193 Commits
Author SHA1 Message Date
jhendersonHDF 090e60407f Skip some parallel tests for OpenMPI version 5.0.5 (#5151)
An issue in the 5.0.5 release of OpenMPI causes some parallel
HDF5 tests to fail. The issue was resolved in the OpenMPI 5.0.6
release.
2024-11-27 10:16:33 -06:00
Dana Robinson 7f1e49206d Renamed COPYING to LICENSE (#4978)
This is where most people will expect to find license information. The
COPYING_LBNL_HDF5 file has also been renamed to LICENSE_LBNL_HDF5.
The licenses are unchanged.
2024-10-18 21:13:04 -07:00
jhendersonHDF 302ba0a7f7 Minor refactoring of testframe.c testing framework (#4930)
Added setup and cleanup callback parameters to TestInit() to perform
setup and cleanup tasks once for whole test program

Removed TestCleanup() function since its functionality is covered by
PerformTests()

Added check of the HDF5_NOCLEANUP environment variable in
GetTestCleanup()
2024-10-07 12:27:09 -05:00
jhendersonHDF 34d6ef545a Refactor h5test.c, testframe.c and testpar.h testing frameworks (#4891)
Added new testframe.h header to document testing framework functions and
split them away from h5test.h and from test programs that don't
integrate with the testframe.c testing framework

Added new test setup callback to testframe.c testing framework

Added parameters to AddTest() to specify size of test parameters so they
can be copied for later use

Enabled HDF5 error stacks in testframe.c framework by default and added
some error stack suppressions to some testhdf5 tests

Added new maxthreads option to testframe.c framework to allow specifying
the maximum number of threads a multi-threaded test can use

Moved TestExpress functionality out of testframe.c and into more general
h5test.c for wider use by tests through getter and setter

Updated some tests to not mix and match functionality between h5test.c/h
and testframe.c/h

Moved some functionality from testphdf5.h into testpar.h for parallel
tests that aren't part of testphdf5

Added new parallel test library that contains common shared
functionality for parallel tests (similar to h5test library)
2024-10-01 16:10:03 -05:00
Allen Byrne 162f01292c Rework the TestExpress usage and refactor dead code (#4590) 2024-06-20 14:01:43 -07:00
jhendersonHDF 4a0b1b66a5 Allow usage of page buffering for serial file access from parallel HDF5 builds (#4568) 2024-06-13 14:18:31 -05:00
Dana Robinson 4dbaec7991 Remove HD from last non-win32 C89 functions (#4348)
Removes the HD prefix from the last C89 functions with no special
Windows equilvalent:

* rename
* rewind
* setbuf
* signal
* tmpfile
2024-04-08 07:58:13 -07:00
Dana Robinson 15608c00b5 Call memset before stat calls (#4202)
The buffers passed to stat-like calls are only partially filled in by
the call, leaving ununitialized memory areas when the stat buffers are
created on the stack.

This change memsets the buffers to 0 before the stat calls, quieting
the -fsanitze=memory complaints.
2024-03-21 05:31:30 -07:00
jhendersonHDF c779464bfe Add GitHub actions for testing VOL connectors (#3849)
* Fix issue with HDF5_VOL_ALLOW_EXTERNAL CMake variable

* Add initial API test workflow

* Initialize parallel testing with MPI_THREAD_MULTIPLE when testing API

* Add CMake variable to allow specifying a VOL connector's package name

* Remove call to MPI_Init in serial API tests

While previously necessary, it now interferes with VOL connectors that
may need to be initialized with MPI_THREAD_MULTIPLE
2023-11-15 08:20:50 -06:00
jhendersonHDF 28d2b6771f HDF5 API test updates (#3835)
* HDF5 API test updates

Removed test duplication from bringing API tests
back into the library from external VOL tests
repo

Synced changes between API tests and library's
tests

Updated API tests CMake code to directly use and
install testhdf5, testphdf5, etc. instead of
creating duplicate binaries

Added new h5_using_native_vol() test function to
determine whether the VOL connector being used
is (or the VOL connector stack being used resolves
to) the native VOL connector

* Remove duplicate variable
2023-11-13 13:49:38 -06:00
Glenn Song 3c07147971 Create test for H5Pget_dxpl_mpio (#3825)
* Create test and add to testphdf5
2023-11-06 09:27:51 -06:00
vchoi-hdfgroup 6578c452b5 Preserve MPI-I/O file hints when fapl is closed (#3755)
* Fix for issue #3025: Save the MPI info in the file struct so H5Fget_access_plist() can retrieve it from there.
2023-10-24 21:48:28 -05:00
Glenn Song ea1714b303 Fix H5Pset_evict_on_close failing regardless of actual parallel use (#3761)
Allow H5Pset_evict_on_close to be called regardless of whether a parallel build of HDF5 is being used

Fail during file opens if H5Pset_evict_on_close has been set to true on the given File Access Property List and the size of the MPI communicator being used is greater than 1
2023-10-24 12:51:55 -05:00
jhendersonHDF af49eb5b86 Fix hangs during collective I/O with independent metadata writes (#3693) 2023-10-23 19:06:44 -07:00
Scot Breitenfeld 117d579c32 Consistent initialization of hid_t in the tests (#3521) 2023-09-08 18:06:23 -05:00
Dana Robinson d24f5d5223 Convert hbool_t --> bool in testpar (#3495) 2023-09-05 11:49:37 -07:00
Scot Breitenfeld 896270cc6b Removed all the ranks printing out testing information (#3457) 2023-08-31 21:34:57 -07:00
jhendersonHDF 216d2191c7 Skip atomicity tests for OpenMPI major versions < 5 (#3421) 2023-08-24 08:54:13 -07:00
jhendersonHDF 5df18802d0 Fix serial to parallel chunked dataset file space allocation bug (#3394) 2023-08-21 22:09:04 -05:00
jhendersonHDF 98b8fa7469 Fix assertion failure during file close on error (#3387) 2023-08-18 15:59:25 -05:00
H. Joe Lee 85d216634a chore: fix typo - persent -> present (#3273) 2023-07-25 10:47:08 -07:00
H. Joe Lee e0083c48e9 chore: fix grammar - get hang -> get hung (#3272) 2023-07-24 14:44:02 -05:00
Dana Robinson 39e6bf48c9 Remove HD from HDmem* calls (#3211) 2023-06-29 12:33:46 -07:00
Dana Robinson fd56a593b7 Remove HD from C std lib file ops (#3206)
* HDfclose
* HDferror
* HDfeof
* HDfflush
* HDfopen
* HDfread
* HDfwrite
2023-06-29 08:19:31 -07:00
Dana Robinson aebac33a1f Remove HD from memory allocate/free calls (#3195)
* HDcalloc
* HDfree
* HDmalloc
* HDrealloc
2023-06-28 15:48:12 -07:00
Dana Robinson 187ea8a9ae Rename HD(f)printf() to (f)printf() (#3194) 2023-06-28 08:31:32 -07:00
jhendersonHDF b3da28b731 Fix issue with collective metadata writes of global heap data (#2480) 2023-02-20 08:49:34 -06:00
Larry Knox 11dfa25910 Update copyright headers (#2184)
* Updated source file copyright headers to remove "Copyright by the Board of Trustees
of the University of Illinois", which is kept in the top-level COPYING file.
2022-11-01 16:02:27 -05:00
Allen Byrne ae414872f5 Develop clang 13 format (#1933)
* Update format source to clang 13

* More format changes
2022-07-26 14:45:46 -07:00
b2363a8195 H5Oflush fails for parallel (#1876)
* H5Oflush causes H5Fclose to trigger an assertion failure in metadata cache for parallel.  This commit makes sure H5Oflush fails for parallel until this problem is solved in the future.

* Committing clang-format changes

* Changed the use of H5F_get_driver_id to H5F_HAS_FEATURE.

Co-authored-by: songyulu <songyulu@jelly.ad.hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2022-07-12 08:55:34 -07:00
jhendersonHDF 2ba7a01bff Fix some const cast and stack/static object size warnings (#1700)
* Fix various warnings

* Move HDfree_const to H5private.h for wider use

* Print output from all ranks in parallel tests on allocation failure

* Move const pointer freeing macro to h5test.h for now
2022-05-01 15:54:41 -05:00
Dana Robinsonandgithub-actions d5c449248f Brings the native implementation of H5Fdelete() from Bitbucket (#524)
* Committing clang-format changes

* Brings the native VFD H5Fdelete() implementation from Bitbucket

Only brings the 'del' callbacks, not the 'open/close' scheme.

* Formatter changes

* Committing clang-format changes

* Fixes direct VFD callback name

* Removes UNUSED macro from family API call

* Adds barrier and rank 0 check to MPI-I/O VFD delete

* Revert "Adds barrier and rank 0 check to MPI-I/O VFD delete"

This reverts commit 909765f759.

* Revert "Revert "Adds barrier and rank 0 check to MPI-I/O VFD delete""

This reverts commit 9b04bef115.

* Adds a second barrier after the delete in MPI-I/O VFD

* Only delete files in the core VFD when the backing store flag is set

* Fixes string issues in multi VFD

Also, h5test.c cleanup code now uses H5Fdelete().

* Formatted source

* Rework fapl checks for MPI-I/O VFD delete callback

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-04-16 13:47:32 -05:00
Quincey Koziolandgithub-actions cb0a883f6d Minor parallel improvements (#519)
* Improve MPI error reporting, handled failed operations in parallel tests more nicely, and clean up MPI_Allreduce for determining whether to break collective I/O

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-03-26 15:14:09 -05:00
Larry Knox 2ea165efd0 Update license url part2 (#333)
* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
    file - files not in src or test.
2021-02-17 08:52:36 -06:00
jhendersonHDF afdb7903c6 Fix for HDFFV-11109 - Copy MPI comm and info object into output FAPL from H5F_get_access_plist (#342)
* Avoid freeing MPI_COMM_WORLD in H5_mpi_comm_free

* Copy MPI Comm and Info to new FAPL in H5F_get_access_plist
2021-02-17 06:37:23 -06:00
Allen Byrne b2d661b508 Clang-format of source files 2020-09-30 09:27:10 -05:00
Allen Byrne 98c8c6e45b Mostly whitespace in testpar, addl changes for tmp dir 2019-08-15 10:28:40 -05:00
Larry Knox 8a4f679fda Combine "collective group and dataset write" and "independent group and
dataset read" tests into one test.  The second test is dependent on the
file created by the first test, and will not pass when run by itself.
2019-05-03 16:08:22 -05:00
Allen Byrne 813d8fd597 Add final list of single testphdf5 tests 2019-05-02 16:20:15 -05:00
Jordan Henderson 65a820ae89 Fix some collective metadata read issues 2019-02-11 18:31:23 -06:00
Jordan Henderson 4cd10fa88e Add fix for HDFFV-10501
Add test for HDFFV-10501 fix

Add release note for HDFFV-10501 fix
2018-08-25 22:54:30 -05:00
Larry Knox 89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Quincey Koziol 0313cbb91d Final merge of page buffering branch to develop 2017-03-13 21:30:37 -07:00
Neil Fortner 7de719287a [svn-r30270] Fix an issue that could occur when allocating a chunked dataset in parallel,
with an alignment threshold set to be larger than the chunk size but smaller
than the size of the small data aggregator.

Tested: koala, ostrich (h5committest); jelly, ummon
2016-08-08 16:56:50 -05:00
Quincey Koziol d3b724f86a [svn-r30201] Description:
Switch test framework to dynamically allocate the testing array, and
expand the length of the description field.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-07-18 17:36:44 -05:00
Quincey Koziol b8f809981b [svn-r30112] Description:
Move updated flush dependency code in metadata cache from revise_chunks
branch to trunk.  Also many of the cleanups from r30111 in the revise_chunks
branch.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-06-28 16:39:09 -05:00
Allen Byrne 1bd3635781 [svn-r29880] Add HD to sleep function calls 2016-05-04 11:16:45 -05:00
Mohamad Chaarawi d12a994986 [svn-r29088] - Add a test for retrieving the property values for the new coll md functions.
- ifdef some code that don't need to be built in parallel
- more minor enhancements

tested on bb-8 with parallel and serial
2016-02-11 11:03:44 -05:00
Mohamad Chaarawi 25f271d84b [svn-r29079] rename the coll read requirement function. 2016-02-10 13:19:12 -05:00
Quincey Koziol c8a6c6030a [svn-r29077] Description:
Normalize against the trunk, in preparation for final merge.

Tested on:
    MacOSX/64 10.11.3 (amazon) w/serial & parallel
    (h5committest not required on this branch)
2016-02-10 12:55:55 -05:00