tcomplex_create()
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{
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String class_name;
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long[] fields1 = {0, 0, 0, 0, 0};
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long[] fields2 = {0, 0, 0, 0, 0};
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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long dt_size = -1;
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int typeclass = -1;
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int typeorder = HDF5Constants.H5T_ORDER_ERROR;
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int prec1 = 0;
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int prec2 = 0;
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try {
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filetype_id = H5.H5Tcomplex_create(HDF5Constants.H5T_IEEE_F32LE);
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assertTrue("testH5Tcomplex_create:H5Tcomplex_create", filetype_id >= 0);
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typeclass = H5.H5Tget_class(filetype_id);
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assertTrue("H5.H5Tget_class", typeclass > 0);
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class_name = H5.H5Tget_class_name(typeclass);
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assertTrue("H5.H5Tget_class_name", class_name.compareTo("H5T_COMPLEX") == 0);
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dt_size = H5.H5Tget_size(filetype_id);
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assertTrue("H5.H5Tget_size", dt_size == 8);
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typeorder = H5.H5Tget_order(filetype_id);
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assertTrue("H5.H5Tget_order", typeorder == HDF5Constants.H5T_ORDER_LE);
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prec1 = H5.H5Tget_precision(HDF5Constants.H5T_IEEE_F32LE);
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prec2 = H5.H5Tget_precision(filetype_id);
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assertTrue("H5.H5Tget_precision", prec1 == prec2);
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H5.H5Tget_fields(HDF5Constants.H5T_IEEE_F32LE, fields1);
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H5.H5Tget_fields(filetype_id, fields2);
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assertTrue("H5.H5Tget_fields[spos]", fields1[0] == fields2[0]);
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assertTrue("H5.H5Tget_fields[epos]", fields1[1] == fields2[1]);
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assertTrue("H5.H5Tget_fields[esize]", fields1[2] == fields2[2]);
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assertTrue("H5.H5Tget_fields[mpos]", fields1[3] == fields2[3]);
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assertTrue("H5.H5Tget_fields[msize]", fields1[4] == fields2[4]);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tcomplex_create " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Tenum_functions()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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String enum_type = "Enum_type";
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byte[] enum_val = new byte[1];
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String enum_name = null;
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// Create a enumerate datatype
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try {
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filetype_id = H5.H5Tcreate(HDF5Constants.H5T_ENUM, (long)1);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
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try {
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enum_val[0] = 10;
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H5.H5Tenum_insert(filetype_id, "RED", enum_val);
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enum_val[0] = 11;
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H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
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enum_val[0] = 12;
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H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
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enum_val[0] = 13;
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H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
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enum_val[0] = 14;
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H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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// Commit enumeration datatype and close it */
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H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT);
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H5.H5Tclose(filetype_id);
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// Open the dataytpe for query
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filetype_id = H5.H5Topen(H5fid, enum_type, HDF5Constants.H5P_DEFAULT);
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assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
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// Query member number and member index by member name, for enumeration type
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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// Query member value by member name, for enumeration type
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H5.H5Tenum_valueof(filetype_id, "ORANGE", enum_val);
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assertTrue("Incorrect value for enum member", enum_val[0] == 13);
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// Query member value by member index, for enumeration type
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H5.H5Tget_member_value(filetype_id, 2, enum_val);
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assertTrue("Incorrect value for enum member", enum_val[0] == 12);
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// Query member name by member value, for enumeration type
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enum_val[0] = 14;
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enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16);
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assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW") == 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_functions:query " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Tenum_create_functions()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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byte[] enum_val = new byte[1];
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// Create a enumerate datatype
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try {
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filetype_id = H5.H5Tenum_create(HDF5Constants.H5T_NATIVE_INT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_create_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id >= 0);
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try {
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enum_val[0] = 10;
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H5.H5Tenum_insert(filetype_id, "RED", enum_val);
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enum_val[0] = 11;
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H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
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enum_val[0] = 12;
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H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
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enum_val[0] = 13;
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H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
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enum_val[0] = 14;
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H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_create_functions:H5Tget_nmembers " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Topaque_functions()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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String opaque_name = null;
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// Create a opaque datatype
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try {
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filetype_id = H5.H5Tcreate(HDF5Constants.H5T_OPAQUE, (long)4);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Topaque_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Topaque_functions:H5Tcreate", filetype_id >= 0);
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try {
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H5.H5Tset_tag(filetype_id, "opaque type");
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opaque_name = H5.H5Tget_tag(filetype_id);
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assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type") == 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Topaque_functions:H5Tset_get_tag " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
|
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}
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}
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@Test
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public void testH5Tvlen_create()
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|
{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
|
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|
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try {
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filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
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assertTrue("testH5Tvlen_create", filetype_id >= 0);
|
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|
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// Check if datatype is VL type
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int vlclass = H5.H5Tget_class(filetype_id);
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assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
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assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
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}
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catch (Throwable err) {
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err.printStackTrace();
|
|
fail("testH5Tvlen_create.H5Tvlen_create " + err);
|
|
}
|
|
finally {
|
|
if (filetype_id >= 0)
|
|
try {
|
|
H5.H5Tclose(filetype_id);
|
|
}
|
|
catch (Exception ex) {
|
|
}
|
|
}
|
|
}
|
|
|
|
@Test
|
|
public void testH5Tis_variable_str()
|
|
{
|
|
long filetype_id = HDF5Constants.H5I_INVALID_HID;
|
|
|
|
try {
|
|
filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
|
|
assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0);
|
|
|
|
// Convert to variable-length string
|
|
H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE);
|
|
|
|
// Check if datatype is VL string
|
|
int vlclass = H5.H5Tget_class(filetype_id);
|
|
assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
|
|
assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
|
|
|
|
assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id));
|
|
|
|
// Verify that the class detects as a string
|
|
assertTrue("testH5Tis_variable_str:H5Tdetect_class",
|
|
H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING));
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("testH5Tis_variable_str " + err);
|
|
}
|
|
finally {
|
|
if (filetype_id >= 0)
|
|
try {
|
|
H5.H5Tclose(filetype_id);
|
|
}
|
|
catch (Exception ex) {
|
|
}
|
|
}
|
|
}
|
|
|
|
@Test
|
|
public void testH5Tcompound_functions()
|
|
{
|
|
long filetype_id = HDF5Constants.H5I_INVALID_HID;
|
|
|
|
// Create a compound datatype
|
|
try {
|
|
filetype_id = H5.H5Tcreate(HDF5Constants.H5T_COMPOUND, (long)16);
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("testH5Tcompound_functions:H5Tcreate " + err);
|
|
}
|
|
assertTrue("testH5Tcompound_functions:H5Tcreate", filetype_id >= 0);
|
|
try {
|
|
H5.H5Tinsert(filetype_id, "Lon", 0, HDF5Constants.H5T_NATIVE_DOUBLE);
|
|
H5.H5Tinsert(filetype_id, "Lat", 8, HDF5Constants.H5T_NATIVE_DOUBLE);
|
|
|
|
// Query member number and member index by member name, for enumeration type.
|
|
assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 2);
|
|
assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "Lat") == 1);
|
|
|
|
// We started to support this function for compound type in 1.8.6 release.
|
|
int order = H5.H5Tget_order(filetype_id);
|
|
assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR);
|
|
assertTrue("Wrong order for this type.",
|
|
(order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE));
|
|
|
|
// Make certain that the correct classes can be detected
|
|
assertTrue("Can't get correct class",
|
|
H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND));
|
|
assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT));
|
|
// Make certain that an incorrect class is not detected
|
|
assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME));
|
|
|
|
// Query member name by member index
|
|
String index_name = H5.H5Tget_member_name(filetype_id, 0);
|
|
assertTrue("Incorrect name for member index", index_name.compareTo("Lon") == 0);
|
|
|
|
// Query member offset by member no
|
|
long index_offset = H5.H5Tget_member_offset(filetype_id, 1);
|
|
assertTrue("Incorrect offset for member no", index_offset == 8);
|
|
|
|
// Query member type by member index
|
|
long index_type = H5.H5Tget_member_type(filetype_id, 0);
|
|
assertTrue("Incorrect type for member index",
|
|
H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type));
|
|
if (index_type >= 0)
|
|
try {
|
|
H5.H5Tclose(index_type);
|
|
}
|
|
catch (Exception ex) {
|
|
}
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("testH5Tcompound_functions:query " + err);
|
|
}
|
|
finally {
|
|
if (filetype_id >= 0)
|
|
try {
|
|
H5.H5Tclose(filetype_id);
|
|
}
|
|
catch (Exception ex) {
|
|
}
|
|
}
|
|
}
|
|
}
|