Files
dependabot[bot] 80b691787b build(deps): bump the github-actions group with 11 updates (#6656)
Bumps the github-actions group with 11 updates:

| Package | From | To |
| --- | --- | --- |
| [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.4.1` | `4.4.2` |
| [actions/setup-java](https://github.com/actions/setup-java) | `5.6.0` | `6.0.0` |
| [fortran-lang/setup-fortran](https://github.com/fortran-lang/setup-fortran) | `1.9.2` | `1.10.0` |
| [EndBug/add-and-commit](https://github.com/endbug/add-and-commit) | `10.0.0` | `11.1.1` |
| [dorny/paths-filter](https://github.com/dorny/paths-filter) | `4.0.2` | `4.0.3` |
| [github/codeql-action/init](https://github.com/github/codeql-action) | `4.37.3` | `4.37.9` |
| [github/codeql-action/analyze](https://github.com/github/codeql-action) | `4.37.3` | `4.37.9` |
| [github/codeql-action/upload-sarif](https://github.com/github/codeql-action) | `4.37.3` | `4.37.9` |
| [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.5.2` | `1.5.5` |
| [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `1.4.5` | `1.4.7` |
| [softprops/action-gh-release](https://github.com/softprops/action-gh-release) | `3.0.2` | `3.0.3` |


Updates `lukka/get-cmake` from 4.4.1 to 4.4.2
- [Release notes](https://github.com/lukka/get-cmake/releases)
- [Changelog](https://github.com/lukka/get-cmake/blob/main/RELEASE_PROCESS.md)
- [Commits](https://github.com/lukka/get-cmake/compare/4a7d025fc60f00db0c7b44ebf783d19b52444830...fffaaafeea488556c2c12dad60690008bc1caacb)

Updates `actions/setup-java` from 5.6.0 to 6.0.0
- [Release notes](https://github.com/actions/setup-java/releases)
- [Commits](https://github.com/actions/setup-java/compare/03ad4de0992f5dab5e18fcb136590ce7c4a0ac95...dd06d9cba3e5552c54d9f8ea23572deb30010f7c)

Updates `fortran-lang/setup-fortran` from 1.9.2 to 1.10.0
- [Release notes](https://github.com/fortran-lang/setup-fortran/releases)
- [Commits](https://github.com/fortran-lang/setup-fortran/compare/195bac823dc6e05bb7c706311ad4540ffc34d5b9...be037f0a45b1160f139d4ccd0b96f9e9bfd6a682)

Updates `EndBug/add-and-commit` from 10.0.0 to 11.1.1
- [Release notes](https://github.com/endbug/add-and-commit/releases)
- [Commits](https://github.com/endbug/add-and-commit/compare/290ea2c423ad77ca9c62ae0f5b224379612c0321...cc9c08ba6c8df3b93a8f2db63e89b98368ae2ae8)

Updates `dorny/paths-filter` from 4.0.2 to 4.0.3
- [Release notes](https://github.com/dorny/paths-filter/releases)
- [Changelog](https://github.com/dorny/paths-filter/blob/master/CHANGELOG.md)
- [Commits](https://github.com/dorny/paths-filter/compare/7b450fff21473bca461d4b92ce414b9d0420d706...ceb8a2b8f2d89434be7ff52d3de7ec3738c5cc9d)

Updates `github/codeql-action/init` from 4.37.3 to 4.37.9
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/github/codeql-action/compare/e4fba868fa4b1b91e1fdab776edc8cfbe6e9fb81...cdf488f595d80d6e07e03d4674febd5ab45fa938)

Updates `github/codeql-action/analyze` from 4.37.3 to 4.37.9
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](https://github.com/github/codeql-action/compare/e4fba868fa4b1b91e1fdab776edc8cfbe6e9fb81...cdf488f595d80d6e07e03d4674febd5ab45fa938)

Updates `github/codeql-action/upload-sarif` from 4.37.3 to 4.37.9
- [Release notes](https://github.com/github/codeql-action/releases)
- [Commits](https://github.com/github/codeql-action/compare/v4.37.3...v4.37.9)

Updates `vmactions/freebsd-vm` from 1.5.2 to 1.5.5
- [Release notes](https://github.com/vmactions/freebsd-vm/releases)
- [Commits](https://github.com/vmactions/freebsd-vm/compare/77ed28d336d03fe19a3f4f7266c1d2c4714dd79d...f0552d3b69211736abd97f02ff3d4674c56b73b1)

Updates `vmactions/openbsd-vm` from 1.4.5 to 1.4.7
- [Release notes](https://github.com/vmactions/openbsd-vm/releases)
- [Commits](https://github.com/vmactions/openbsd-vm/compare/c941015845c0f0c429676840963dc63b226d4f69...86cdc08415d9d0865267e686561e276c52d62530)

Updates `softprops/action-gh-release` from 3.0.2 to 3.0.3
- [Release notes](https://github.com/softprops/action-gh-release/releases)
- [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md)
- [Commits](https://github.com/softprops/action-gh-release/compare/3d0d9888cb7fd7b750713d6e236d1fcb99157228...efb35369e0ad2afab669f228072c1b0d510eae64)

---
updated-dependencies:
- dependency-name: lukka/get-cmake
  dependency-version: 4.4.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: actions/setup-java
  dependency-version: 6.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: github-actions
- dependency-name: fortran-lang/setup-fortran
  dependency-version: 1.10.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: github-actions
- dependency-name: EndBug/add-and-commit
  dependency-version: 11.1.1
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: github-actions
- dependency-name: dorny/paths-filter
  dependency-version: 4.0.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: github/codeql-action/init
  dependency-version: 4.37.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: github/codeql-action/analyze
  dependency-version: 4.37.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: github/codeql-action/upload-sarif
  dependency-version: 4.37.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: vmactions/freebsd-vm
  dependency-version: 1.5.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: vmactions/openbsd-vm
  dependency-version: 1.4.7
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
- dependency-name: softprops/action-gh-release
  dependency-version: 3.0.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: github-actions
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-09-02 09:06:37 -05:00

285 lines
12 KiB
YAML

name: hdf5 dev parallel from source CTest script runs
# Triggers the workflow on a call from another workflow
on:
workflow_call:
inputs:
snap_name:
description: 'The name in the source tarballs'
type: string
required: false
default: hdfsrc
file_base:
description: "The common base name of the source tarballs"
required: true
type: string
use_environ:
description: 'Environment to locate files'
type: string
required: true
default: snapshots
build_mode:
description: "release vs. debug build"
required: true
type: string
cmake_version:
description: "3.26.0 or later"
required: true
type: string
permissions:
contents: read
env:
CTEST_OUTPUT_ON_FAILURE: 1
jobs:
Build_openmpi_source:
name: Build OpenMPI from source
uses: ./.github/workflows/build_openmpi_source.yml
with:
build_mode: ${{ inputs.build_mode }}
Build_mpich_source:
name: Build MPICH from source
uses: ./.github/workflows/build_mpich_source.yml
with:
build_mode: ${{ inputs.build_mode }}
Build_parallel_src_openmpi:
needs: Build_openmpi_source
name: "Parallel OpenMPI GCC-${{ inputs.build_mode }}"
runs-on: ubuntu-latest
steps:
- name: Get Actions
uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
with:
sparse-checkout: .github/actions
- name: Install Linux Dependencies (OpenMPI)
run: |
sudo apt-get update
sudo apt-get install ninja-build
sudo apt install libaec0 libaec-dev
- name: Get MPI installation (OpenMPI)
uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1
with:
name: openmpi
- name: Untar MPI installation (OpenMPI)
run: |
tar xvf openmpi.tar -C ${{ runner.workspace }}
- name: Set path (OpenMPI)
shell: bash
run: |
echo "${{ runner.workspace }}/openmpi/bin" >> $GITHUB_PATH
echo "LD_LIBRARY_PATH=${{ runner.workspace }}/openmpi/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
echo "CC=${{ runner.workspace }}/openmpi/bin/mpicc" >> $GITHUB_ENV
echo "FC=${{ runner.workspace }}/openmpi/bin/mpif90" >> $GITHUB_ENV
- name: Install CMake
uses: lukka/get-cmake@fffaaafeea488556c2c12dad60690008bc1caacb # latest
with:
cmakeVersion: ${{ inputs.cmake_version }}
ninjaVersion: latest
- name: Set file base name (OpenMPI)
id: set-file-base
run: |
FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
if [[ '${{ inputs.use_environ }}' == 'release' ]]
then
SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
else
SOURCE_NAME_BASE=$(echo "hdfsrc")
fi
echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
# Get files created by release script
- name: Get tgz-tarball (OpenMPI)
uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1
with:
name: tgz-tarball
path: ${{ github.workspace }}
- name: List files for the space (OpenMPI)
run: |
ls -l ${{ github.workspace }}
ls ${{ runner.workspace }}
- name: Uncompress source (OpenMPI)
run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
- name: Symlink script files for the space (OpenMPI)
uses: ./.github/actions/symlink-ctest-scripts
with:
source-base: ${{ steps.set-file-base.outputs.SOURCE_BASE }}
- name: List files for the hdf5 (OpenMPI)
run: |
ls ${{ runner.workspace }}/hdf5
- name: Create options file (OpenMPI)
uses: "DamianReeves/write-file-action@d4ee8a06aec5db0c57a036b86f2f428e1f8b00e7" # master
with:
path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
write-mode: overwrite
contents: |
set (CTEST_DROP_SITE_INIT "my.cdash.org")
# Change following line to submit to your CDash dashboard to a different CDash project
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
set (ctest_test_args INCLUDE MPI_TEST)
set (MODEL "MPI")
set (GROUP "MPI")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_EXTERNAL:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_LOCALCONTENT:BOOL=OFF")
- name: Run CTest script (OpenMPI)
run: |
cd "${{ runner.workspace }}/hdf5"
ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-OpenMPI-source,LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=Unix,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -O hdf5.log
shell: bash
continue-on-error: true
# Save log files created by CTest script
- name: Save log (OpenMPI)
uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v5
with:
name: openmpi-log
path: ${{ runner.workspace }}/hdf5/hdf5.log
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`
Build_parallel_src_mpich:
needs: Build_mpich_source
name: "Parallel Mpich GCC-${{ inputs.build_mode }}"
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
- name: Install Linux Dependencies (MPICH)
run: |
sudo apt-get update
sudo apt-get install ninja-build
sudo apt install libaec0 libaec-dev
- name: Get MPI installation (MPICH)
uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1
with:
name: mpich
- name: Untar MPI installation (MPICH)
run: |
tar xvf mpich.tar -C ${{ runner.workspace }}
- name: Set path (MPICH)
shell: bash
run: |
echo "${{ runner.workspace }}/mpich/bin" >> $GITHUB_PATH
echo "LD_LIBRARY_PATH=${{ runner.workspace }}/mpich/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
echo "CC=${{ runner.workspace }}/mpich/bin/mpicc" >> $GITHUB_ENV
echo "FC=${{ runner.workspace }}/mpich/bin/mpif90" >> $GITHUB_ENV
- name: Install CMake
uses: lukka/get-cmake@fffaaafeea488556c2c12dad60690008bc1caacb # latest
with:
cmakeVersion: ${{ inputs.cmake_version }}
ninjaVersion: latest
- name: Set file base name (MPICH)
id: set-file-base
run: |
FILE_NAME_BASE=$(echo "${{ inputs.file_base }}")
echo "FILE_BASE=$FILE_NAME_BASE" >> $GITHUB_OUTPUT
if [[ '${{ inputs.use_environ }}' == 'release' ]]
then
SOURCE_NAME_BASE=$(echo "${{ inputs.snap_name }}")
else
SOURCE_NAME_BASE=$(echo "hdfsrc")
fi
echo "SOURCE_BASE=$SOURCE_NAME_BASE" >> $GITHUB_OUTPUT
# Get files created by release script
- name: Get tgz-tarball (MPICH)
uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1
with:
name: tgz-tarball
path: ${{ github.workspace }}
- name: List files for the space (MPICH)
run: |
ls -l ${{ github.workspace }}
ls ${{ runner.workspace }}
- name: Uncompress source (MPICH)
run: tar -zxvf ${{ github.workspace }}/${{ steps.set-file-base.outputs.FILE_BASE }}.tar.gz
- name: Symlink script files for the space (MPICH)
uses: ./.github/actions/symlink-ctest-scripts
with:
source-base: ${{ steps.set-file-base.outputs.SOURCE_BASE }}
- name: List files for the hdf5 (MPICH)
run: |
ls ${{ runner.workspace }}/hdf5
- name: Create options file (MPICH)
uses: "DamianReeves/write-file-action@d4ee8a06aec5db0c57a036b86f2f428e1f8b00e7" # master
with:
path: ${{ runner.workspace }}/hdf5/HDF5options.cmake
write-mode: overwrite
contents: |
set (CTEST_DROP_SITE_INIT "my.cdash.org")
# Change following line to submit to your CDash dashboard to a different CDash project
#set (CTEST_DROP_LOCATION_INIT "/submit.php?project=HDF5")
set (SITE_BUILDNAME_SUFFIX "${{ steps.set-file-base.outputs.FILE_BASE }}")
set (ctest_test_args INCLUDE MPI_TEST)
set (MODEL "MPI")
set (GROUP "MPI")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} --log-level=VERBOSE")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=2")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SUBFILING_VFD:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_ZLIB_SUPPORT:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PLUGIN_SUPPORT:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_EXTERNAL:BOOL=ON")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLIBAEC_USE_LOCALCONTENT:BOOL=OFF")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_USE_LOCALCONTENT:BOOL=OFF")
set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DPLUGIN_USE_LOCALCONTENT:BOOL=OFF")
- name: Run CTest script (MPICH)
run: |
cd "${{ runner.workspace }}/hdf5"
ctest -S HDF5config.cmake,CTEST_SITE_EXT=GH-${{ github.event.repository.full_name }}-MPICH-source,LOCAL_SUBMIT=ON,NINJA=TRUE,BUILD_GENERATOR=Unix,CTEST_SOURCE_NAME=${{ steps.set-file-base.outputs.SOURCE_BASE }} -C ${{ inputs.build_mode }} -O hdf5.log
shell: bash
continue-on-error: true
# Save log files created by CTest script
- name: Save log (MPICH)
uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v5
with:
name: mpich-log
path: ${{ runner.workspace }}/hdf5/hdf5.log
if-no-files-found: error # 'warn' or 'ignore' are also available, defaults to `warn`