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90077ae8dade98c92a3501e42292b6caedd6f8ee
Commit Graph
18 Commits
Author SHA1 Message Date
jhendersonHDF 90077ae8da Fix issues with MSVC and OneAPI CI due to VS 18 2026 (#6438) 
* Update Visual Studio versions in workflows
* Revert change to Windows ARM workflows
* Pin Intel OneAPI workflows to windows-2025
* Update more instances of issues
 2026-06-13 08:14:47 -05:00
dependabot[bot] 71b4aba68d Bump the github-actions group with 12 updates (#6429) 
| Package | From | To |
| --- | --- | --- |
| [actions/checkout](https://github.com/actions/checkout) | `4` | `6` |
| [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.3.2` | `4.3.3` |
| [softwareforgood/check-artifact-v4-existence](https://github.com/softwareforgood/check-artifact-v4-existence) | `0.4.1` | `0.4.3` |
| [github/codeql-action](https://github.com/github/codeql-action) | `4.35.3` | `4.36.1` |
| [codespell-project/actions-codespell](https://github.com/codespell-project/actions-codespell) | `cf810cf4cbd6cdefe6ef86e55b64d524a16654a7` | `3b7da264292a727fcdc4acdc9eaf9a5abb92ba10` |
| [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `1.2.0` | `2.0.0` |
| [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) | `6.1.0` | `6.2.0` |
| [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.4.5` | `1.4.6` |
| [julia-actions/setup-julia](https://github.com/julia-actions/setup-julia) | `3.0.1` | `3.0.2` |
| [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `23b3fb94fbb4729a51b1c937f609483e759c8f28` | `fcf799d7ce9c305ad89eabef1fb2fa5c1c42d0ee` |
| [peaceiris/actions-gh-pages](https://github.com/peaceiris/actions-gh-pages) | `4.0.0` | `4.1.0` |
| [adriangl/check-new-commits-action](https://github.com/adriangl/check-new-commits-action) | `1.0.7` | `2.0.1` |
 2026-06-03 12:41:20 -05:00
Scot Breitenfeld 96750d6eda CI: remove redundant macOS brew installs for ninja and curl (#6406) 
Both ninja and curl are pre-installed on the GitHub macOS runners,
causing noisy "already installed" warnings. Drop those brew steps
entirely (or just remove ninja/curl where other packages like graphviz
or libaec are still needed).
 2026-05-14 10:04:12 -05:00
dependabot[bot] 6e6273e573 Bump the github-actions group with 13 updates (#6393) 
| Package | From | To |
| --- | --- | --- |
| [actions/checkout](https://github.com/actions/checkout) | `6.0.1` | `6.0.2` |
| [actions/upload-artifact](https://github.com/actions/upload-artifact) | `7.0.0` | `7.0.1` |
| [actions/cache](https://github.com/actions/cache) | `5.0.4` | `5.0.5` |
| [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.3.1` | `4.3.2` |
| [dorny/paths-filter](https://github.com/dorny/paths-filter) | `3.0.2` | `4.0.1` |
| [github/codeql-action](https://github.com/github/codeql-action) | `4.32.4` | `4.35.3` |
| [cygwin/cygwin-install-action](https://github.com/cygwin/cygwin-install-action) | `b09c8ce7e6add6720f12f30042d7c972cf4a75ec` | `4ef15ca7fd18a18f1000989fcfd968e06d146ce8` |
| [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) | `6.0.0` | `6.1.0` |
| [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.4.4` | `1.4.5` |
| [julia-actions/setup-julia](https://github.com/julia-actions/setup-julia) | `2.7.0` | `3.0.1` |
| [msys2/setup-msys2](https://github.com/msys2/setup-msys2) | `2.31.0` | `2.31.1` |
| [robinraju/release-downloader](https://github.com/robinraju/release-downloader) | `1.12` | `1.13` |
| [softprops/action-gh-release](https://github.com/softprops/action-gh-release) | `2.6.1` | `3.0.0` |
 2026-05-02 07:45:28 -05:00
dependabot[bot] c1fa9a9b8f Bump the github-actions group with 15 updates (#6342) 
Updates the requirements on [actions/checkout](https://github.com/actions/checkout), [actions/download-artifact](https://github.com/actions/download-artifact), [actions/cache](https://github.com/actions/cache), [lukka/get-cmake](https://github.com/lukka/get-cmake), [actions/setup-java](https://github.com/actions/setup-java), [EndBug/add-and-commit](https://github.com/endbug/add-and-commit), [github/codeql-action](https://github.com/github/codeql-action), [advanced-security/filter-sarif](https://github.com/advanced-security/filter-sarif), [codespell-project/actions-codespell](https://github.com/codespell-project/actions-codespell), [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action), [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm), [julia-actions/setup-julia](https://github.com/julia-actions/setup-julia), [msys2/setup-msys2](https://github.com/msys2/setup-msys2), [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) and [softprops/action-gh-release](https://github.com/softprops/action-gh-release) to permit the latest version.

* Keep vmactions/openbsd-vm@271a1ba623 # v1.3.4 until ssh doesn't fail with newer version.
 2026-04-07 21:55:50 -05:00
jhendersonHDF 353da6cce4 Fix some filters testing issues (#6299) 2026-03-18 12:35:43 -05:00
jhendersonHDF 5a11a79fc4 Improvements to CMake logic for handling filters (#6287) 
* Re-write zlib/szip CMake logic for clarity

* Update external libaec, zlib-ng and zlib builds to not use patching process

* Add FindZLIBNG module to locate zlib-ng on system

* Rework HDF5 filter plugins support
 2026-03-16 13:46:48 -05:00
dependabot[bot] 9849bda32a Bump the github-actions group with 9 updates (#6255) 
| Package | From | To |
| --- | --- | --- |
| [actions/download-artifact](https://github.com/actions/download-artifact) | `7.0.0` | `8.0.0` |
| [actions/upload-artifact](https://github.com/actions/upload-artifact) | `6.0.0` | `7.0.0` |
| [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.2.1` | `4.2.3` |
| [fortran-lang/setup-fortran](https://github.com/fortran-lang/setup-fortran) | `1.8.1` | `1.9.0` |
| [github/codeql-action](https://github.com/github/codeql-action) | `4.32.2` | `4.32.4` |
| [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `0.5.11` | `1.1.0` |
| [cygwin/cygwin-install-action](https://github.com/cygwin/cygwin-install-action) | `2566376092c4e280f21131be027af3f5bb2420a4` | `b09c8ce7e6add6720f12f30042d7c972cf4a75ec` |
| [lycheeverse/lychee-action](https://github.com/lycheeverse/lychee-action) | `2.7.0` | `2.8.0` |
| [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `1.3.4` | `1.3.6` |
 2026-03-05 11:58:01 -06:00
dependabot[bot] 3c617d23a5 Bump the github-actions group across 1 directory with 11 updates (#6215) 
* Bump the github-actions group across 1 directory with 11 updates

Bumps the github-actions group with 11 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [actions/cache](https://github.com/actions/cache) | `5.0.1` | `5.0.3` |
| [lukka/get-cmake](https://github.com/lukka/get-cmake) | `4.2.1` | `4.2.3` |
| [softwareforgood/check-artifact-v4-existence](https://github.com/softwareforgood/check-artifact-v4-existence) | `0.3.0` | `0.4.1` |
| [github/codeql-action](https://github.com/github/codeql-action) | `3.31.9` | `4.32.2` |
| [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `0.5.11` | `1.1.0` |
| [cygwin/cygwin-install-action](https://github.com/cygwin/cygwin-install-action) | `7d2dc1e241644c3318bed9ec74115d1929baa681` | `2566376092c4e280f21131be027af3f5bb2420a4` |
| [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) | `5.1.1` | `6.0.0` |
| [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.3.4` | `1.4.2` |
| [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `1.3.1` | `1.3.5` |
| [mpi4py/setup-mpi](https://github.com/mpi4py/setup-mpi) | `1.4.1` | `1.4.2` |
| [actions/setup-python](https://github.com/actions/setup-python) | `6.1.0` | `6.2.0` |

 vmactions/openbsd-vm@d6c29ce1b4 (`1.3.5`) failed to run ssh on the github runner.  271a1ba62300483cfc58345ff9f425f1349a2cab for v1.3.4 was used instead.
 2026-02-13 07:42:14 -06:00
Scot Breitenfeld a46a399230 Fixes the "multiple @param documentation sections" doxygen warnings (#6195) 
Addresses the "multiple @ param documentation sections" warnings are caused by the interaction of three things:

1. MACRO_EXPANSION = YES with EXPAND_ONLY_PREDEF = NO in Doxyfile.in

2. Versioned API macros in H5version.h like:

\def documentation in APIVersions.dox like:

3. \def H5Tarray_create \api_vers_2{H5Tarray_create,H5Tarray_create1,H5Tarray_create2}

Because Doxygen expands all macros, it sees H5Tarray_create as an alias for H5Tarray_create1. It then associates documentation from both the \def block (for the macro) and the function's own doc block (with \param entries) with the same function — resulting in "multiple @ param documentation sections."

* Update Doxygen version from 1.16.0 to 1.16.1

Use Doxygen 1.16.1 for all platforms. This version includes the latest
bug fixes and improvements while maintaining compatibility with our
documentation format.

* Fix Windows Doxygen installation for version 1.16.1

Handle different Windows binary naming conventions across Doxygen versions:
- 1.16.1 uses: doxygen-VERSION.windows.x64.bin.zip
- 1.16.0 uses: doxygen-VERSION.x64.bin.zip

Try the newer naming convention first, then fall back to the older one
if the download fails. This ensures compatibility across versions.

* Use ssciwr/doxygen-install in setup-doxygen action

Replace direct installation of official Doxygen binaries with
ssciwr/doxygen-install action. This avoids Java documentation parsing
errors that occur with official binaries but not with distribution
builds.

The setup-doxygen action now serves as a thin wrapper around
ssciwr/doxygen-install@f13be16c83 (v1),
using commit hash for security and reproducibility.

* Remove redundant version specification from workflows

The setup-doxygen action already has a default version (1.16.1),
so explicit version specification in workflows is unnecessary.
This follows DRY principles and makes version updates simpler.
 2026-02-12 10:45:17 -06:00
Larry Knox 016e1ddc97 Update ci hdf5config.cmake (#6189) 
Ubuntu Clang tests had problems when using KyleMayes/install-llvm-action to install Clang 18.1 on Ubuntu 24.04, because the Clang that it installed needed libtinfo5 not present in the Ubuntu 24.04 image. However, Clang 18.1.3 is part of the Ubuntu 24.04 image and is used when CMAKE_C_COMPILER and CMAKE_CXX_COMPILER are set to "clang" and "clang++".
 2026-02-03 10:54:39 -06:00
Larry Knox 6ce73cd9f9 Update ci hdf5config.cmake to re-enable GitHub daily tests (#6180) 
Update CI workflows to use symbolic links instead of copying files to re-enable GitHub daily tests.

Workflows:
    Update analysis.yml, cygwin.yml, and par-script.yml to use symbolic links instead of copying CTestScript.cmake and HDF5config.cmake.
    Update par-source.yml and script.yml similarly to use symbolic links for the same files.

Commands:
    Replace cp with ln -s in Linux workflows.
    Replace Copy-Item with New-Item -ItemType SymbolicLink in Windows workflows.

Purpose:
    Re-enable GitHub daily tests:  linked HDF5config.cmake allows CMake to find the HDF5VersionParsing.cmake file to get the HDF5 version.

Also updated runs-on:  ubuntu-22.04 to ubuntu-latest.
 2026-01-29 12:08:40 -06:00
dependabot[bot] 13ee56c5d3 Bump the github-actions group with 11 updates (#6138) 
Bumps the github-actions group with 11 updates:

| Package | From | To |
| --- | --- | --- |
| [actions/checkout](https://github.com/actions/checkout) | `3` | `6` |
| [actions/download-artifact](https://github.com/actions/download-artifact) | `6.0.0` | `7.0.0` |
| [actions/upload-artifact](https://github.com/actions/upload-artifact) | `5.0.0` | `6.0.0` |
| [actions/cache](https://github.com/actions/cache) | `4.3.0` | `5.0.1` |
| [github/codeql-action](https://github.com/github/codeql-action) | `3` | `4` |
| [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `0.5.10` | `0.5.11` |
| [cygwin/cygwin-install-action](https://github.com/cygwin/cygwin-install-action) | `b9bf9147075ee9811ac11beee9351eeb93e2f2fb` | `7d2dc1e241644c3318bed9ec74115d1929baa681` |
| [vmactions/freebsd-vm](https://github.com/vmactions/freebsd-vm) | `1.3.0` | `1.3.4` |
| [msys2/setup-msys2](https://github.com/msys2/setup-msys2) | `2.29.0` | `2.30.0` |
| [vmactions/openbsd-vm](https://github.com/vmactions/openbsd-vm) | `1.2.5` | `1.3.1` |
| [mpi4py/setup-mpi](https://github.com/mpi4py/setup-mpi) | `1.4.0` | `1.4.1` |
 2026-01-02 11:13:52 -06:00
Scot Breitenfeld 21d916841c Changed CI ctest verbose setting (#6136) 
* switched from always verbose ctest output to ONLY on test failures

* Windows and macOS builds will skip clang-format check before building documentation

* resolved Doxygen warnings by adding H5G_link_t=H5L_type_t to the DOXYGEN_PREDEFINED list, by adding the macro definition, Doxygen now knows to treat H5G_link_t as H5L_type_
 2025-12-30 13:16:55 -06:00
William Allen 03d00fb70e Pin GHA dependencies by hash (#6105) 
Hash-pinned dependencies are an important requirement enforced by the OpenSSF scorecard tool: https://github.com/ossf/scorecard/blob/main/docs/checks.md#pinned-dependencies

This commit pins all GitHub Actions workflows to a commit hash.
 2025-12-12 11:23:53 -06:00
dependabot[bot] c46d8b22f6 Bump the github-actions group with 8 updates (#5964) 
Bumps the github-actions group with 8 updates:

| Package | From | To |
| --- | --- | --- |
| [actions/checkout](https://github.com/actions/checkout) | `4.1.7` | `5.0.0` |
| [actions/download-artifact](https://github.com/actions/download-artifact) | `5.0.0` | `6.0.0` |
| [actions/upload-artifact](https://github.com/actions/upload-artifact) | `4` | `5` |
| [KyleMayes/install-llvm-action](https://github.com/kylemayes/install-llvm-action) | `2.0.7` | `2.0.8` |
| [azure/trusted-signing-action](https://github.com/azure/trusted-signing-action) | `0.5.9` | `0.5.10` |
| [lycheeverse/lychee-action](https://github.com/lycheeverse/lychee-action) | `2.6.1` | `2.7.0` |
| [softprops/action-gh-release](https://github.com/softprops/action-gh-release) | `2.3.3` | `2.4.1` |
| [github/codeql-action](https://github.com/github/codeql-action) | `3.30.5` | `4.31.2` |
 2025-11-03 07:39:54 -06:00
dependabot[bot] 2448f9b9bd Bump the github-actions group with 12 updates (#5891) 
Bumps the github-actions group with 12 updates:

| Package | From | To |
| --- | --- | --- |
| [actions/checkout](https://github.com/actions/checkout) | `4` | `5` |
| [actions/download-artifact](https://github.com/actions/download-artifact) | `4.3.0` | `5.0.0` |
| [actions/cache](https://github.com/actions/cache) | `3` | `4` |
| [actions/setup-java](https://github.com/actions/setup-java) | `4` | `5` |
| [aws-actions/configure-aws-credentials](https://github.com/aws-actions/configure-aws-credentials) | `4` | `5` |
| [lycheeverse/lychee-action](https://github.com/lycheeverse/lychee-action) | `2.0.2` | `2.6.1` |
| [jlumbroso/free-disk-space](https://github.com/jlumbroso/free-disk-space) | `1.3.0` | `1.3.1` |
| [robinraju/release-downloader](https://github.com/robinraju/release-downloader) | `1.11` | `1.12` |
| [softprops/action-gh-release](https://github.com/softprops/action-gh-release) | `2.3.2` | `2.3.3` |
| [ossf/scorecard-action](https://github.com/ossf/scorecard-action) | `2.4.2` | `2.4.3` |
| [github/codeql-action](https://github.com/github/codeql-action) | `3.29.7` | `3.30.5` |
| [actions/setup-python](https://github.com/actions/setup-python) | `4` | `6` |
 2025-10-02 06:42:14 -05:00
Dana Robinson 683f80ac4b Remove 'cmake' from GitHub workflow yml filenames (#5824) 
Now that we are CMake-only, there is no need to use cmake in the
GitHub CI yml filenames.
 2025-09-14 20:40:39 -05:00