mirror of
https://github.com/HDFGroup/hdf5.git
synced 2026-09-25 04:09:44 +03:00
H. Joe LeeandClaude Opus 5
4ee8adc29c
The hdf5_vol_rest_fetchcontent job fails at "Install HSDS dependencies"
because HSDS pins numpy==2.4.6, which publishes no distributions for
Python 3.10:
ERROR: Could not find a version that satisfies the requirement
numpy==2.4.6 (from versions: ... 2.2.5, 2.2.6)
numpy 2.4.6 declares requires_python >= 3.11, and HSDS's pyproject.toml
now says requires-python = ">=3.11". Move the matrix to Python 3.12,
which is what HSDS uses for its own unix-socket test job - the same
configuration this job exercises.
Also drop the "Fix requests version" step that force-downgraded to
requests==2.31.0. HSDS now pins requests-unixsocket==0.4.1, which fixed
the requests 2.32 breakage that step worked around, so the downgrade only
fights HSDS's own pins. Upstream HSDS has already commented the same step
out of its socket-test job.
Fixes #6657
Claude-Session: https://claude.ai/code/session_011qUw9C11arB1WftiT56EA4
Co-authored-by: Claude Opus 5 <noreply@anthropic.com>
194 lines
7.5 KiB
YAML
194 lines
7.5 KiB
YAML
name: Test HDF5 REST VOL
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on:
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workflow_call:
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inputs:
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build_mode:
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description: "Build type"
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required: true
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type: string
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permissions:
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contents: read
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env:
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CTEST_OUTPUT_ON_FAILURE: 1
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ADMIN_PASSWORD: admin
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ADMIN_USERNAME: admin
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USER_NAME: test_user1
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USER_PASSWORD: test
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USER2_NAME: test_user2
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USER2_PASSWORD: test
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HSDS_USERNAME: test_user1
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HSDS_PASSWORD: test
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HSDS_PATH: /home/test_user1/
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HDF5_API_TEST_PATH_PREFIX: /home/test_user1/
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HSDS_ENDPOINT: http+unix://%2Ftmp%2Fhs%2Fsn_1.sock
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HDF5_VOL_CONNECTOR: REST
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ROOT_DIR: ${{github.workspace}}/hsdsdata
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BUCKET_NAME: hsdstest
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jobs:
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build_and_test:
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name: Test HDF5 REST VOL connector
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runs-on: ubuntu-latest
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strategy:
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matrix:
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# HSDS requires Python >= 3.11 (its pinned numpy has no 3.10 wheels).
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# 3.12 matches the Python version HSDS uses for its own unix-socket
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# test job, which is the configuration exercised here.
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python-version: ["3.12"]
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steps:
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- name: Install dependencies
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run: |
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sudo apt-get update
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sudo apt-get install libcurl4-openssl-dev libyajl-dev
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- name: Checkout HDF5
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uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
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with:
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path: hdf5
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- name: Configure HDF5 with REST VOL connector
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shell: bash
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run: |
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mkdir ${{ github.workspace }}/hdf5/build
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cd ${{ github.workspace }}/hdf5/build
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cmake -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
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-DCMAKE_INSTALL_PREFIX=${{ runner.workspace }}/hdf5_build \
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-DBUILD_STATIC_LIBS=OFF \
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-DHDF5_BUILD_HL_LIB:BOOL=ON \
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-DHDF5_TEST_API:BOOL=ON \
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-DHDF5_ALLOW_UNSUPPORTED:BOOL=ON \
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-DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=OFF \
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-DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
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-DHDF5_VOL_ALLOW_EXTERNAL:STRING="GIT" \
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-DHDF5_VOL_URL01:STRING="https://github.com/HDFGroup/vol-rest.git" \
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-DHDF5_VOL_VOL-REST_BRANCH:STRING="master" \
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-DHDF5_VOL_VOL-REST_NAME:STRING="REST" \
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-DHDF5_VOL_VOL-REST_TEST_PARALLEL:BOOL=OFF \
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-DHDF5_VOL_REST_ENABLE_EXAMPLES=ON \
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${{ github.workspace }}/hdf5
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cat src/libhdf5.settings
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- name: Build and install HDF5 and REST VOL connector
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shell: bash
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working-directory: ${{ github.workspace }}/hdf5/build
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run: |
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cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
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cmake --install .
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echo "LD_LIBRARY_PATH=${{ github.workspace }}/hdf5/build/bin" >> $GITHUB_ENV
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
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with:
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python-version: ${{ matrix.python-version }}
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- name: Checkout HSDS
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uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
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with:
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repository: HDFGroup/hsds
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path: ${{github.workspace}}/hsds
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- name: Get HSDS HEAD commit SHA
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shell: bash
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working-directory: ${{github.workspace}}/hsds
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run: |
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export HSDS_COMMIT=`git rev-parse HEAD`
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export HSDS_COMMIT_SHORT=`git rev-parse --short HEAD`
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echo "HSDS_COMMIT=${HSDS_COMMIT}" >> $GITHUB_ENV
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echo "HSDS_COMMIT_SHORT=${HSDS_COMMIT_SHORT}" >> $GITHUB_ENV
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# Note that we don't currently cache HSDS, as we would need
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# to pick a fixed commit/tag in order to generate a reasonable
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# key to use for caching/restoring from the cache
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#- name: Restore HSDS (${{ env.HSDS_COMMIT_SHORT }}) installation cache
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# id: restore-hsds
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# uses: actions/cache@v3
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# with:
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# path: ${{ runner.workspace }}/hsds-${{ env.HSDS_COMMIT_SHORT }}-install
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# key: ${{ runner.os }}-${{ runner.arch }}-hsds-${{ env.HSDS_COMMIT }}-${{ inputs.build_mode }}-cache
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- name: Install HSDS (${{ env.HSDS_COMMIT_SHORT }}) dependencies
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shell: bash
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working-directory: ${{github.workspace}}/hsds
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run: |
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python -m pip install --upgrade pip
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python -m pip install pytest
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if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
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- name: Install HSDS (${{ env.HSDS_COMMIT_SHORT }}) package
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#if: ${{ ! steps.restore-hsds.outputs.cache-hit }}
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shell: bash
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run: |
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cd ${{github.workspace}}/hsds
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pip install -e .
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#- name: Cache HSDS (${{ env.HSDS_COMMIT_SHORT }}) installation
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# uses: actions/cache/save@v3
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# if: ${{ ! steps.restore-hsds.outputs.cache-hit }}
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# with:
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# path: ${{ runner.workspace }}/hsds-${{ env.HSDS_COMMIT_SHORT }}-install
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# key: ${{ runner.os }}-${{ runner.arch }}-hsds-${{ env.HSDS_COMMIT }}-${{ inputs.build_mode }}-cache
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- name: Run HSDS unit tests
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shell: bash
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working-directory: ${{github.workspace}}/hsds
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run: |
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pytest
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- name: Start HSDS
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working-directory: ${{github.workspace}}/hsds
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run: |
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mkdir ${{github.workspace}}/hsdsdata &&
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mkdir ${{github.workspace}}/hsdsdata/hsdstest &&
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cp admin/config/groups.default admin/config/groups.txt &&
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cp admin/config/passwd.default admin/config/passwd.txt &&
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cp admin/config/groups.default admin/config/groups.txt &&
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cp admin/config/passwd.default admin/config/passwd.txt
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ROOT_DIR=${{github.workspace}}/hsdsdata ./runall.sh --no-docker 1 &
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sleep 10
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- name: Test HSDS
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working-directory: ${{github.workspace}}/hsds
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run: |
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python tests/integ/setup_test.py
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- name: Test HDF5 REST VOL connector with external tests
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working-directory: ${{github.workspace}}/hdf5/build/
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run: |
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sudo \
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HDF5_PLUGIN_PATH="${{ runner.workspace }}/hdf5_build/lib" \
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HDF5_VOL_CONNECTOR=REST \
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ADMIN_USERNAME=admin ADMIN_PASSWORD=admin \
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USER_NAME=test_user1 USER_PASSWORD=test \
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USER2_NAME=test_user2 USER2_PASSWORD=test \
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HSDS_USERNAME=test_user1 HSDS_PASSWORD=test \
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HSDS_PATH=/home/test_user1/ HDF5_API_TEST_PATH_PREFIX=/home/test_user1/ \
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HSDS_ENDPOINT=http+unix://%2Ftmp%2Fhs%2Fsn_1.sock \
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ROOT_DIR=${{github.workspace}}/hsdsdata \
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BUCKET_NAME=hsdstest \
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ctest --build-config ${{ inputs.build_mode }} -R "test_rest_vol" .
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- name: Test HDF5 REST VOL connector with HDF5 API tests
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working-directory: ${{github.workspace}}/hdf5/build/
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# Don't test the REST VOL connector with the HDF5 API tests yet,
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# as it doesn't currently pass all the tests. Leave the step in,
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# but skip it to leave an indication that this should be re-enabled
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# in the future.
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if: false
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run: |
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sudo \
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HDF5_PLUGIN_PATH="${{ runner.workspace }}/hdf5_build/lib" \
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HDF5_VOL_CONNECTOR=REST \
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ADMIN_USERNAME=admin ADMIN_PASSWORD=admin \
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USER_NAME=test_user1 USER_PASSWORD=test \
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USER2_NAME=test_user2 USER2_PASSWORD=test \
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HSDS_USERNAME=test_user1 HSDS_PASSWORD=test \
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HSDS_PATH=/home/test_user1/ HDF5_API_TEST_PATH_PREFIX=/home/test_user1/ \
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HSDS_ENDPOINT=http+unix://%2Ftmp%2Fhs%2Fsn_1.sock \
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ROOT_DIR=${{github.workspace}}/hsdsdata \
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BUCKET_NAME=hsdstest \
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ctest --build-config ${{ inputs.build_mode }} -R "h5_api" -E "H5COPY|H5DIFF|H5LS|H5DUMP|H5REPACK" .
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