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Larry Knox 4606f0e770 Address problem links (#6387) 
* Replace link in Glossary.dox with added Chessboard.svg file.

* Exclude checking links on server "web.cels.anl.gov" that rejects
automated link checker.
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chessboard.svg
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StormDataset.png
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UML_Attribute.jpg
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UML_FileAndProps.gif
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VFL_Drivers.gif
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writeLgNumDsets.png
Consolidate documentation under docs/ directory (#6310)
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