/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the LICENSE file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ import static org.hdfgroup.javahdf5.hdf5_h.*; import java.lang.foreign.Arena; import java.lang.foreign.MemorySegment; import java.lang.foreign.ValueLayout; /** *

* Title: HDF Native Package (Java) Example *

*

* Description: this example shows how to create HDF5 datasets using the * "HDF Native Package (Java)". The example created the group structure and * datasets: * *

 *     "/" (root)
 *         integer arrays
 *             2D 32-bit integer 20x10
 *             3D 16-bit integer 20x10x5
 *         float arrays
 *             2D 64-bit double 20x10
 *             3D 32-bit float  20x10x5
 * 
* *

*/ public class HDF5DatasetCreate { private static String fname = "HDF5DatasetCreate.h5"; private static long[] dims2D = {20, 10}; private static long[] dims3D = {20, 10, 5}; private static void CreateDataset(Arena arena) { long file_id = H5I_INVALID_HID(); long group_id1 = H5I_INVALID_HID(); long group_id2 = H5I_INVALID_HID(); long dataspace_id1 = H5I_INVALID_HID(); long dataspace_id2 = H5I_INVALID_HID(); long dataset_id = H5I_INVALID_HID(); // Create a new file using default properties. try { file_id = H5Fcreate(arena.allocateFrom(fname), H5F_ACC_TRUNC(), H5P_DEFAULT(), H5P_DEFAULT()); } catch (Exception e) { e.printStackTrace(); System.err.println("Failed to create file:" + fname); return; } // Create a group in the file. try { if (file_id >= 0) { group_id1 = H5Gcreate2(file_id, arena.allocateFrom("g1"), H5P_DEFAULT(), H5P_DEFAULT(), H5P_DEFAULT()); group_id2 = H5Gcreate2(file_id, arena.allocateFrom("g2"), H5P_DEFAULT(), H5P_DEFAULT(), H5P_DEFAULT()); } } catch (Exception e) { e.printStackTrace(); } // Create the data space for the 2D dataset. try { dataspace_id1 = H5Screate_simple(2, arena.allocateFrom(ValueLayout.JAVA_LONG, dims2D), MemorySegment.NULL); } catch (Exception e) { e.printStackTrace(); } // Create the data space for the 3D dataset. try { dataspace_id2 = H5Screate_simple(3, arena.allocateFrom(ValueLayout.JAVA_LONG, dims3D), MemorySegment.NULL); } catch (Exception e) { e.printStackTrace(); } // create 2D 32-bit (4 bytes) integer dataset of 20 by 10 try { if ((group_id1 >= 0) && (dataspace_id1 >= 0)) { dataset_id = H5Dcreate2(group_id1, arena.allocateFrom("2D 32-bit integer 20x10"), H5T_STD_I32LE_g(), dataspace_id1, H5P_DEFAULT(), H5P_DEFAULT(), H5P_DEFAULT()); if (dataset_id >= 0) H5Dclose(dataset_id); } } catch (Exception e) { e.printStackTrace(); } // create 3D 8-bit (1 byte) unsigned integer dataset of 20 by 10 by 5 try { if ((group_id1 >= 0) && (dataspace_id2 >= 0)) { dataset_id = H5Dcreate2(group_id1, arena.allocateFrom("3D 8-bit unsigned integer 20x10x5"), H5T_STD_U8LE_g(), dataspace_id2, H5P_DEFAULT(), H5P_DEFAULT(), H5P_DEFAULT()); if (dataset_id >= 0) H5Dclose(dataset_id); } } catch (Exception e) { e.printStackTrace(); } // create 2D 64-bit (8 bytes) double dataset of 20 by 10 try { if ((group_id2 >= 0) && (dataspace_id1 >= 0)) { dataset_id = H5Dcreate2(group_id2, arena.allocateFrom("2D 64-bit double 20x10"), H5T_NATIVE_DOUBLE_g(), dataspace_id1, H5P_DEFAULT(), H5P_DEFAULT(), H5P_DEFAULT()); if (dataset_id >= 0) H5Dclose(dataset_id); } } catch (Exception e) { e.printStackTrace(); } // create 3D 32-bit (4 bytes) float dataset of 20 by 10 by 5 try { if ((group_id2 >= 0) && (dataspace_id2 >= 0)) { dataset_id = H5Dcreate2(group_id2, arena.allocateFrom("3D 32-bit float 20x10x5"), H5T_NATIVE_FLOAT_g(), dataspace_id2, H5P_DEFAULT(), H5P_DEFAULT(), H5P_DEFAULT()); if (dataset_id >= 0) H5Dclose(dataset_id); } } catch (Exception e) { e.printStackTrace(); } // Terminate access to the data space. try { if (dataspace_id2 >= 0) H5Sclose(dataspace_id2); } catch (Exception e) { e.printStackTrace(); } try { if (dataspace_id1 >= 0) H5Sclose(dataspace_id1); } catch (Exception e) { e.printStackTrace(); } // Close the groups. try { if (group_id2 >= 0) H5Gclose(group_id2); } catch (Exception e) { e.printStackTrace(); } try { if (group_id1 >= 0) H5Gclose(group_id1); } catch (Exception e) { e.printStackTrace(); } // Close the file. try { if (file_id >= 0) H5Fclose(file_id); } catch (Exception e) { e.printStackTrace(); } } public static void main(String[] args) { try (Arena arena = Arena.ofConfined()) { HDF5DatasetCreate.CreateDataset(arena); } } }