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HDF5 1.15.0 +
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API Reference
diff --git a/develop/110_2_h5_ex___g___iterate_8java.html b/develop/110_2_h5_ex___g___iterate_8java.html index 7e4dac7981d..b63323b8c6b 100644 --- a/develop/110_2_h5_ex___g___iterate_8java.html +++ b/develop/110_2_h5_ex___g___iterate_8java.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/110_2_h5_ex___g___traverse_8java.html b/develop/110_2_h5_ex___g___traverse_8java.html index 620ab0bc106..d435ff828ed 100644 --- a/develop/110_2_h5_ex___g___traverse_8java.html +++ b/develop/110_2_h5_ex___g___traverse_8java.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/110_2_h5_ex___t___object_reference_8java.html b/develop/110_2_h5_ex___t___object_reference_8java.html index 6679073fcc2..44ec15174cc 100644 --- a/develop/110_2_h5_ex___t___object_reference_8java.html +++ b/develop/110_2_h5_ex___t___object_reference_8java.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/110_2_h5_ex___t___object_reference_attribute_8java.html b/develop/110_2_h5_ex___t___object_reference_attribute_8java.html index 7cee057a857..a39f12b9299 100644 --- a/develop/110_2_h5_ex___t___object_reference_attribute_8java.html +++ b/develop/110_2_h5_ex___t___object_reference_attribute_8java.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/110_2_h_d_f5_file_structure_8java.html b/develop/110_2_h_d_f5_file_structure_8java.html index f061f70ba9f..56a3a69ef91 100644 --- a/develop/110_2_h_d_f5_file_structure_8java.html +++ b/develop/110_2_h_d_f5_file_structure_8java.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/_a_p_i_versions_8dox.html b/develop/_a_p_i_versions_8dox.html index a194f8bde32..b1614f71cfa 100644 --- a/develop/_a_p_i_versions_8dox.html +++ b/develop/_a_p_i_versions_8dox.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/_a_p_p_d_b_g.html b/develop/_a_p_p_d_b_g.html index 9b82c4f5591..12c5a656174 100644 --- a/develop/_a_p_p_d_b_g.html +++ b/develop/_a_p_p_d_b_g.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/_a_r__u_g.html b/develop/_a_r__u_g.html index 5cf18bd1729..3103fd396a4 100644 --- a/develop/_a_r__u_g.html +++ b/develop/_a_r__u_g.html @@ -37,7 +37,7 @@ Logo -
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@@ -143,7 +143,7 @@ Additional Resources

-

Chunking in HDF5

+

Chunking in HDF5

Structuring the use of chunking and tuning it for performance.

@@ -151,7 +151,7 @@ Additional Resources

-

Using the Direct Chunk Write Function

+

Using the Direct Chunk Write Function

Describes another way that chunks can be written to datasets.

@@ -159,7 +159,7 @@ Additional Resources

-

Copying Committed Datatypes with H5Ocopy

+

Copying Committed Datatypes with H5Ocopy

Describes how to copy to another file a dataset that uses a committed datatype or an object with an attribute that uses a committed datatype so that the committed datatype in the destination file can be used by multiple objects.

@@ -167,7 +167,7 @@ Additional Resources

-

Metadata Caching in HDF5

+

Metadata Caching in HDF5

Managing the HDF5 metadata cache and tuning it for performance.

@@ -175,7 +175,7 @@ Additional Resources

-

HDF5 Dynamically Loaded Filters

+

HDF5 Dynamically Loaded Filters

Describes how an HDF5 application can apply a filter that is not registered with the HDF5 Library.

@@ -183,7 +183,7 @@ Additional Resources

-

HDF5 File Image Operations

+

HDF5 File Image Operations

Describes how to work with HDF5 files in memory. Disk I/O is not required when file images are opened, created, read from, or written to.

@@ -191,7 +191,7 @@ Additional Resources

-

Modified Region Writes

+

Modified Region Writes

Describes how to set write operations for in-memory files so that only modified regions are written to storage. Available when the Core (Memory) VFD is used.

@@ -199,7 +199,7 @@ Additional Resources

-

Using Identifiers

+

Using Identifiers

Describes how identifiers behave and how they should be treated.

@@ -207,7 +207,7 @@ Additional Resources

-

Using UTF-8 Encoding in HDF5 Applications

+

Using UTF-8 Encoding in HDF5 Applications

Describes the use of UTF-8 Unicode character encodings in HDF5 applications.

@@ -215,7 +215,7 @@ Additional Resources

-

Freeing Memory Allocated by the HDF5 Library

+

Freeing Memory Allocated by the HDF5 Library

Describes how inconsistent memory management can cause heap corruption or resource leaks and possible solutions.

diff --git a/develop/_about.html b/develop/_about.html index cf0a6bdb3e9..70a53364ea6 100644 --- a/develop/_about.html +++ b/develop/_about.html @@ -37,7 +37,7 @@ Logo -
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API Reference
@@ -198,13 +198,13 @@ Adding an API Macro

Creating Custom Commands

See Doxygen's Custom Commands documentation as a general reference.

-

All custom commands for this project are located in the aliases file in the doxygen subdirectory of the main HDF5 repo.

+

All custom commands for this project are located in the aliases file in the doxygen subdirectory of the main HDF5 repo.

The custom commands are grouped in sections. Find a suitable section for your command or ask for help if unsure!

Adding a New RFC or Referencing an Existing RFC

For ease of reference, we define custom commands for each RFC in the RFCs section of the aliases file. For example the custom command ref_rfc20141210 can be used to insert a reference to "RFC: Virtual Object Layer". In other words, the markup

\ref_rfc20141210
 

yields a clickable link:

-

HDF5 Virtual Dataset

+

HDF5 Virtual Dataset

To add a new RFC, add a custom command for the RFC to the aliases file. The naming convention for the custom command is ref_rfcYYYYMMDD, where YYYYMMDD is the ID of the RFC. The URL is composed of the prefix

https://\RFCURL/
 

and the name of your RFC file, typically, a PDF file, i.e., the full URL would be

https://\RFCURL/my_great_rfc_name.pdf
 
diff --git a/develop/_about_8dox.html b/develop/_about_8dox.html index dbfc14bf24e..3b16a18646f 100644 --- a/develop/_about_8dox.html +++ b/develop/_about_8dox.html @@ -37,7 +37,7 @@ Logo -
HDF5 1.15.0 +
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API Reference
diff --git a/develop/_accessibility.html b/develop/_accessibility.html index 553c5ad06f6..45adacfa5ae 100644 --- a/develop/_accessibility.html +++ b/develop/_accessibility.html @@ -37,7 +37,7 @@ Logo -
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API Reference
@@ -167,7 +167,7 @@ In the example below, we restrict HDF5 item creation to the HDF5 1.8.x family of
herr_t H5Pclose(hid_t plist_id)
Terminates access to a property list.
hid_t H5Pcreate(hid_t cls_id)
Creates a new property list as an instance of a property list class.
-
Discussion
See RFC Setting Bounds for Object Creation in HDF5 1.10.0 for a detailed and comprehensive account of HDF5 versioning (library, file format spec., etc.) and the H5Pset_libver_bounds() function.
+
Discussion
See RFC Setting Bounds for Object Creation in HDF5 1.10.0 for a detailed and comprehensive account of HDF5 versioning (library, file format spec., etc.) and the H5Pset_libver_bounds() function.
The default range H5F_LIBVER_EARLIEST (low) - H5F_LIBVER_LATEST (high) offers the widest compatibility range, but may not be suitable for certain (feature-)use cases.
The HDF5 library comes with a forward- and backward-compatibility guarantee: This means that the latest version of the library can always read HDF5 files created by a version realesed earlier (backward compatibility). It also means that a given release of the library can read the contents of HDF5 files created with later versions of the library as long as the files do not contain features introduced in later versions (forward compatibility).
See Also
See the recipe Creating "Large" HDF5 Attributes for an example where we use HDF5 compatibility settings to enable the creation of large HDF5 attributes.
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diff --git a/develop/_attributes.html b/develop/_attributes.html index 9c4e3507d0d..a6dc27408ae 100644 --- a/develop/_attributes.html +++ b/develop/_attributes.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/_attributes_8dox.html b/develop/_attributes_8dox.html index 16fee4d0e49..f6a54e5eb52 100644 --- a/develop/_attributes_8dox.html +++ b/develop/_attributes_8dox.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/_c_o_d_e___o_f___c_o_n_d_u_c_t_8md.html b/develop/_c_o_d_e___o_f___c_o_n_d_u_c_t_8md.html index 00c08d40748..0f9f90e9808 100644 --- a/develop/_c_o_d_e___o_f___c_o_n_d_u_c_t_8md.html +++ b/develop/_c_o_d_e___o_f___c_o_n_d_u_c_t_8md.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/_c_o_n_t_r_i_b_u_t_i_n_g_8md.html b/develop/_c_o_n_t_r_i_b_u_t_i_n_g_8md.html index 901755bd01f..f22a97a7ed8 100644 --- a/develop/_c_o_n_t_r_i_b_u_t_i_n_g_8md.html +++ b/develop/_c_o_n_t_r_i_b_u_t_i_n_g_8md.html @@ -37,7 +37,7 @@ Logo -
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API Reference
diff --git a/develop/_collective_calls_8dox.html b/develop/_collective_calls_8dox.html index 107852685b6..982be563ea5 100644 --- a/develop/_collective_calls_8dox.html +++ b/develop/_collective_calls_8dox.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/_command_tools.html b/develop/_command_tools.html index 13c007b6a35..729b8733616 100644 --- a/develop/_command_tools.html +++ b/develop/_command_tools.html @@ -37,7 +37,7 @@ Logo -
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HDF5 1.15.0.bca2806
API Reference
diff --git a/develop/_cookbook.html b/develop/_cookbook.html index b73b600ad1b..98b339bb7f9 100644 --- a/develop/_cookbook.html +++ b/develop/_cookbook.html @@ -37,7 +37,7 @@ Logo -
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
diff --git a/develop/_cookbook_8dox.html b/develop/_cookbook_8dox.html index 9d2366aef43..9da0e4212b8 100644 --- a/develop/_cookbook_8dox.html +++ b/develop/_cookbook_8dox.html @@ -37,7 +37,7 @@ Logo -
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API Reference
diff --git a/develop/_d_d_l_b_n_f110.html b/develop/_d_d_l_b_n_f110.html index 4cfa4f4d308..4f498ea6644 100644 --- a/develop/_d_d_l_b_n_f110.html +++ b/develop/_d_d_l_b_n_f110.html @@ -37,7 +37,7 @@ Logo -
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API Reference
@@ -121,8 +121,7 @@ $(document).ready(function(){initNavTree('_d_d_l_b_n_f110.html',''); initResizab
DDL in BNF through HDF5 1.10
-
Todo:
Revise this & break it up!
-

+

Introduction

This document contains the data description language (DDL) for an HDF5 file. The description is in Backus-Naur Form (BNF).

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@@ -121,8 +121,7 @@ $(document).ready(function(){initNavTree('_d_d_l_b_n_f112.html',''); initResizab
DDL in BNF for HDF5 1.12 through HDF5 1.14.3
-
Todo:
Revise this & break it up!
-

+

Introduction

This document contains the data description language (DDL) for an HDF5 file. The description is in Backus-Naur Form (BNF).

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@@ -121,8 +121,7 @@ $(document).ready(function(){initNavTree('_d_d_l_b_n_f114.html',''); initResizab
DDL in BNF for HDF5 1.14.4 and above
-
Todo:
Revise this & break it up!
-

+

Introduction

This document contains the data description language (DDL) for an HDF5 file. The description is in Backus-Naur Form (BNF).

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diff --git a/develop/_ex_a_p_i.html b/develop/_ex_a_p_i.html index e51e9a3446f..830dcbe6966 100644 --- a/develop/_ex_a_p_i.html +++ b/develop/_ex_a_p_i.html @@ -37,7 +37,7 @@ Logo -
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@@ -198,17 +198,17 @@ Datatypes

Feature Languages HDF5 File Output DDL -Read / Write Array (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_arrayatt.h5 h5ex_t_arrayatt.tst h5ex_t_arrayatt.ddl +Read / Write Array (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_arrayatt.h5 h5ex_t_arrayatt.tst h5ex_t_arrayatt.ddl -Read / Write Array (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_array.h5 h5ex_t_array.tst h5ex_t_array.ddl +Read / Write Array (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_array.h5 h5ex_t_array.tst h5ex_t_array.ddl -Read / Write Bitfield (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_bitatt.h5 h5ex_t_bitatt.tst h5ex_t_bitatt.ddl +Read / Write Bitfield (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_bitatt.h5 h5ex_t_bitatt.tst h5ex_t_bitatt.ddl -Read / Write Bitfield (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_bit.h5 h5ex_t_bit.tst h5ex_t_bit.ddl +Read / Write Bitfield (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_bit.h5 h5ex_t_bit.tst h5ex_t_bit.ddl -Read / Write Compound (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_cmpdatt.h5 h5ex_t_cmpdatt.tst h5ex_t_cmpdatt.ddl +Read / Write Compound (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_cmpdatt.h5 h5ex_t_cmpdatt.tst h5ex_t_cmpdatt.ddl -Read / Write Compound (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_cmpd.h5 h5ex_t_cmpd.tst h5ex_t_cmpd.ddl +Read / Write Compound (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_cmpd.h5 h5ex_t_cmpd.tst h5ex_t_cmpd.ddl Commit Named Datatype and Read Back C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_commit.h5 h5ex_t_commit.tst h5ex_t_commit.ddl @@ -242,7 +242,7 @@ Datatypes

Read / Write Region References (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_regref.h5 h5ex_t_regref.tst h5ex_t_regref.ddl -Read / Write String (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_stringatt.h5 h5ex_t_stringatt.tst h5ex_t_stringatt.ddl +Read / Write String (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_stringatt.h5 h5ex_t_stringatt.tst h5ex_t_stringatt.ddl Read / Write String (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_string.h5 h5ex_t_string.tst h5ex_t_string.ddl @@ -250,7 +250,7 @@ Datatypes

Read / Write Variable Length (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_vlen.h5 h5ex_t_vlen.tst h5ex_t_vlen.ddl -Read / Write Variable Length String (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_vlstringatt.h5 h5ex_t_vlstringatt.tst h5ex_t_vlstringatt.ddl +Read / Write Variable Length String (Attribute) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_vlstringatt.h5 h5ex_t_vlstringatt.tst h5ex_t_vlstringatt.ddl Read / Write Variable Length String (Dataset) C FORTRAN Java JavaObj MATLAB PyHigh PyLow h5ex_t_vlstring.h5 h5ex_t_vlstring.tst h5ex_t_vlstring.ddl @@ -294,11 +294,11 @@ Java General

Retrieve the File Structure Java JavaObj HDF5FileStructure.txt -Create Groups Java JavaObj HDF5GroupCreate.txt +Create Groups Java JavaObj HDF5GroupCreate.txt Select a Subset of a Dataset Java JavaObj HDF5SubsetSelect.txt -Create Two Datasets Within Groups Java JavaObj HDF5GroupDatasetCreate.txt +Create Two Datasets Within Groups Java JavaObj HDF5GroupDatasetCreate.txt

Parallel

@@ -306,23 +306,23 @@ Parallel

Feature Languages HDF5 File Output -Creating and Accessing a File C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst +Creating and Accessing a File C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst -Creating and Accessing a Dataset C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst +Creating and Accessing a Dataset C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst -Writing and Reading Contiguous Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst +Writing and Reading Contiguous Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst -Writing and Reading Regularly Spaced Data Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst +Writing and Reading Regularly Spaced Data Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst -Writing and Reading Pattern Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst +Writing and Reading Pattern Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst -Writing and Reading Chunk Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst +Writing and Reading Chunk Hyperslabs C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst -Using the Subfiling VFD to Write a File Striped Across Multiple Subfiles C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst +Using the Subfiling VFD to Write a File Striped Across Multiple Subfiles C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst Write to Datasets with Filters Applied C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst -Collectively Write Datasets with Filters and Not All Ranks have Data C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst +Collectively Write Datasets with Filters and Not All Ranks have Data C FORTRAN MATLAB PyHigh PyLow ph5_.h5 ph5_.tst

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HDF5 Filters
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- - Filters -

Filters in HDF5

- - Note: Transient pipelines described in this document have not - been implemented. - -

Introduction

- -

HDF5 allows chunked data to pass through user-defined filters - on the way to or from disk. The filters operate on chunks of an - H5D_CHUNKED dataset can be arranged in a pipeline - so output of one filter becomes the input of the next filter. - -

Each filter has a two-byte identification number (type - H5Z_filter_t) allocated by The HDF Group and can also be - passed application-defined integer resources to control its - behavior. Each filter also has an optional ASCII comment - string. - -

- - - - - - - - - - - - - - - - - - - -
Values for H5Z_filter_tDescription
0-255These values are reserved for filters predefined and - registered by the HDF5 library and of use to the general - public. They are described in a separate section - below.
256-511Filter numbers in this range are used for testing only - and can be used temporarily by any organization. No - attempt is made to resolve numbering conflicts since all - definitions are by nature temporary.
512-65535Reserved for future assignment. Please contact the - HDF5 development team - to reserve a value or range of values for - use by your filters.
- -

Defining and Querying the Filter Pipeline

- -

Two types of filters can be applied to raw data I/O: permanent - filters and transient filters. The permanent filter pipeline is - defined when the dataset is created while the transient pipeline - is defined for each I/O operation. During an - H5Dwrite() the transient filters are applied first - in the order defined and then the permanent filters are applied - in the order defined. For an H5Dread() the - opposite order is used: permanent filters in reverse order, then - transient filters in reverse order. An H5Dread() - must result in the same amount of data for a chunk as the - original H5Dwrite(). - -

The permanent filter pipeline is defined by calling - H5Pset_filter() for a dataset creation property - list while the transient filter pipeline is defined by calling - that function for a dataset transfer property list. - -

-
herr_t H5Pset_filter (hid_t plist, - H5Z_filter_t filter, unsigned int flags, - size_t cd_nelmts, const unsigned int - cd_values[]) -
This function adds the specified filter and - corresponding properties to the end of the transient or - permanent output filter pipeline (depending on whether - plist is a dataset creation or dataset transfer - property list). The flags argument specifies certain - general properties of the filter and is documented below. The - cd_values is an array of cd_nelmts integers - which are auxiliary data for the filter. The integer values - will be stored in the dataset object header as part of the - filter information. -
int H5Pget_nfilters (hid_t plist) -
This function returns the number of filters defined in the - permanent or transient filter pipeline depending on whether - plist is a dataset creation or dataset transfer - property list. In each pipeline the filters are numbered from - 0 through N-1 where N is the value returned - by this function. During output to the file the filters of a - pipeline are applied in increasing order (the inverse is true - for input). Zero is returned if there are no filters in the - pipeline and a negative value is returned for errors. -
H5Z_filter_t H5Pget_filter (hid_t plist, - int filter_number, unsigned int *flags, - size_t *cd_nelmts, unsigned int - *cd_values, size_t namelen, char name[]) -
This is the query counterpart of - H5Pset_filter() and returns information about a - particular filter number in a permanent or transient pipeline - depending on whether plist is a dataset creation or - dataset transfer property list. On input, cd_nelmts - indicates the number of entries in the cd_values - array allocated by the caller while on exit it contains the - number of values defined by the filter. The - filter_number should be a value between zero and - N-1 as described for H5Pget_nfilters() - and the function will return failure (a negative value) if the - filter number is out of range. If name is a pointer - to an array of at least namelen bytes then the filter - name will be copied into that array. The name will be null - terminated if the namelen is large enough. The - filter name returned will be the name appearing in the file or - else the name registered for the filter or else an empty string. -
- -

The flags argument to the functions above is a bit vector of - the following fields: - -

- - - - - - - - - - -
Values for flagsDescription
H5Z_FLAG_OPTIONALIf this bit is set then the filter is optional. If - the filter fails (see below) during an - H5Dwrite() operation then the filter is - just excluded from the pipeline for the chunk for which - it failed; the filter will not participate in the - pipeline during an H5Dread() of the chunk. - This is commonly used for compression filters: if the - compression result would be larger than the input then - the compression filter returns failure and the - uncompressed data is stored in the file. If this bit is - clear and a filter fails then the - H5Dwrite() or H5Dread() also - fails.
- -

Defining Filters

- -

Each filter is bidirectional, handling both input and output to - the file, and a flag is passed to the filter to indicate the - direction. In either case the filter reads a chunk of data from - a buffer, usually performs some sort of transformation on the - data, places the result in the same or new buffer, and returns - the buffer pointer and size to the caller. If something goes - wrong the filter should return zero to indicate a failure. - -

During output, a filter that fails or isn't defined and is - marked as optional is silently excluded from the pipeline and - will not be used when reading that chunk of data. A required - filter that fails or isn't defined causes the entire output - operation to fail. During input, any filter that has not been - excluded from the pipeline during output and fails or is not - defined will cause the entire input operation to fail. - -

Filters are defined in two phases. The first phase is to - define a function to act as the filter and link the function - into the application. The second phase is to register the - function, associating the function with an - H5Z_filter_t identification number and a comment. - -

-
typedef size_t (*H5Z_func_t)(unsigned int - flags, size_t cd_nelmts, const unsigned int - cd_values[], size_t nbytes, size_t - *buf_size, void **buf) -
The flags, cd_nelmts, and - cd_values are the same as for the - H5Pset_filter() function with the additional flag - H5Z_FLAG_REVERSE which is set when the filter is - called as part of the input pipeline. The input buffer is - pointed to by *buf and has a total size of - *buf_size bytes but only nbytes are valid - data. The filter should perform the transformation in place if - possible and return the number of valid bytes or zero for - failure. If the transformation cannot be done in place then - the filter should allocate a new buffer with - malloc() and assign it to *buf, - assigning the allocated size of that buffer to - *buf_size. The old buffer should be freed - by calling free(). - -

-
herr_t H5Zregister (H5Z_filter_t filter_id, - const char *comment, H5Z_func_t - filter) -
The filter function is associated with a filter - number and a short ASCII comment which will be stored in the - hdf5 file if the filter is used as part of a permanent - pipeline during dataset creation. -
- -

Predefined Filters

- -

If zlib version 1.1.2 or later was found - during configuration then the library will define a filter whose - H5Z_filter_t number is - H5Z_FILTER_DEFLATE. Since this compression method - has the potential for generating compressed data which is larger - than the original, the H5Z_FLAG_OPTIONAL flag - should be turned on so such cases can be handled gracefully by - storing the original data instead of the compressed data. The - cd_nvalues should be one with cd_value[0] - being a compression aggression level between zero and nine, - inclusive (zero is the fastest compression while nine results in - the best compression ratio). - -

A convenience function for adding the - H5Z_FILTER_DEFLATE filter to a pipeline is: - -

-
herr_t H5Pset_deflate (hid_t plist, unsigned - aggression) -
The deflate compression method is added to the end of the - permanent or transient filter pipeline depending on whether - plist is a dataset creation or dataset transfer - property list. The aggression is a number between - zero and nine (inclusive) to indicate the tradeoff between - speed and compression ratio (zero is fastest, nine is best - ratio). -
- -

Even if the zlib isn't detected during - configuration the application can define - H5Z_FILTER_DEFLATE as a permanent filter. If the - filter is marked as optional (as with - H5Pset_deflate()) then it will always fail and be - automatically removed from the pipeline. Applications that read - data will fail only if the data is actually compressed; they - won't fail if H5Z_FILTER_DEFLATE was part of the - permanent output pipeline but was automatically excluded because - it didn't exist when the data was written. - -

zlib can be acquired from - - https://zlib.net. - -

Example

- -

This example shows how to define and register a simple filter - that adds a checksum capability to the data stream. - -

The function that acts as the filter always returns zero - (failure) if the md5() function was not detected at - configuration time (left as an exercise for the reader). - Otherwise the function is broken down to an input and output - half. The output half calculates a checksum, increases the size - of the output buffer if necessary, and appends the checksum to - the end of the buffer. The input half calculates the checksum - on the first part of the buffer and compares it to the checksum - already stored at the end of the buffer. If the two differ then - zero (failure) is returned, otherwise the buffer size is reduced - to exclude the checksum. - -

- - - - -
-


-                  size_t
-                  md5_filter(unsigned int flags, size_t cd_nelmts,
-                  const unsigned int cd_values[], size_t nbytes,
-                  size_t *buf_size, void **buf)
-                  {
-                  #ifdef HAVE_MD5
-                  unsigned char       cksum[16];
-
-                  if (flags & H5Z_REVERSE) {
-                  /* Input */
-                  assert(nbytes>=16);
-                  md5(nbytes-16, *buf, cksum);
-
-                  /* Compare */
-                  if (memcmp(cksum, (char*)(*buf)+nbytes-16, 16)) {
-                  return 0; /*fail*/
-                  }
-
-                  /* Strip off checksum */
-                  return nbytes-16;
-
-                  } else {
-                  /* Output */
-                  md5(nbytes, *buf, cksum);
-
-                  /* Increase buffer size if necessary */
-                  if (nbytes+16>*buf_size) {
-                  *buf_size = nbytes + 16;
-                  *buf = realloc(*buf, *buf_size);
-                  }
-
-                  /* Append checksum */
-                  memcpy((char*)(*buf)+nbytes, cksum, 16);
-                  return nbytes+16;
-                  }
-                  #else
-                  return 0; /*fail*/
-                  #endif
-                  }
-	          
-
- -

Once the filter function is defined it must be registered so - the HDF5 library knows about it. Since we're testing this - filter we choose one of the H5Z_filter_t numbers - from the reserved range. We'll randomly choose 305. - -

-

- - - - -
-


-                  #define FILTER_MD5 305
-                  herr_t status = H5Zregister(FILTER_MD5, "md5 checksum", md5_filter);
-	          
-
- -

Now we can use the filter in a pipeline. We could have added - the filter to the pipeline before defining or registering the - filter as long as the filter was defined and registered by time - we tried to use it (if the filter is marked as optional then we - could have used it without defining it and the library would - have automatically removed it from the pipeline for each chunk - written before the filter was defined and registered). - -

-

- - - - -
-


-                  hid_t dcpl = H5Pcreate(H5P_DATASET_CREATE);
-                  hsize_t chunk_size[3] = {10,10,10};
-                  H5Pset_chunk(dcpl, 3, chunk_size);
-                  H5Pset_filter(dcpl, FILTER_MD5, 0, 0, NULL);
-                  hid_t dset = H5Dcreate(file, "dset", H5T_NATIVE_DOUBLE, space, dcpl);
-	          
-
- -

6. Filter Diagnostics

- -

If the library is compiled with debugging turned on for the H5Z - layer (usually as a result of configure - --enable-debug=z) then filter statistics are printed when - the application exits normally or the library is closed. The - statistics are written to the standard error stream and include - two lines for each filter that was used: one for input and one - for output. The following fields are displayed: - -

-

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Field NameDescription
MethodThis is the name of the method as defined with - H5Zregister() with the characters - "< or ">" prepended to indicate - input or output.
TotalThe total number of bytes processed by the filter - including errors. This is the maximum of the - nbytes argument or the return value. -
ErrorsThis field shows the number of bytes of the Total - column which can be attributed to errors.
User, System, ElapsedThese are the amount of user time, system time, and - elapsed time in seconds spent in the filter function. - Elapsed time is sensitive to system load. These times - may be zero on operating systems that don't support the - required operations.
BandwidthThis is the filter bandwidth which is the total - number of bytes processed divided by elapsed time. - Since elapsed time is subject to system load the - bandwidth numbers cannot always be trusted. - Furthermore, the bandwidth includes bytes attributed to - errors which may significantly taint the value if the - function is able to detect errors without much - expense.
- -

-

- - - - - -
- Example: Filter Statistics -
-

H5Z: filter statistics accumulated ov=
-                  er life of library:
-                  Method     Total  Errors  User  System  Elapsed Bandwidth
-                  ------     -----  ------  ----  ------  ------- ---------
-                  >deflate  160000   40000  0.62    0.74     1.33 117.5 kBs
-                  <deflate  120000       0  0.11    0.00     0.12 1.000 MBs
-	          
-
- -
- - -

Footnote 1: Dataset chunks can be compressed - through the use of filters. Developers should be aware that - reading and rewriting compressed chunked data can result in holes - in an HDF5 file. In time, enough such holes can increase the - file size enough to impair application or library performance - when working with that file. See - - Freespace Management - in the chapter - - Performance Analysis and Issues.

- -
-
-
- - - - diff --git a/develop/_f_m_t1.html b/develop/_f_m_t1.html index 14b3f04cb0a..edf60c54cca 100644 --- a/develop/_f_m_t1.html +++ b/develop/_f_m_t1.html @@ -37,7 +37,7 @@ Logo -
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@@ -3564,8 +3564,8 @@ Elena> "Free-space object" library. Values 256 through 511 have been set aside for use when developing/testing new filters. The remaining values are allocated to specific filters by contacting the - HDF5 Development - Team. + HDF5 development team. + diff --git a/develop/_f_m_t11.html b/develop/_f_m_t11.html index 7648eac32f4..bfa3989f434 100644 --- a/develop/_f_m_t11.html +++ b/develop/_f_m_t11.html @@ -37,7 +37,7 @@ Logo -
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@@ -5681,9 +5681,9 @@ TABLE.list TD { border:none; } 1If you are reading an earlier version of this document, this link may have changed. If the link does not work, use the latest version of this document - on The HDF Group’s website, - - https://support.hdfgroup.org/HDF5/doc/H5.format.html; + on The HDF Group’s website, + + H5.format.html; the link there will always be correct. (Return)

diff --git a/develop/_f_m_t2.html b/develop/_f_m_t2.html index 40055b007cb..105948852a6 100644 --- a/develop/_f_m_t2.html +++ b/develop/_f_m_t2.html @@ -37,7 +37,7 @@ Logo -
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- HDF5 File Format Discussion diff --git a/develop/_f_t_s.html b/develop/_f_t_s.html index 489e36fefa4..58a1233374b 100644 --- a/develop/_f_t_s.html +++ b/develop/_f_t_s.html @@ -37,7 +37,7 @@ Logo -
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@@ -186,9 +186,9 @@ Tracking Free Space in HDF5 Files

Discussion
Free space tracking is supported only in HDF5 versions 1.10.x and higher. This has implications for the accessibility of your HDF5 files and should be considered carefully. If compatibility with previous versions of HDF5 must be maintained, space reclamation via h5repack might be an option.
The file space strategy H5F_FSPACE_STRATEGY_FSM_AGGR is not the only option that supports free-space tracking. H5F_FSPACE_STRATEGY_PAGE is another option, which adds paged allocation and is used most effectively with page buffering.
For an in-depth account of HDF5 file space management, paged-allocation, and page buffering, see the following documents:
See Also
See Maintaining Compatibility with other HDF5 Library Versions for HDF5 compatibility implications.
diff --git a/develop/_files_8dox.html b/develop/_files_8dox.html index 394d6316556..6e4f72866e7 100644 --- a/develop/_files_8dox.html +++ b/develop/_files_8dox.html @@ -37,7 +37,7 @@ Logo -
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diff --git a/develop/_getting_started.html b/develop/_getting_started.html index 07a41885101..27e678c3404 100644 --- a/develop/_getting_started.html +++ b/develop/_getting_started.html @@ -37,7 +37,7 @@ Logo -
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@@ -137,7 +137,7 @@ The HDF Group Resources

The HDF Group Tutorials and Examples

-

These tutorials and examples are available for learning about the HDF5 High Level APIs, tools, Parallel HDF5, and the HDF5-1.10 VDS and SWMR new features:

+

These tutorials and examples are available for learning about the HDF5 High Level APIs, tools, Parallel HDF5, and the VDS and SWMR features:

@@ -150,7 +150,7 @@ The HDF Group Tutorials and Examples - diff --git a/develop/_glossary_8dox.html b/develop/_glossary_8dox.html index 1f4cbc073ad..402763984f6 100644 --- a/develop/_glossary_8dox.html +++ b/develop/_glossary_8dox.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_8java.html b/develop/_h5_8java.html index 347ea0d0778..616c2479242 100644 --- a/develop/_h5_8java.html +++ b/develop/_h5_8java.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5__buildiface_8_f90.html b/develop/_h5__buildiface_8_f90.html index 7b44b11bfc3..7eaaad37327 100644 --- a/develop/_h5__buildiface_8_f90.html +++ b/develop/_h5__buildiface_8_f90.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5__ff_8_f90.html b/develop/_h5__ff_8_f90.html index 7e6d0e4353d..0baf966abbe 100644 --- a/develop/_h5__ff_8_f90.html +++ b/develop/_h5__ff_8_f90.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5__ih__info__t_8java.html b/develop/_h5__ih__info__t_8java.html index 37aa14709e0..f0cb66fb017 100644 --- a/develop/_h5__ih__info__t_8java.html +++ b/develop/_h5__ih__info__t_8java.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5__u_g.html b/develop/_h5__u_g.html index 8f6549dd888..f340f206b71 100644 --- a/develop/_h5__u_g.html +++ b/develop/_h5__u_g.html @@ -37,7 +37,7 @@ @@ -227,7 +227,7 @@ Closing an Object
herr_t H5Sclose(hid_t space_id)
Releases and terminates access to a dataspace.
herr_t H5Tclose(hid_t type_id)
Releases a datatype.

There is a long list of HDF5 library items that return a unique identifier when the item is created or opened. Each time that one of these items is opened, a unique identifier is returned. Closing a file does not mean that the groups, datasets, or other open items are also closed. Each opened item must be closed separately.

-

For more information,

See also
Using Identifiers in the HDF5 Application Developer's Guide under General Topics in HDF5.
+

For more information,

See also
Using Identifiers in the HDF5 Application Developer's Guide under General Topics in HDF5.

How Closing a File Effects Other Open Structural Elements

Every structural element in an HDF5 file can be opened, and these elements can be opened more than once. Elements range in size from the entire file down to attributes. When an element is opened, the HDF5 library returns a unique identifier to the application. Every element that is opened must be closed. If an element was opened more than once, each identifier that was returned to the application must be closed. For example, if a dataset was opened twice, both dataset identifiers must be released (closed) before the dataset can be considered closed. Suppose an application has opened a file, a group in the file, and two datasets in the group. In order for the file to be totally closed, the file, group, and datasets must each be closed. Closing the file before the group or the datasets will not affect the state of the group or datasets: the group and datasets will still be open.

There are several exceptions to the above general rule. One is when the H5close function is used. H5close causes a general shutdown of the library: all data is written to disk, all identifiers are closed, and all memory used by the library is cleaned up. Another exception occurs on parallel processing systems. Suppose on a parallel system an application has opened a file, a group in the file, and two datasets in the group. If the application uses the H5Fclose function to close the file, the call will fail with an error. The open group and datasets must be closed before the file can be closed. A third exception is when the file access property list includes the property H5F_CLOSE_STRONG. This property closes any open elements when the file is closed with H5Fclose. For more information, see the H5Pset_fclose_degree function in the HDF5 Reference Manual.

diff --git a/develop/_h5_a__info__t_8java.html b/develop/_h5_a__info__t_8java.html index 6a5c68614a6..39cdd3816a3 100644 --- a/develop/_h5_a__info__t_8java.html +++ b/develop/_h5_a__info__t_8java.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_a__iterate__cb_8java.html b/develop/_h5_a__iterate__cb_8java.html index db78cd00855..feef3ee3527 100644 --- a/develop/_h5_a__iterate__cb_8java.html +++ b/develop/_h5_a__iterate__cb_8java.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_a__iterate__t_8java.html b/develop/_h5_a__iterate__t_8java.html index 5edd67053bb..f05d4422516 100644 --- a/develop/_h5_a__iterate__t_8java.html +++ b/develop/_h5_a__iterate__t_8java.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_a__u_g.html b/develop/_h5_a__u_g.html index ebafaf1ce63..d34d03cd441 100644 --- a/develop/_h5_a__u_g.html +++ b/develop/_h5_a__u_g.html @@ -37,7 +37,7 @@ @@ -145,7 +145,7 @@ Introduction

Attribute Function Summaries

-
See also
Attributes (H5A) reference manual
+

see Attributes (H5A) reference manual

Programming Model for Attributes

The figure below shows the UML model for an HDF5 attribute and its associated dataspace and datatype.

Using the High Level API The high-level HDF5 library includes several sets of convenience and standard-use APIs to facilitate common HDF5 operations.
HDF5-1.10 New Features
    +
New Features since HDF5-1.10 diff --git a/develop/_getting_started_8dox.html b/develop/_getting_started_8dox.html index 0a184f910d8..1a10ef6cc73 100644 --- a/develop/_getting_started_8dox.html +++ b/develop/_getting_started_8dox.html @@ -37,7 +37,7 @@
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
-
HDF5 1.15.0 +
HDF5 1.15.0.bca2806
API Reference
@@ -183,160 +183,6 @@ Specify the attribute creation property list
  • Close the attribute
  • Close the primary data object (if appropriate)
  • -
    - - - - - - - - -
    CreateUpdate
    14 {
    -
    15 __label__ fail_acpl, fail_attr, fail_file;
    -
    16 hid_t file, acpl, fspace, attr;
    -
    17
    -
    18 unsigned mode = H5F_ACC_TRUNC;
    -
    19 char file_name[] = "f1.h5";
    -
    20 // attribute names can be arbitrary Unicode strings
    -
    21 char attr_name[] = "Χαρακτηριστικό";
    -
    22
    -
    23 if ((file = H5Fcreate(file_name, mode, H5P_DEFAULT, H5P_DEFAULT)) == H5I_INVALID_HID) {
    -
    24 ret_val = EXIT_FAILURE;
    -
    25 goto fail_file;
    -
    26 }
    - -
    28 ret_val = EXIT_FAILURE;
    -
    29 goto fail_acpl;
    -
    30 }
    -
    31 // use UTF-8 encoding for the attribute name
    -
    32 if (H5Pset_char_encoding(acpl, H5T_CSET_UTF8) < 0) {
    -
    33 ret_val = EXIT_FAILURE;
    -
    34 goto fail_fspace;
    -
    35 }
    -
    36 // create a scalar (singleton) attribute
    -
    37 if ((fspace = H5Screate(H5S_SCALAR)) == H5I_INVALID_HID) {
    -
    38 ret_val = EXIT_FAILURE;
    -
    39 goto fail_fspace;
    -
    40 }
    -
    41 // create an attribute on the root group
    -
    42 if ((attr = H5Acreate2(file, attr_name, H5T_STD_I32LE, fspace, acpl, H5P_DEFAULT)) ==
    - -
    44 ret_val = EXIT_FAILURE;
    -
    45 goto fail_attr;
    -
    46 }
    -
    47
    -
    48 H5Aclose(attr);
    -
    49fail_attr:
    -
    50 H5Sclose(fspace);
    -
    51fail_fspace:
    -
    52 H5Pclose(acpl);
    -
    53fail_acpl:
    -
    54 H5Fclose(file);
    -
    55fail_file:;
    -
    56 }
    -
    #define H5F_ACC_TRUNC
    Definition H5Fpublic.h:50
    -
    int64_t hid_t
    Definition H5Ipublic.h:60
    -
    #define H5I_INVALID_HID
    Definition H5Ipublic.h:75
    -
    #define H5P_ATTRIBUTE_CREATE
    Definition H5Ppublic.h:112
    -
    #define H5P_DEFAULT
    Definition H5Ppublic.h:228
    -
    @ H5S_SCALAR
    Definition H5Spublic.h:77
    -
    @ H5T_CSET_UTF8
    Definition H5Tpublic.h:96
    -
    herr_t H5Pset_char_encoding(hid_t plist_id, H5T_cset_t encoding)
    Sets the character encoding used to encode link and attribute names.
    -
    hid_t H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id)
    Creates an attribute attached to a specified object.
    -
    herr_t H5Aclose(hid_t attr_id)
    Closes the specified attribute.
    -
    herr_t H5Fclose(hid_t file_id)
    Terminates access to an HDF5 file.
    -
    hid_t H5Fcreate(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id)
    Creates an HDF5 file.
    -
    herr_t H5Sclose(hid_t space_id)
    Releases and terminates access to a dataspace.
    -
    hid_t H5Screate(H5S_class_t type)
    Creates a new dataspace of a specified type.
    -
    #define H5T_STD_I32LE
    Definition H5Tpublic.h:323
    -
    herr_t H5Pclose(hid_t plist_id)
    Terminates access to a property list.
    -
    hid_t H5Pcreate(hid_t cls_id)
    Creates a new property list as an instance of a property list class.
    -
    91 {
    -
    92 __label__ fail_attr, fail_file;
    -
    93 hid_t file, attr;
    -
    94
    -
    95 unsigned mode = H5F_ACC_RDWR;
    -
    96 char file_name[] = "f1.h5";
    -
    97 char attr_name[] = "Χαρακτηριστικό";
    -
    98 int value = 1234;
    -
    99
    -
    100 if ((file = H5Fopen(file_name, mode, H5P_DEFAULT)) == H5I_INVALID_HID) {
    -
    101 ret_val = EXIT_FAILURE;
    -
    102 goto fail_file;
    -
    103 }
    -
    104 if ((attr = H5Aopen(file, attr_name, H5P_DEFAULT)) == H5I_INVALID_HID) {
    -
    105 ret_val = EXIT_FAILURE;
    -
    106 goto fail_attr;
    -
    107 }
    -
    108 // update the attribute value
    -
    109 if (H5Awrite(attr, H5T_NATIVE_INT, &value) < 0)
    -
    110 ret_val = EXIT_FAILURE;
    -
    111
    -
    112 H5Aclose(attr);
    -
    113fail_attr:
    -
    114 H5Fclose(file);
    -
    115fail_file:;
    -
    116 }
    -
    #define H5F_ACC_RDWR
    Definition H5Fpublic.h:49
    -
    hid_t H5Aopen(hid_t obj_id, const char *attr_name, hid_t aapl_id)
    Opens an attribute for an object specified by object identifier and attribute name.
    -
    herr_t H5Awrite(hid_t attr_id, hid_t type_id, const void *buf)
    Writes data to an attribute.
    -
    hid_t H5Fopen(const char *filename, unsigned flags, hid_t fapl_id)
    Opens an existing HDF5 file.
    -
    #define H5T_NATIVE_INT
    Definition H5Tpublic.h:780
    -
    ReadDelete
    60 {
    -
    61 __label__ fail_attr, fail_file;
    -
    62 hid_t file, attr;
    -
    63
    -
    64 unsigned mode = H5F_ACC_RDONLY;
    -
    65 char file_name[] = "f1.h5";
    -
    66 char attr_name[] = "Χαρακτηριστικό";
    -
    67 int value;
    -
    68
    -
    69 if ((file = H5Fopen(file_name, mode, H5P_DEFAULT)) == H5I_INVALID_HID) {
    -
    70 ret_val = EXIT_FAILURE;
    -
    71 goto fail_file;
    -
    72 }
    -
    73 if ((attr = H5Aopen(file, attr_name, H5P_DEFAULT)) == H5I_INVALID_HID) {
    -
    74 ret_val = EXIT_FAILURE;
    -
    75 goto fail_attr;
    -
    76 }
    -
    77 // read the attribute value
    -
    78 if (H5Aread(attr, H5T_NATIVE_INT, &value) < 0)
    -
    79 ret_val = EXIT_FAILURE;
    -
    80
    -
    81 // do something w/ the attribute value
    -
    82
    -
    83 H5Aclose(attr);
    -
    84fail_attr:
    -
    85 H5Fclose(file);
    -
    86fail_file:;
    -
    87 }
    -
    #define H5F_ACC_RDONLY
    Definition H5Fpublic.h:48
    -
    herr_t H5Aread(hid_t attr_id, hid_t type_id, void *buf)
    Reads the value of an attribute.
    -
    120 {
    -
    121 __label__ fail_attr, fail_file;
    -
    122 hid_t file;
    -
    123
    -
    124 unsigned mode = H5F_ACC_RDWR;
    -
    125 char file_name[] = "f1.h5";
    -
    126 char attr_name[] = "Χαρακτηριστικό";
    -
    127
    -
    128 if ((file = H5Fopen(file_name, mode, H5P_DEFAULT)) == H5I_INVALID_HID) {
    -
    129 ret_val = EXIT_FAILURE;
    -
    130 goto fail_file;
    -
    131 }
    -
    132 // delete the attribute
    -
    133 if (H5Adelete(file, attr_name) < 0) {
    -
    134 ret_val = EXIT_FAILURE;
    -
    135 goto fail_attr;
    -
    136 }
    -
    137
    -
    138fail_attr:
    -
    139 H5Fclose(file);
    -
    140fail_file:;
    -
    141 }
    -
    herr_t H5Adelete(hid_t loc_id, const char *attr_name)
    Deletes an attribute from a specified location.
    -

    Working with Attributes

    @@ -352,12 +198,15 @@ Creating, Writing, and Reading Attributes

    To create an attribute, call H5Acreate:

    hid_t H5Acreate (hid_t loc_id, const char *name,
    hid_t type_id, hid_t space_id, hid_t create_plist,
    hid_t access_plist)
    +
    int64_t hid_t
    Definition H5Ipublic.h:60
    #define H5Acreate
    Definition H5version.h:868

    loc_id identifies the object (dataset, group, or committed datatype) to which the attribute is to be attached. name, type_id, space_id, and create_plist convey, respectively, the attribute's name, datatype, dataspace, and attribute creation property list. The attribute's name must be locally unique: it must be unique within the context of the object to which it is attached.

    H5Acreate creates the attribute in memory. The attribute does not exist in the file until H5Awrite writes it there.

    To write or read an attribute, call H5Awrite or H5Aread, respectively:

    herr_t H5Awrite (hid_t attr_id, hid_t mem_type_id, const void *buf)
    herr_t H5Aread (hid_t attr_id, hid_t mem_type_id, void *buf)
    int herr_t
    Definition H5public.h:239
    +
    herr_t H5Aread(hid_t attr_id, hid_t type_id, void *buf)
    Reads the value of an attribute.
    +
    herr_t H5Awrite(hid_t attr_id, hid_t type_id, const void *buf)
    Writes data to an attribute.

    attr_id identifies the attribute while mem_type_id identifies the in-memory datatype of the attribute data.

    H5Awrite writes the attribute data from the buffer buf to the file. H5Aread reads attribute data from the file into buf.

    The HDF5 Library converts the metadata between the in-memory datatype, mem_type_id, and the in-file datatype, defined when the attribute was created, without user intervention.

    @@ -406,12 +255,14 @@ Iterating across an Object's Attributes Deleting an Attribute

    Once an attribute has outlived its usefulness or is no longer appropriate, it may become necessary to delete it.

    To delete an attribute, call H5Adelete

    herr_t H5Adelete (hid_t loc_id, const char *name)
    +
    herr_t H5Adelete(hid_t loc_id, const char *attr_name)
    Deletes an attribute from a specified location.

    H5Adelete removes the attribute name from the group, dataset, or committed datatype specified in loc_id.

    H5Adelete must not be called if there are any open attribute identifiers on the object loc_id. Such a call can cause the internal attribute indexes to change; future writes to an open attribute would then produce unintended results.

    Closing an Attribute

    As is the case with all HDF5 objects, once access to an attribute it is no longer needed, that attribute must be closed. It is best practice to close it as soon as practicable; it is mandatory that it be closed prior to the H5close call closing the HDF5 Library.

    To close an attribute, call H5Aclose

    +
    herr_t H5Aclose(hid_t attr_id)
    Closes the specified attribute.

    H5Aclose closes the specified attribute by terminating access to its identifier, attr_id.

    Special Issues

    @@ -474,6 +325,21 @@ Special Issues
    54 H5Fclose(file);
    55fail_file:;
    56 }
    +
    #define H5F_ACC_TRUNC
    Definition H5Fpublic.h:50
    +
    #define H5I_INVALID_HID
    Definition H5Ipublic.h:75
    +
    #define H5P_ATTRIBUTE_CREATE
    Definition H5Ppublic.h:112
    +
    #define H5P_DEFAULT
    Definition H5Ppublic.h:228
    +
    @ H5S_SCALAR
    Definition H5Spublic.h:77
    +
    @ H5T_CSET_UTF8
    Definition H5Tpublic.h:96
    +
    herr_t H5Pset_char_encoding(hid_t plist_id, H5T_cset_t encoding)
    Sets the character encoding used to encode link and attribute names.
    +
    hid_t H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id)
    Creates an attribute attached to a specified object.
    +
    herr_t H5Fclose(hid_t file_id)
    Terminates access to an HDF5 file.
    +
    hid_t H5Fcreate(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id)
    Creates an HDF5 file.
    +
    herr_t H5Sclose(hid_t space_id)
    Releases and terminates access to a dataspace.
    +
    hid_t H5Screate(H5S_class_t type)
    Creates a new dataspace of a specified type.
    +
    #define H5T_STD_I32LE
    Definition H5Tpublic.h:323
    +
    herr_t H5Pclose(hid_t plist_id)
    Terminates access to a property list.
    +
    hid_t H5Pcreate(hid_t cls_id)
    Creates a new property list as an instance of a property list class.

    Large Attributes Stored in a Separate Dataset

    diff --git a/develop/_h5_a_c-cache-config-t.html b/develop/_h5_a_c-cache-config-t.html index 2891a36a17c..faf75285958 100644 --- a/develop/_h5_a_c-cache-config-t.html +++ b/develop/_h5_a_c-cache-config-t.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_a_c__cache__config__t_8dox.html b/develop/_h5_a_c__cache__config__t_8dox.html index 244c594f01b..55143db86a2 100644 --- a/develop/_h5_a_c__cache__config__t_8dox.html +++ b/develop/_h5_a_c__cache__config__t_8dox.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_a_c__cache__config__t_8java.html b/develop/_h5_a_c__cache__config__t_8java.html index 9f3507dc893..2f2c917c48f 100644 --- a/develop/_h5_a_c__cache__config__t_8java.html +++ b/develop/_h5_a_c__cache__config__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_a_cmodule_8h.html b/develop/_h5_a_cmodule_8h.html index da2556594a3..a6956d90be6 100644 --- a/develop/_h5_a_cmodule_8h.html +++ b/develop/_h5_a_cmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_a_cpublic_8h.html b/develop/_h5_a_cpublic_8h.html index bd9d425e50f..86c6ab94430 100644 --- a/develop/_h5_a_cpublic_8h.html +++ b/develop/_h5_a_cpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_abstract_ds_8h.html b/develop/_h5_abstract_ds_8h.html index 5f1d58f1d49..ac5cf5083e0 100644 --- a/develop/_h5_abstract_ds_8h.html +++ b/develop/_h5_abstract_ds_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_aff_8_f90.html b/develop/_h5_aff_8_f90.html index 64620c9e3f3..8e463eb6df7 100644 --- a/develop/_h5_aff_8_f90.html +++ b/develop/_h5_aff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_amodule_8h.html b/develop/_h5_amodule_8h.html index 97f9d095b56..1da5973c593 100644 --- a/develop/_h5_amodule_8h.html +++ b/develop/_h5_amodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_apublic_8h.html b/develop/_h5_apublic_8h.html index 75cd4124579..56f8fab993b 100644 --- a/develop/_h5_apublic_8h.html +++ b/develop/_h5_apublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_array_type_8h.html b/develop/_h5_array_type_8h.html index 186647884ac..3eb78fee5a3 100644 --- a/develop/_h5_array_type_8h.html +++ b/develop/_h5_array_type_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_atom_type_8h.html b/develop/_h5_atom_type_8h.html index 470d2079a8c..958a68c9b0b 100644 --- a/develop/_h5_atom_type_8h.html +++ b/develop/_h5_atom_type_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_attribute_8h.html b/develop/_h5_attribute_8h.html index a9b285be1ef..6bf8c72b5dc 100644 --- a/develop/_h5_attribute_8h.html +++ b/develop/_h5_attribute_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_b2module_8h.html b/develop/_h5_b2module_8h.html index d318a6bcb16..4902c724e1a 100644 --- a/develop/_h5_b2module_8h.html +++ b/develop/_h5_b2module_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_bmodule_8h.html b/develop/_h5_bmodule_8h.html index a6feacd6861..5d3f57fbba4 100644 --- a/develop/_h5_bmodule_8h.html +++ b/develop/_h5_bmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_c_xmodule_8h.html b/develop/_h5_c_xmodule_8h.html index 2891d049647..e91189895b1 100644 --- a/develop/_h5_c_xmodule_8h.html +++ b/develop/_h5_c_xmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_cmodule_8h.html b/develop/_h5_cmodule_8h.html index c10f6d3d86e..a13df402dce 100644 --- a/develop/_h5_cmodule_8h.html +++ b/develop/_h5_cmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_common_f_g_8h.html b/develop/_h5_common_f_g_8h.html index 6d872420cd5..626e4a93988 100644 --- a/develop/_h5_common_f_g_8h.html +++ b/develop/_h5_common_f_g_8h.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_d__append__cb_8java.html b/develop/_h5_d__append__cb_8java.html index 59ce4c6f23a..61a5987c222 100644 --- a/develop/_h5_d__append__cb_8java.html +++ b/develop/_h5_d__append__cb_8java.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_d__append__t_8java.html b/develop/_h5_d__append__t_8java.html index eb8c025eef1..683b71aec63 100644 --- a/develop/_h5_d__append__t_8java.html +++ b/develop/_h5_d__append__t_8java.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_d__iterate__cb_8java.html b/develop/_h5_d__iterate__cb_8java.html index 42d0a7a41d8..88bdb7ebe91 100644 --- a/develop/_h5_d__iterate__cb_8java.html +++ b/develop/_h5_d__iterate__cb_8java.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_d__iterate__t_8java.html b/develop/_h5_d__iterate__t_8java.html index e3a2df1707a..5dbd314c8d3 100644 --- a/develop/_h5_d__iterate__t_8java.html +++ b/develop/_h5_d__iterate__t_8java.html @@ -37,7 +37,7 @@ Logo -
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    @@ -1043,7 +1043,7 @@ Releasing Memory Resources

    The system resources required for HDF5 objects such as datasets, datatypes, and dataspaces should be released once access to the object is no longer needed. This is accomplished via the appropriate close function. This is not unique to datasets but a general requirement when working with the HDF5 Library; failure to close objects will result in resource leaks.

    In the case where a dataset is created or data has been transferred, there are several objects that must be closed. These objects include datasets, datatypes, dataspaces, and property lists.

    The application program must free any memory variables and buffers it allocates. When accessing data from the file, the amount of memory required can be determined by calculating the size of the memory datatype and the number of elements in the memory selection.

    -

    Variable-length data are organized in two or more areas of memory. For more information,

    See also
    Variable-length Datatypes.
    +

    Variable-length data are organized in two or more areas of memory. For more information, see Variable-length Datatypes.

    When writing data, the application creates an array of vl_info_t which contains pointers to the elements. The elements might be, for example, strings. In the file, the variable-length data is stored in two parts: a heap with the variable-length values of the data elements and an array of vl_info_t elements. When the data is read, the amount of memory required for the heap can be determined with the H5Dvlen_get_buf_size call.

    The data transfer property may be used to set a custom memory manager for allocating variable- length data for a H5Dread. This is set with the H5Pset_vlen_mem_manager call. To free the memory for variable-length data, it is necessary to visit each element, free the variable-length data, and reset the element. The application must free the memory it has allocated. For memory allocated by the HDF5 Library during a read, the H5Dvlen_reclaim function can be used to perform this operation.

    @@ -1921,7 +1921,7 @@ Using the SZip Filter

    See The HDF Group website for further information regarding the SZip filter.

    Using Dynamically-Loadable Filters

    -
    See also
    HDF5 Filter Plugins for further information regarding the dynamically-loadable filters.
    +

    see HDF5 Filter Plugins for further information regarding the dynamically-loadable filters.

    HDF has a filter plugin repository of useful third-party plugins that can used

    diff --git a/develop/_h5_d_m__u_g.html b/develop/_h5_d_m__u_g.html index 220262830d3..dab4a66f00c 100644 --- a/develop/_h5_d_m__u_g.html +++ b/develop/_h5_d_m__u_g.html @@ -37,7 +37,7 @@ @@ -150,7 +150,9 @@ The library, the application program, and other modules

    It is important to realize that each of the software components manages data using models and data structures that are appropriate to the component. When data is passed between layers (during storage or retrieval), it is transformed from one representation to another. The figure below suggests some of the kinds of data structures used in the different layers.

    The Application Program uses data structures that represent the problem and algorithms including variables, tables, arrays, and meshes among other data structures. Depending on its design and function, an application may have quite a few different kinds of data structures and different numbers and sizes of objects.

    The HDF5 Library implements the objects of the HDF5 abstract data model. Some of these objects include groups, datasets, and attributes. The application program maps the application data structures to a hierarchy of HDF5 objects. Each application will create a mapping best suited to its purposes.

    -

    The objects of the HDF5 abstract data model are mapped to the objects of the HDF5 storage model, and stored in a storage medium. The stored objects include header blocks, free lists, data blocks, B-trees, and other objects. Each group or dataset is stored as one or more header and data blocks.

    See also
    HDF5 File Format Specification for more information on how these objects are organized. The HDF5 library can also use other libraries and modules such as compression.
    +

    The objects of the HDF5 abstract data model are mapped to the objects of the HDF5 storage model, and stored in a storage medium. The stored objects include header blocks, free lists, data blocks, B-trees, and other objects. Each group or dataset is stored as one or more header and data blocks.

    +

    For more information on how these objects are organized; see HDF5 File Format Specification

    +

    The HDF5 library can also use other libraries and modules such as compression.

    FilterSetFilter Params
    -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
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    @@ -375,7 +377,7 @@ Level 2C: Data object data storage Concrete Storage Model

    The HDF5 file format defines an abstract linear address space. This can be implemented in different storage media such as a single file or multiple files on disk or in memory. The HDF5 Library defines an open interface called the Virtual File Layer (VFL). The VFL allows different concrete storage models to be selected.

    The VFL defines an abstract model, an API for random access storage, and an API to plug in alternative VFL driver modules. The model defines the operations that the VFL driver must and may support, and the plug-in API enables the HDF5 library to recognize the driver and pass it control and data.

    -

    A number of VFL drivers have been defined in the HDF5 library. Some work with a single file, and some work with multiple files split in various ways. Some work in serial computing environments, and some work in parallel computing environments. Most work with disk copies of HDF5 files, but one works with a memory copy. These drivers are listed in the Supported file drivers table.

    +

    A number of VFL drivers have been defined in the HDF5 library. Some work with a single file, and some work with multiple files split in various ways. Some work in serial computing environments, and some work in parallel computing environments. Most work with disk copies of HDF5 files, but one works with a memory copy. These drivers are listed in the Supported file drivers table.

    See also
    Alternate File Storage Layouts and Low-level File Drivers.

    Each driver isolates the details of reading and writing storage so that the rest of the HDF5 library and user program can be almost the same for different storage methods. The exception to this rule is that some VFL drivers need information from the calling application. This information is passed using property lists. For example, the Parallel driver requires certain control information that must be provided by the application.

    diff --git a/develop/_h5_d_o__u_g.html b/develop/_h5_d_o__u_g.html index 291521830bb..2e346c9ad2e 100644 --- a/develop/_h5_d_o__u_g.html +++ b/develop/_h5_d_o__u_g.html @@ -37,7 +37,7 @@

    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_d_o__u_g.html',''); initResizable(
    HDF5 High Level Optimizations
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction
    diff --git a/develop/_h5_d_off_8_f90.html b/develop/_h5_d_off_8_f90.html index d0c6d3530cf..d0bba7770d9 100644 --- a/develop/_h5_d_off_8_f90.html +++ b/develop/_h5_d_off_8_f90.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_d_opublic_8h.html b/develop/_h5_d_opublic_8h.html index 096f87461db..94a890adc57 100644 --- a/develop/_h5_d_opublic_8h.html +++ b/develop/_h5_d_opublic_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_d_s__u_g.html b/develop/_h5_d_s__u_g.html index 91fb5f36bee..a8048781cf9 100644 --- a/develop/_h5_d_s__u_g.html +++ b/develop/_h5_d_s__u_g.html @@ -37,7 +37,7 @@ @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_d_s__u_g.html',''); initResizable(
    HDF5 High Level Dimension Scales
    -
    Todo:
    Under Construction
    +
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    Under Construction
    diff --git a/develop/_h5_d_sff_8_f90.html b/develop/_h5_d_sff_8_f90.html index 98efd8b7a09..d5570d6cee6 100644 --- a/develop/_h5_d_sff_8_f90.html +++ b/develop/_h5_d_sff_8_f90.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_d_spublic_8h.html b/develop/_h5_d_spublic_8h.html index 7d8ce8bd846..c2e69661f0f 100644 --- a/develop/_h5_d_spublic_8h.html +++ b/develop/_h5_d_spublic_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_dacc_prop_8h.html b/develop/_h5_dacc_prop_8h.html index 924599c83d6..a261e13bdeb 100644 --- a/develop/_h5_dacc_prop_8h.html +++ b/develop/_h5_dacc_prop_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_data_set_8h.html b/develop/_h5_data_set_8h.html index 05ed2167d10..8605bd1bb61 100644 --- a/develop/_h5_data_set_8h.html +++ b/develop/_h5_data_set_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_data_space_8h.html b/develop/_h5_data_space_8h.html index e8038ec4af0..5a30977854d 100644 --- a/develop/_h5_data_space_8h.html +++ b/develop/_h5_data_space_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_data_type_8h.html b/develop/_h5_data_type_8h.html index 0d44a738726..d8bd1f9de89 100644 --- a/develop/_h5_data_type_8h.html +++ b/develop/_h5_data_type_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_dcreat_prop_8h.html b/develop/_h5_dcreat_prop_8h.html index a390212d193..40274b8363f 100644 --- a/develop/_h5_dcreat_prop_8h.html +++ b/develop/_h5_dcreat_prop_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_dff_8_f90.html b/develop/_h5_dff_8_f90.html index 35a51b7e0b9..4f678c739b7 100644 --- a/develop/_h5_dff_8_f90.html +++ b/develop/_h5_dff_8_f90.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_dmodule_8h.html b/develop/_h5_dmodule_8h.html index 2e0ad19cedc..2da09a37738 100644 --- a/develop/_h5_dmodule_8h.html +++ b/develop/_h5_dmodule_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_dpublic_8h.html b/develop/_h5_dpublic_8h.html index 5286a6b0027..fc448a46163 100644 --- a/develop/_h5_dpublic_8h.html +++ b/develop/_h5_dpublic_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_dxfer_prop_8h.html b/develop/_h5_dxfer_prop_8h.html index 7ab4e6c5e3e..85def257a65 100644 --- a/develop/_h5_dxfer_prop_8h.html +++ b/develop/_h5_dxfer_prop_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_e__error2__t_8java.html b/develop/_h5_e__error2__t_8java.html index 1e819a451fc..ebbb9a6fc51 100644 --- a/develop/_h5_e__error2__t_8java.html +++ b/develop/_h5_e__error2__t_8java.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_e__u_g.html b/develop/_h5_e__u_g.html index 736733c15b2..a31776d518d 100644 --- a/develop/_h5_e__u_g.html +++ b/develop/_h5_e__u_g.html @@ -37,7 +37,7 @@ @@ -133,7 +133,7 @@ Introduction

    The old API is similar to functionality discussed in Basic Error Handling Operations. The functionality discussed in Advanced Error Handling Operations,the ability of allowing applications to add their own error records, is the new design for the Error Handling API.

    Error Handling Function Summaries

    -
    See also
    Error Handling (H5E) reference manual
    +

    see Error Handling (H5E) reference manual

    Programming Model for Error Handling

    This section is under construction.

    @@ -142,20 +142,13 @@ Basic Error Handling Operations

    Let us first try to understand the error stack. An error stack is a collection of error records. Error records can be pushed onto or popped off the error stack. By default, when an error occurs deep within the HDF5 Library, an error record is pushed onto an error stack and that function returns a failure indication. Its caller detects the failure, pushes another record onto the stack, and returns a failure indication. This continues until the API function called by the application returns a failure indication. The next API function being called will reset the error stack. All HDF5 Library error records belong to the same error class. For more information, see Advanced Error Handling Operations.

    Error Stack and Error Message

    -

    In normal circumstances, an error causes the stack to be printed on the standard error stream automatically. This automatic error stack is the library's default stack. For all the functions in this section, whenever an error stack ID is needed as a parameter, H5E_DEFAULT can be used to indicate the library's default stack. The first error record of the error stack, number #000, is produced by the API function itself and is usually sufficient to indicate to the application what went wrong.

    Data structures in different layers
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    - - - -
    Example: An Error Message

    -

    If an application calls H5Tclose on a predefined datatype then the following message is printed on the standard error stream. This is a simple error that has only one component, the API function; other errors may have many components.

    -

    -HDF5-DIAG: Error detected in HDF5 (1.10.9) thread 0.
    -   #000: H5T.c line ### in H5Tclose(): predefined datatype
    -      major: Function argument
    -      minor: Bad value
    -        

    -
    -

    In the example above, we can see that an error record has a major message and a minor message. A major message generally indicates where the error happens. The location can be a dataset or a dataspace, for example. A minor message explains further details of the error. An example is “unable to open file”. Another specific detail about the error can be found at the end of the first line of each error record. This error description is usually added by the library designer to tell what exactly goes wrong. In the example above, the “predefined datatype” is an error description.

    +

    In normal circumstances, an error causes the stack to be printed on the standard error stream automatically. This automatic error stack is the library's default stack. For all the functions in this section, whenever an error stack ID is needed as a parameter, H5E_DEFAULT can be used to indicate the library's default stack. The first error record of the error stack, number #000, is produced by the API function itself and is usually sufficient to indicate to the application what went wrong.

    +

    If an application calls H5Tclose on a predefined datatype then the following message is printed on the standard error stream. This is a simple error that has only one component, the API function; other errors may have many components.

    +

    An Error Message Example

    HDF5-DIAG: Error detected in HDF5 (1.10.9) thread 0.
    +
    #000: H5T.c line ### in H5Tclose(): predefined datatype
    +
    major: Function argument
    +
    minor: Bad value
    +

    In the example above, we can see that an error record has a major message and a minor message. A major message generally indicates where the error happens. The location can be a dataset or a dataspace, for example. A minor message explains further details of the error. An example is “unable to open file”. Another specific detail about the error can be found at the end of the first line of each error record. This error description is usually added by the library designer to tell what exactly goes wrong. In the example above, the “predefined datatype” is an error description.

    Print and Clear an Error Stack

    Besides the automatic error report, the error stack can also be printed and cleared by the functions H5Eprint2 and H5Eclear2. If an application wishes to make explicit calls to H5Eprint2 to print the error stack, the automatic printing should be turned off to prevent error messages from being displayed twice (see H5Eset_auto2).

    @@ -178,28 +171,28 @@ Mute Error Stack
    #define H5Eget_auto
    Definition H5version.h:925

    The function above returns the current settings for the automatic error stack traversal function, func, and its data, client_data. If either or both of the arguments are null, then the value is not returned.

    An application can temporarily turn off error messages while “probing” a function. See the example below.

    -

    Example: Turn off error messages while probing a function

    *** Save old error handler ***
    -
    H5E_auto2_t oldfunc;
    -
    void *old_client_data;
    -
    H5Eget_auto2(error_stack, &old_func, &old_client_data);
    -
    *** Turn off error handling ***
    -
    H5Eset_auto2(error_stack, NULL, NULL);
    -
    *** Probe. Likely to fail, but that's okay ***
    -
    status = H5Fopen (......);
    -
    *** Restore previous error handler ***
    -
    H5Eset_auto2(error_stack, old_func, old_client_data);
    +

    Example: Turn off error messages while probing a function

    // Save old error handler
    +
    H5E_auto2_t oldfunc;
    +
    void *old_client_data;
    +
    H5Eget_auto2(error_stack, &old_func, &old_client_data);
    +
    // Turn off error handling
    +
    H5Eset_auto2(error_stack, NULL, NULL);
    +
    // Probe. Likely to fail, but that's okay
    +
    status = H5Fopen (......);
    +
    // Restore previous error handler
    +
    H5Eset_auto2(error_stack, old_func, old_client_data);
    herr_t(* H5E_auto2_t)(hid_t estack, void *client_data)
    Callback function for H5Eset_auto2()
    Definition H5Epublic.h:199
    herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data)
    Returns the settings for the automatic error stack traversal function and its data.
    +
    hid_t H5Fopen(const char *filename, unsigned flags, hid_t fapl_id)
    Opens an existing HDF5 file.

    Or automatic printing can be disabled altogether and error messages can be explicitly printed.

    -

    Example: Disable automatic printing and explicitly print error messages

    *** Turn off error handling permanently ***
    +

    Example: Disable automatic printing and explicitly print error messages

    // Turn off error handling permanently
    H5Eset_auto2(error_stack, NULL, NULL);
    -
    *** If failure, print error message ***
    +
    // If failure, print error message
    if (H5Fopen (....)<0) {
    exit (1);
    }
    #define H5E_DEFAULT
    Definition H5Epublic.h:25
    -
    hid_t H5Fopen(const char *filename, unsigned flags, hid_t fapl_id)
    Opens an existing HDF5 file.

    Customized Printing of an Error Stack

    Applications are allowed to define an automatic error traversal function other than the default H5Eprint(). For instance, one can define a function that prints a simple, one‐line error message to the standard error stream and then exits. The first example below defines a such a function. The second example below installs the function as the error handler.

    @@ -233,7 +226,7 @@ Traverse an Error Stack with a Callback Function

    The maj_num and min_num are major and minor error IDs, func_name is the name of the function where the error was detected, file_name and line locate the error within the HDF5 Library source code, and desc points to a description of the error.

    The following example shows a user‐defined callback function.

    -

    Example: A user‐defined callback function

    \#define MSG_SIZE 64
    +

    A user‐defined callback function Example

    #define MSG_SIZE 64
    custom_print_cb(unsigned n, const H5E_error2_t *err_desc, void *client_data)
    {
    @@ -243,7 +236,7 @@ Traverse an Error Stack with a Callback Function
    char cls[MSG_SIZE];
    const int indent = 4;
    -
    *** Get descriptions for the major and minor error numbers ***
    +
    // Get descriptions for the major and minor error numbers
    if(H5Eget_class_name(err_desc->cls_id, cls, MSG_SIZE) < 0)
    TEST_ERROR;
    if(H5Eget_msg(err_desc->maj_num, NULL, maj, MSG_SIZE) < 0)
    @@ -273,32 +266,26 @@ Traverse an Error Stack with a Callback Function

    Advanced Error Handling Operations

    The section above, see Basic Error Handling Operations, discusses the basic error handling operations of the library. In that section, all the error records on the error stack are from the library itself. In this section, we are going to introduce the operations that allow an application program to push its own error records onto the error stack once it declares an error class of its own through the HDF5 Error API.

    - - - - -
    Example: An Error Report

    -

    An error report shows both the library's error record and the application's error records. See the example below.

    -

    -Error Test-DIAG: Error detected in Error Program (1.0)
    -        thread 8192:
    -    #000: ../../hdf5/test/error_test.c line ### in main():
    -        Error test failed
    -      major: Error in test
    -      minor: Error in subroutine
    -    #001: ../../hdf5/test/error_test.c line ### in
    -        test_error(): H5Dwrite failed as supposed to
    -      major: Error in IO
    -      minor: Error in H5Dwrite
    -  HDF5-DIAG: Error detected in HDF5 (1.10.9) thread #####:
    -    #002: ../../hdf5/src/H5Dio.c line ### in H5Dwrite():
    -        not a dataset
    -      major: Invalid arguments to routine
    -      minor: Inappropriate type
    -      

    -
    -

    In the line above error record #002 in the example above, the starting phrase is HDF5. This is the error class name of the HDF5 Library. All of the library's error messages (major and minor) are in this default error class. The Error Test in the beginning of the line above error record #000 is the name of the application's error class. The first two error records, #000 and #001, are from application's error class. By definition, an error class is a group of major and minor error messages for a library (the HDF5 Library or an application library built on top of the HDF5 Library) or an application program. The error class can be registered for a library or program through the HDF5 Error API. Major and minor messages can be defined in an error class. An application will have object handles for the error class and for major and minor messages for further operation. See the example below.

    -

    Example: The user‐defined error handler

    \#define MSG_SIZE 64
    +

    An error report shows both the library's error record and the application's error records. See the example below.

    +

    An Error Report Example

    Error Test-DIAG: Error detected in Error Program (1.0)
    +
    thread 8192:
    +
    #000: ../../hdf5/test/error_test.c line ### in main():
    +
    Error test failed
    +
    major: Error in test
    +
    minor: Error in subroutine
    +
    #001: ../../hdf5/test/error_test.c line ### in
    +
    test_error(): H5Dwrite failed as supposed to
    +
    major: Error in IO
    +
    minor: Error in H5Dwrite
    +
    HDF5-DIAG: Error detected in HDF5 (1.10.9) thread #####:
    +
    #002: ../../hdf5/src/H5Dio.c line ### in H5Dwrite():
    +
    not a dataset
    +
    major: Invalid arguments to routine
    +
    minor: Inappropriate type
    +
    herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf)
    Writes raw data from a buffer to a dataset.
    +
    Definition HDF5.F90:26
    +

    In the line above error record #002 in the example above, the starting phrase is HDF5. This is the error class name of the HDF5 Library. All of the library's error messages (major and minor) are in this default error class. The Error Test in the beginning of the line above error record #000 is the name of the application's error class. The first two error records, #000 and #001, are from application's error class. By definition, an error class is a group of major and minor error messages for a library (the HDF5 Library or an application library built on top of the HDF5 Library) or an application program. The error class can be registered for a library or program through the HDF5 Error API. Major and minor messages can be defined in an error class. An application will have object handles for the error class and for major and minor messages for further operation. See the example below.

    +

    Example: The user‐defined error handler

    #define MSG_SIZE 64
    custom_print_cb(unsigned n, const H5E_error2_t *err_desc,
    void* client_data)
    @@ -309,7 +296,7 @@ Error Test-DIAG: Error detected in Error Program (1.0)
    char cls[MSG_SIZE];
    const int indent = 4;
    -
    *** Get descriptions for the major and minor error numbers ***
    +
    // Get descriptions for the major and minor error numbers
    if(H5Eget_class_name(err_desc->cls_id, cls, MSG_SIZE) < 0)
    TEST_ERROR;
    if(H5Eget_msg(err_desc->maj_num, NULL, maj, MSG_SIZE) < 0)
    @@ -349,13 +336,13 @@ More Error API Functions
    herr_t H5Eunregister_class(hid_t class_id)
    Removes an error class.

    This function removes an error class from the Error API.

    The example below shows how an application creates an error class and error messages.

    -

    Example: Create an error class and error messages

    *** Create an error class ***
    +

    Example: Create an error class and error messages

    // Create an error class
    class_id = H5Eregister_class(ERR_CLS_NAME, PROG_NAME, PROG_VERS);
    -
    *** Retrieve class name ***
    +
    // Retrieve class name
    H5Eget_class_name(class_id, cls_name, cls_size);
    -
    *** Create a major error message in the class ***
    +
    // Create a major error message in the class
    maj_id = H5Ecreate_msg(class_id, H5E_MAJOR, “... ...”);
    -
    *** Create a minor error message in the class ***
    +
    // Create a minor error message in the class
    min_id = H5Ecreate_msg(class_id, H5E_MINOR, “... ...”);
    @ H5E_MINOR
    Definition H5Epublic.h:30
    @ H5E_MAJOR
    Definition H5Epublic.h:30
    @@ -389,32 +376,31 @@ Pushing an Application Error Message onto Error Stack
    herr_t H5Eclose_stack(hid_t stack_id)
    Closes an error stack handle.

    This function closes the object handle for an error stack and releases its resources.

    The example below shows how an application pushes an error record onto the default error stack.

    -

    Example: Pushing an error message to an error stack

    *** Make call to HDF5 I/O routine ***
    +

    Example: Pushing an error message to an error stack

    // Make call to HDF5 I/O routine
    if((dset_id=H5Dopen(file_id, dset_name, access_plist)) < 0)
    {
    -
    *** Push client error onto error stack ***
    +
    // Push client error onto error stack
    H5Epush(H5E_DEFAULT,__FILE__,FUNC,__LINE__,cls_id,
    CLIENT_ERR_MAJ_IO,CLIENT_ERR_MINOR_OPEN, “H5Dopen failed”);
    }
    -
    *** Indicate error occurred in function ***
    +
    // Indicate error occurred in function
    return 0;
    #define H5Dopen
    Definition H5version.h:903

    The example below shows how an application registers the current error stack and creates an object handle to avoid another HDF5 function from clearing the error stack.

    Example: Registering the error stack

    if (H5Dwrite(dset_id, mem_type_id, mem_space_id, file_space_id, dset_xfer_plist_id, buf) < 0)
    {
    -
    *** Push client error onto error stack ***
    +
    // Push client error onto error stack
    H5Epush2(H5E_DEFAULT,__FILE__,FUNC,__LINE__,cls_id,
    CLIENT_ERR_MAJ_IO,CLIENT_ERR_MINOR_HDF5,
    “H5Dwrite failed”);
    -
    *** Preserve the error stack by assigning an object handle to it ***
    +
    // Preserve the error stack by assigning an object handle to it
    error_stack = H5Eget_current_stack();
    -
    *** Close dataset ***
    +
    // Close dataset
    H5Dclose(dset_id);
    -
    *** Replace the current error stack with the preserved one ***
    +
    // Replace the current error stack with the preserved one
    H5Eset_current_stack(error_stack);
    }
    return 0;
    -
    herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf)
    Writes raw data from a buffer to a dataset.
    herr_t H5Dclose(hid_t dset_id)
    Closes the specified dataset.
    herr_t H5Epush2(hid_t err_stack, const char *file, const char *func, unsigned line, hid_t cls_id, hid_t maj_id, hid_t min_id, const char *msg,...)
    Pushes a new error record onto an error stack.

    Previous Chapter HDF5 Attributes - Next Chapter Properties and Property Lists in HDF5

    diff --git a/develop/_h5_e__walk__cb_8java.html b/develop/_h5_e__walk__cb_8java.html index 140fd8ceec0..e50f003d603 100644 --- a/develop/_h5_e__walk__cb_8java.html +++ b/develop/_h5_e__walk__cb_8java.html @@ -37,7 +37,7 @@ Logo -
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    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_e_s__u_g.html',''); initResizable(
    HDF5 Event Set
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction

    The HDF5 Event Set Interface

    diff --git a/develop/_h5_e_sdevelop_8h.html b/develop/_h5_e_sdevelop_8h.html index 9551a9044a7..109a22af142 100644 --- a/develop/_h5_e_sdevelop_8h.html +++ b/develop/_h5_e_sdevelop_8h.html @@ -37,7 +37,7 @@ Logo -
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    @@ -134,7 +134,7 @@ Introduction

  • The use of file access property lists
  • The use of low-level file drivers
  • -

    This chapter assumes an understanding of the material presented in the data model chapter. For more information,

    See also
    The HDF5 Data Model and File Structure.
    +

    This chapter assumes an understanding of the material presented in the data model chapter. For more information, see The HDF5 Data Model and File Structure.

    File Access Modes

    There are two issues regarding file access:

      @@ -167,10 +167,10 @@ Is a file to be opened with read-only or read-write access? File Creation and File Access Properties

      File creation and file access property lists control the more complex aspects of creating and accessing files.

      File creation property lists control the characteristics of a file such as the size of the userblock, a user-definable data block; the size of data address parameters; properties of the B-trees that are used to manage the data in the file; and certain HDF5 Library versioning information.

      -

      For more information,

      See also
      File Creation Properties.
      +

      For more information, see File Creation Properties.

      This section has a more detailed discussion of file creation properties. If you have no special requirements for these file characteristics, you can simply specify H5P_DEFAULT for the default file creation property list when a file creation property list is called for.

      File access property lists control properties and means of accessing a file such as data alignment characteristics, metadata block and cache sizes, data sieve buffer size, garbage collection settings, and parallel I/O. Data alignment, metadata block and cache sizes, and data sieve buffer size are factors in improving I/O performance.

      -

      For more information,

      See also
      File Access Properties.
      +

      For more information, see File Access Properties.

      This section has a more detailed discussion of file access properties. If you have no special requirements for these file access characteristics, you can simply specify H5P_DEFAULT for the default file access property list when a file access property list is called for.

      @@ -510,9 +510,8 @@ Creating or Opening an HDF5 File

      H5Fopen opens an existing file with read-write access if H5F_ACC_RDWR is set and read-only access if H5F_ACC_RDONLY is set.

      fapl_id is the file access property list identifier. Alternatively, H5P_DEFAULT indicates that the application relies on the default I/O access parameters. Creating and changing access property lists is documented further below.

      A file can be opened more than once via multiple H5Fopen calls. Each such call returns a unique file identifier and the file can be accessed through any of these file identifiers as long as they remain valid. Each of these file identifiers must be released by calling H5Fclose when it is no longer needed.

      -

      For more information,

      See also
      File Access Properties. For more information,
      -
      -File Property Lists.
      +

      For more information, see File Access Properties.

      +

      For more information, see File Property Lists.

      Closing an HDF5 File

      H5Fclose both closes a file and releases the file identifier returned by H5Fopen or H5Fcreate. H5Fclose must be called when an application is done working with a file; while the HDF5 Library makes every effort to maintain file integrity, failure to call H5Fclose may result in the file being abandoned in an incomplete or corrupted state.

      @@ -595,7 +594,7 @@ Alternate File Storage Layouts and Low-level File Drivers
    • More abstract situations such as virtual files
    • This HDF5 address space is generally referred to as an HDF5 file regardless of its organization at the storage level.

      -

      HDF5 employs an extremely flexible mechanism called the virtual file layer, or VFL, for file I/O. A full understanding of the VFL is only necessary if you plan to write your own drivers

      See also
      HDF5 Virtual File Layer in the HDF5 Technical Notes.
      +

      HDF5 employs an extremely flexible mechanism called the virtual file layer, or VFL, for file I/O. A full understanding of the VFL is only necessary if you plan to write your own drivers see HDF5 Virtual File Layer in the HDF5 Technical Notes.

      For our purposes here, it is sufficient to know that the low-level drivers used for file I/O reside in the VFL, as illustrated in the following figure. Note that H5FD_STREAM is not available with 1.8.x and later versions of the library.

      Figure 10 - More sample file structures
      @@ -650,7 +649,7 @@ I/O path from application to VFL and low-level drivers to storage

    For more information, see the HDF5 Reference Manual entries for the function calls shown in the column on the right in the table above.

    Note that the low-level file drivers manage alternative file storage layouts. Dataset storage layouts (chunking, compression, and external dataset storage) are managed independently of file storage layouts.

    -

    If an application requires a special-purpose low-level driver, the VFL provides a public API for creating one. For more information on how to create a driver,

    See also
    HDF5 Virtual File Layer in the HDF5 Technical Notes.
    +

    If an application requires a special-purpose low-level driver, the VFL provides a public API for creating one. For more information on how to create a driver, see HDF5 Virtual File Layer in the HDF5 Technical Notes.

    Identifying the Previously‐used File Driver

    When creating a new HDF5 file, no history exists, so the file driver must be specified if it is to be other than the default.

    @@ -743,9 +742,7 @@ Only one HDF5 file identifier can be opened for the file, the identifier returne The changes to the file will be discarded when access is terminated unless backing_store is set to 1

    Additional parameters may be added to these functions in the future.

    -
    See also
    HDF5 File Image Operations section for information on more advanced usage of the Memory file driver, and
    -
    -Modified Region Writes section for information on how to set write operations so that only modified regions are written to storage.
    +

    see HDF5 File Image Operations section for information on more advanced usage of the Memory file driver, and see Modified Region Writes section for information on how to set write operations so that only modified regions are written to storage.

    The Family Driver

    HDF5 files can become quite large, and this can create problems on systems that do not support files larger than 2 gigabytes. The HDF5 file family mechanism is designed to solve the problems this creates by splitting the HDF5 file address space across several smaller files. This structure does not affect how metadata and raw data are stored: they are mixed in the address space just as they would be in a single, contiguous file.

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    diff --git a/develop/_h5_f_donion__priv_8h.html b/develop/_h5_f_donion__priv_8h.html index 1f84fa34979..694ccfdf4b5 100644 --- a/develop/_h5_f_donion__priv_8h.html +++ b/develop/_h5_f_donion__priv_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dpkg_8h.html b/develop/_h5_f_dpkg_8h.html index 0435bcb78fa..0175c98e679 100644 --- a/develop/_h5_f_dpkg_8h.html +++ b/develop/_h5_f_dpkg_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dprivate_8h.html b/develop/_h5_f_dprivate_8h.html index 23c282cd72f..dc455622f9a 100644 --- a/develop/_h5_f_dprivate_8h.html +++ b/develop/_h5_f_dprivate_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dpublic_8h.html b/develop/_h5_f_dpublic_8h.html index ef905e3be19..18ca743e05d 100644 --- a/develop/_h5_f_dpublic_8h.html +++ b/develop/_h5_f_dpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dros3_8h.html b/develop/_h5_f_dros3_8h.html index f6f416c8d40..279b74193d8 100644 --- a/develop/_h5_f_dros3_8h.html +++ b/develop/_h5_f_dros3_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_ds3comms_8h.html b/develop/_h5_f_ds3comms_8h.html index fcaa49ee9a5..5707d1f3e7e 100644 --- a/develop/_h5_f_ds3comms_8h.html +++ b/develop/_h5_f_ds3comms_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dsec2_8h.html b/develop/_h5_f_dsec2_8h.html index f34c042d049..6e2c4d767aa 100644 --- a/develop/_h5_f_dsec2_8h.html +++ b/develop/_h5_f_dsec2_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dsplitter_8h.html b/develop/_h5_f_dsplitter_8h.html index baf22428e97..5c6b49dfe06 100644 --- a/develop/_h5_f_dsplitter_8h.html +++ b/develop/_h5_f_dsplitter_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dstdio_8h.html b/develop/_h5_f_dstdio_8h.html index 5c7191855e6..805eac8c4fd 100644 --- a/develop/_h5_f_dstdio_8h.html +++ b/develop/_h5_f_dstdio_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dsubfiling_8h.html b/develop/_h5_f_dsubfiling_8h.html index 8c25be11171..60e93328e66 100644 --- a/develop/_h5_f_dsubfiling_8h.html +++ b/develop/_h5_f_dsubfiling_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dsubfiling__priv_8h.html b/develop/_h5_f_dsubfiling__priv_8h.html index 45f79b86ea1..73fd9e76c16 100644 --- a/develop/_h5_f_dsubfiling__priv_8h.html +++ b/develop/_h5_f_dsubfiling__priv_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_dwindows_8h.html b/develop/_h5_f_dwindows_8h.html index 0c661d1d587..29ef01118f6 100644 --- a/develop/_h5_f_dwindows_8h.html +++ b/develop/_h5_f_dwindows_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_lmodule_8h.html b/develop/_h5_f_lmodule_8h.html index c493af7e25f..932e4b360d8 100644 --- a/develop/_h5_f_lmodule_8h.html +++ b/develop/_h5_f_lmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_f_smodule_8h.html b/develop/_h5_f_smodule_8h.html index add9be2cdf6..59babe9c2b9 100644 --- a/develop/_h5_f_smodule_8h.html +++ b/develop/_h5_f_smodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_facc_prop_8h.html b/develop/_h5_facc_prop_8h.html index c530049a137..416aea22281 100644 --- a/develop/_h5_facc_prop_8h.html +++ b/develop/_h5_facc_prop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_fcreat_prop_8h.html b/develop/_h5_fcreat_prop_8h.html index 4809dd3cf2f..c743e6bc52f 100644 --- a/develop/_h5_fcreat_prop_8h.html +++ b/develop/_h5_fcreat_prop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_fff_8_f90.html b/develop/_h5_fff_8_f90.html index fcd56bdc034..c14d9f27da9 100644 --- a/develop/_h5_fff_8_f90.html +++ b/develop/_h5_fff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_file_8h.html b/develop/_h5_file_8h.html index 5f2484ca342..e54fb44b5a6 100644 --- a/develop/_h5_file_8h.html +++ b/develop/_h5_file_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_float_type_8h.html b/develop/_h5_float_type_8h.html index d87ad2596e2..ba159134c24 100644 --- a/develop/_h5_float_type_8h.html +++ b/develop/_h5_float_type_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_fmodule_8h.html b/develop/_h5_fmodule_8h.html index 202bc5d8099..3c999e56017 100644 --- a/develop/_h5_fmodule_8h.html +++ b/develop/_h5_fmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_fpublic_8h.html b/develop/_h5_fpublic_8h.html index 97e94eb6c0f..d0e575d00c3 100644 --- a/develop/_h5_fpublic_8h.html +++ b/develop/_h5_fpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_g__info__t_8java.html b/develop/_h5_g__info__t_8java.html index ed97cc80d88..5454d339cf1 100644 --- a/develop/_h5_g__info__t_8java.html +++ b/develop/_h5_g__info__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_g__u_g.html b/develop/_h5_g__u_g.html index 5dca0642f36..cd62aea7a04 100644 --- a/develop/_h5_g__u_g.html +++ b/develop/_h5_g__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -541,7 +541,7 @@ Creating Links

    Consider the following example: assume that the group group2 can only be accessed via the following path, where top_group is a member of the file's root group: /top_group/group1/group2/

    Using H5Lmove, top_group is renamed to be a member ofgroup2. At this point, since top_group was the only route from the root group to group1, there is no longer a path by which one can access group1, group2, or any member datasets. And since top_group is now a member of group2, top_group itself and any member datasets have thereby also become inaccessible.

    Mounting a File

    -

    An external link is a permanent connection between two files. A temporary connection can be set up with the H5Fmount function. For more information,

    See also
    sec_file. For more information, see the H5Fmount function in the HDF5 Reference Manual.
    +

    An external link is a permanent connection between two files. A temporary connection can be set up with the H5Fmount function. For more information,

    See also
    The HDF5 File. For more information, see the H5Fmount function in the HDF5 Reference Manual.

    Discovering Information about Objects

    There is often a need to retrieve information about a particular object. The H5Lget_info and H5Oget_info functions fill this niche by returning a description of the object or link in an H5L_info_t or H5O_info_t structure.

    diff --git a/develop/_h5_gff_8_f90.html b/develop/_h5_gff_8_f90.html index 82c592322ec..fd8aad21124 100644 --- a/develop/_h5_gff_8_f90.html +++ b/develop/_h5_gff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_gmodule_8h.html b/develop/_h5_gmodule_8h.html index d49523035db..2097606834d 100644 --- a/develop/_h5_gmodule_8h.html +++ b/develop/_h5_gmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_gpublic_8h.html b/develop/_h5_gpublic_8h.html index 8425e394412..d00aa4cb01f 100644 --- a/develop/_h5_gpublic_8h.html +++ b/develop/_h5_gpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_group_8h.html b/develop/_h5_group_8h.html index b6a0431e289..9ac938585cd 100644 --- a/develop/_h5_group_8h.html +++ b/develop/_h5_group_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_h_fmodule_8h.html b/develop/_h5_h_fmodule_8h.html index f7ce3971bd5..29214bfd830 100644 --- a/develop/_h5_h_fmodule_8h.html +++ b/develop/_h5_h_fmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_h_gmodule_8h.html b/develop/_h5_h_gmodule_8h.html index 89a2061c20e..73d40ce7203 100644 --- a/develop/_h5_h_gmodule_8h.html +++ b/develop/_h5_h_gmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_h_l__buildiface_8_f90.html b/develop/_h5_h_l__buildiface_8_f90.html index 08a6bf59a6d..5b0fb06af0e 100644 --- a/develop/_h5_h_l__buildiface_8_f90.html +++ b/develop/_h5_h_l__buildiface_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_h_lmodule_8h.html b/develop/_h5_h_lmodule_8h.html index 0b0699a462f..f7d22045849 100644 --- a/develop/_h5_h_lmodule_8h.html +++ b/develop/_h5_h_lmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_i__u_g.html b/develop/_h5_i__u_g.html index a0f460561b2..ce874093e62 100644 --- a/develop/_h5_i__u_g.html +++ b/develop/_h5_i__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_i__u_g.html',''); initResizable();
    HDF5 Identifiers
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction
    diff --git a/develop/_h5_i_m__u_g.html b/develop/_h5_i_m__u_g.html index 3fb5d267c43..7158c00d83b 100644 --- a/develop/_h5_i_m__u_g.html +++ b/develop/_h5_i_m__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_i_m__u_g.html',''); initResizable(
    HDF5 High Level Images
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction
    diff --git a/develop/_h5_i_mff_8_f90.html b/develop/_h5_i_mff_8_f90.html index 34e5de63922..a33bef97367 100644 --- a/develop/_h5_i_mff_8_f90.html +++ b/develop/_h5_i_mff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_i_mpublic_8h.html b/develop/_h5_i_mpublic_8h.html index f4278652731..676dd25e099 100644 --- a/develop/_h5_i_mpublic_8h.html +++ b/develop/_h5_i_mpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_id_component_8h.html b/develop/_h5_id_component_8h.html index 3da87a38de4..06fd0ab02db 100644 --- a/develop/_h5_id_component_8h.html +++ b/develop/_h5_id_component_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_idevelop_8h.html b/develop/_h5_idevelop_8h.html index 5ad83fe96fb..e4e525f0dc3 100644 --- a/develop/_h5_idevelop_8h.html +++ b/develop/_h5_idevelop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_iff_8_f90.html b/develop/_h5_iff_8_f90.html index 548cf61d0c1..ffa33c5e828 100644 --- a/develop/_h5_iff_8_f90.html +++ b/develop/_h5_iff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_imodule_8h.html b/develop/_h5_imodule_8h.html index 8073df28776..b36997f6e07 100644 --- a/develop/_h5_imodule_8h.html +++ b/develop/_h5_imodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_include_8h.html b/develop/_h5_include_8h.html index 5630623e2a4..7647835a84f 100644 --- a/develop/_h5_include_8h.html +++ b/develop/_h5_include_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_int_type_8h.html b/develop/_h5_int_type_8h.html index eb93a3df2db..75bd7830314 100644 --- a/develop/_h5_int_type_8h.html +++ b/develop/_h5_int_type_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_ipublic_8h.html b/develop/_h5_ipublic_8h.html index 8901e056879..b1901bd4fdd 100644 --- a/develop/_h5_ipublic_8h.html +++ b/develop/_h5_ipublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_l__info__t_8java.html b/develop/_h5_l__info__t_8java.html index 23c167d756b..917d149e5e2 100644 --- a/develop/_h5_l__info__t_8java.html +++ b/develop/_h5_l__info__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_l__iterate__opdata__t_8java.html b/develop/_h5_l__iterate__opdata__t_8java.html index 082c98870ba..377c1178b16 100644 --- a/develop/_h5_l__iterate__opdata__t_8java.html +++ b/develop/_h5_l__iterate__opdata__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_l__iterate__t_8java.html b/develop/_h5_l__iterate__t_8java.html index 0f7d056ba56..8ca4d543535 100644 --- a/develop/_h5_l__iterate__t_8java.html +++ b/develop/_h5_l__iterate__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_l__u_g.html b/develop/_h5_l__u_g.html index 53bfbfdb9ec..7440c41b50e 100644 --- a/develop/_h5_l__u_g.html +++ b/develop/_h5_l__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_l__u_g.html',''); initResizable();
    HDF5 Links
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction
    diff --git a/develop/_h5_l_dpublic_8h.html b/develop/_h5_l_dpublic_8h.html index 6f06bddc27c..5e168755d32 100644 --- a/develop/_h5_l_dpublic_8h.html +++ b/develop/_h5_l_dpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_l_t__u_g.html b/develop/_h5_l_t__u_g.html index 08bf3a99535..b6079c3e10f 100644 --- a/develop/_h5_l_t__u_g.html +++ b/develop/_h5_l_t__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_l_t__u_g.html',''); initResizable(
    HDF5 High Level Lite
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction
    diff --git a/develop/_h5_l_tff_8_f90.html b/develop/_h5_l_tff_8_f90.html index 868d905e2f4..27f16a538b1 100644 --- a/develop/_h5_l_tff_8_f90.html +++ b/develop/_h5_l_tff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_l_tpublic_8h.html b/develop/_h5_l_tpublic_8h.html index 1afd174f219..a781dd8e438 100644 --- a/develop/_h5_l_tpublic_8h.html +++ b/develop/_h5_l_tpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_lacc_prop_8h.html b/develop/_h5_lacc_prop_8h.html index 1c0c9fcd92b..d9620c855f3 100644 --- a/develop/_h5_lacc_prop_8h.html +++ b/develop/_h5_lacc_prop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_lcreat_prop_8h.html b/develop/_h5_lcreat_prop_8h.html index d55a7786661..06976b53af9 100644 --- a/develop/_h5_lcreat_prop_8h.html +++ b/develop/_h5_lcreat_prop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_ldevelop_8h.html b/develop/_h5_ldevelop_8h.html index fb08463a701..05a850e2b67 100644 --- a/develop/_h5_ldevelop_8h.html +++ b/develop/_h5_ldevelop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_lff_8_f90.html b/develop/_h5_lff_8_f90.html index 6b2247157aa..6149f58520f 100644 --- a/develop/_h5_lff_8_f90.html +++ b/develop/_h5_lff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_library_8h.html b/develop/_h5_library_8h.html index 4496a698dd5..387ce35ba46 100644 --- a/develop/_h5_library_8h.html +++ b/develop/_h5_library_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h5_lmodule_8h.html b/develop/_h5_lmodule_8h.html index 0eccbd20fc3..bce7a870807 100644 --- a/develop/_h5_lmodule_8h.html +++ b/develop/_h5_lmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_location_8h.html b/develop/_h5_location_8h.html index 0c9f8dbeeeb..29d8502b8ff 100644 --- a/develop/_h5_location_8h.html +++ b/develop/_h5_location_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h5_lpublic_8h.html b/develop/_h5_lpublic_8h.html index 07693447cfb..5142d883a8a 100644 --- a/develop/_h5_lpublic_8h.html +++ b/develop/_h5_lpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_m__u_g.html b/develop/_h5_m__u_g.html index f459da8aa76..ed29e61618b 100644 --- a/develop/_h5_m__u_g.html +++ b/develop/_h5_m__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -124,8 +124,8 @@ $(document).ready(function(){initNavTree('_h5_m__u_g.html',''); initResizable();

    The HDF5 Data Mapping can only be used with the HDF5 VOL connectors that implement map objects. The native HDF5 library does not support this feature.

    HDF5 Map Object

    -
    Todo:
    Describe the map life cycle.
    -
    Todo:
    How does MAPL fit into Property List Classes.
    +
    Todo:
    Describe the map life cycle.
    +
    Todo:
    How does MAPL fit into Property List Classes.

    Previous Chapter The HDF5 Event Set Interface - Next Chapter Additional Resources

    diff --git a/develop/_h5_m_fmodule_8h.html b/develop/_h5_m_fmodule_8h.html index 197876e4da1..f07fef1b68c 100644 --- a/develop/_h5_m_fmodule_8h.html +++ b/develop/_h5_m_fmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_m_mpublic_8h.html b/develop/_h5_m_mpublic_8h.html index 40177b03b2e..65fc9ff795d 100644 --- a/develop/_h5_m_mpublic_8h.html +++ b/develop/_h5_m_mpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h5_mmodule_8h.html b/develop/_h5_mmodule_8h.html index 574862f0f12..24e4cf4867b 100644 --- a/develop/_h5_mmodule_8h.html +++ b/develop/_h5_mmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h5_mpublic_8h.html b/develop/_h5_mpublic_8h.html index 375b73c94dc..d3359945807 100644 --- a/develop/_h5_mpublic_8h.html +++ b/develop/_h5_mpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h5_o__hdr__info__t_8java.html b/develop/_h5_o__hdr__info__t_8java.html index 893fba96867..0aee2d05d2f 100644 --- a/develop/_h5_o__hdr__info__t_8java.html +++ b/develop/_h5_o__hdr__info__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_o__info__t_8java.html b/develop/_h5_o__info__t_8java.html index 3a48ee8057a..35dcaa80d57 100644 --- a/develop/_h5_o__info__t_8java.html +++ b/develop/_h5_o__info__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_o__iterate__opdata__t_8java.html b/develop/_h5_o__iterate__opdata__t_8java.html index 9b762177c13..756a9b087b0 100644 --- a/develop/_h5_o__iterate__opdata__t_8java.html +++ b/develop/_h5_o__iterate__opdata__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_o__iterate__t_8java.html b/develop/_h5_o__iterate__t_8java.html index c8cdff141b5..c307fabce8b 100644 --- a/develop/_h5_o__iterate__t_8java.html +++ b/develop/_h5_o__iterate__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_o__native__info__t_8java.html b/develop/_h5_o__native__info__t_8java.html index 70b21c2300d..0aeb31821f1 100644 --- a/develop/_h5_o__native__info__t_8java.html +++ b/develop/_h5_o__native__info__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_o__token__t_8java.html b/develop/_h5_o__token__t_8java.html index 5f1020eca57..141a14a9659 100644 --- a/develop/_h5_o__token__t_8java.html +++ b/develop/_h5_o__token__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_o__u_g.html b/develop/_h5_o__u_g.html index 70fc439e61e..de551f20875 100644 --- a/develop/_h5_o__u_g.html +++ b/develop/_h5_o__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_o__u_g.html',''); initResizable();
    HDF5 Objects
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction
    diff --git a/develop/_h5_object_8h.html b/develop/_h5_object_8h.html index f9c7228676c..ca81946c4a5 100644 --- a/develop/_h5_object_8h.html +++ b/develop/_h5_object_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_ocreat_prop_8h.html b/develop/_h5_ocreat_prop_8h.html index 620c99cc2ee..983cc539712 100644 --- a/develop/_h5_ocreat_prop_8h.html +++ b/develop/_h5_ocreat_prop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_off_8_f90.html b/develop/_h5_off_8_f90.html index dcafdd1fcc2..3f66ed1589b 100644 --- a/develop/_h5_off_8_f90.html +++ b/develop/_h5_off_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_omodule_8h.html b/develop/_h5_omodule_8h.html index 51a1422a09b..d79b2064b96 100644 --- a/develop/_h5_omodule_8h.html +++ b/develop/_h5_omodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_opublic_8h.html b/develop/_h5_opublic_8h.html index ed2d3767871..e03f7a166e6 100644 --- a/develop/_h5_opublic_8h.html +++ b/develop/_h5_opublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__cls__close__func__cb_8java.html b/develop/_h5_p__cls__close__func__cb_8java.html index 2ef97b0d503..ce4f777c99f 100644 --- a/develop/_h5_p__cls__close__func__cb_8java.html +++ b/develop/_h5_p__cls__close__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__cls__close__func__t_8java.html b/develop/_h5_p__cls__close__func__t_8java.html index f44798b889d..2583f2e1e90 100644 --- a/develop/_h5_p__cls__close__func__t_8java.html +++ b/develop/_h5_p__cls__close__func__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__cls__copy__func__cb_8java.html b/develop/_h5_p__cls__copy__func__cb_8java.html index 84dbfcefd91..ce4f9ba9be1 100644 --- a/develop/_h5_p__cls__copy__func__cb_8java.html +++ b/develop/_h5_p__cls__copy__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__cls__copy__func__t_8java.html b/develop/_h5_p__cls__copy__func__t_8java.html index 0590f0e3cdc..6f51fa3f401 100644 --- a/develop/_h5_p__cls__copy__func__t_8java.html +++ b/develop/_h5_p__cls__copy__func__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__cls__create__func__cb_8java.html b/develop/_h5_p__cls__create__func__cb_8java.html index 7e8f25a426d..984832a19d6 100644 --- a/develop/_h5_p__cls__create__func__cb_8java.html +++ b/develop/_h5_p__cls__create__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__cls__create__func__t_8java.html b/develop/_h5_p__cls__create__func__t_8java.html index 416bd342765..bba81d88c2d 100644 --- a/develop/_h5_p__cls__create__func__t_8java.html +++ b/develop/_h5_p__cls__create__func__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__iterate__cb_8java.html b/develop/_h5_p__iterate__cb_8java.html index 7da06a42b41..d288c1ec30e 100644 --- a/develop/_h5_p__iterate__cb_8java.html +++ b/develop/_h5_p__iterate__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__iterate__t_8java.html b/develop/_h5_p__iterate__t_8java.html index c078d8cf3fe..15a46b237cb 100644 --- a/develop/_h5_p__iterate__t_8java.html +++ b/develop/_h5_p__iterate__t_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__prp__close__func__cb_8java.html b/develop/_h5_p__prp__close__func__cb_8java.html index 435e6e85411..ad27bf2d649 100644 --- a/develop/_h5_p__prp__close__func__cb_8java.html +++ b/develop/_h5_p__prp__close__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__prp__compare__func__cb_8java.html b/develop/_h5_p__prp__compare__func__cb_8java.html index dfc15563cb2..310b7844556 100644 --- a/develop/_h5_p__prp__compare__func__cb_8java.html +++ b/develop/_h5_p__prp__compare__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__prp__copy__func__cb_8java.html b/develop/_h5_p__prp__copy__func__cb_8java.html index 71741fb155c..1ba07b84009 100644 --- a/develop/_h5_p__prp__copy__func__cb_8java.html +++ b/develop/_h5_p__prp__copy__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__prp__create__func__cb_8java.html b/develop/_h5_p__prp__create__func__cb_8java.html index 65311f3412c..d27a015e2fe 100644 --- a/develop/_h5_p__prp__create__func__cb_8java.html +++ b/develop/_h5_p__prp__create__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__prp__delete__func__cb_8java.html b/develop/_h5_p__prp__delete__func__cb_8java.html index 0dee4614e23..c967f567dea 100644 --- a/develop/_h5_p__prp__delete__func__cb_8java.html +++ b/develop/_h5_p__prp__delete__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__prp__get__func__cb_8java.html b/develop/_h5_p__prp__get__func__cb_8java.html index 7b5b5e6bf1f..f528677f8e1 100644 --- a/develop/_h5_p__prp__get__func__cb_8java.html +++ b/develop/_h5_p__prp__get__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__prp__set__func__cb_8java.html b/develop/_h5_p__prp__set__func__cb_8java.html index 9267a2821d7..2d1e001a332 100644 --- a/develop/_h5_p__prp__set__func__cb_8java.html +++ b/develop/_h5_p__prp__set__func__cb_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p__u_g.html b/develop/_h5_p__u_g.html index a03248c5292..fec0d4fb9b3 100644 --- a/develop/_h5_p__u_g.html +++ b/develop/_h5_p__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_p_bmodule_8h.html b/develop/_h5_p_bmodule_8h.html index c3f085a5a68..2ee840a11c4 100644 --- a/develop/_h5_p_bmodule_8h.html +++ b/develop/_h5_p_bmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h5_p_l__u_g.html b/develop/_h5_p_l__u_g.html index 7ace3d4763e..eab58f25646 100644 --- a/develop/_h5_p_l__u_g.html +++ b/develop/_h5_p_l__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -322,7 +322,7 @@ Building an HDF5 bzip2 Plugin Example

    The HDF Group provides an repository of the HDF5 filter plugin that can be checked out from BZIP2 Filter Plugin.

    It contains the source code for the bzip2 plugin library and an example that uses the plugin. It requires the HDF5 Library with the dynamically loaded feature and the bzip2 library being available on the system. The plugin and the example can be built using configure or CMake commands. For instructions on how to build with CMake, see the README.txt file in the source code distribution. The bzip2 library that can be built with CMake is available from:

    GIT_URL: "https://github.com/libarchive/bzip2.git"
    GIT_BRANCH: "master"
    -

    See the documentation at <aref="https://github.com/HDFGroup/hdf5_plugins/tree/master/docs">hdf5_plugins/docs folder. In particular: <aref="https://github.com/HDFGroup/hdf5_plugins/blob/master/docs/INSTALL_With_CMake.txt">INSTALL_With_CMake <aref="https://github.com/HDFGroup/hdf5_plugins/blob/master/docs/USING_HDF5_AND_CMake.txt">USING_HDF5_AND_CMake

    +

    See the documentation at hdf5_plugins/docs folder. In particular: INSTALL_With_CMake USING_HDF5_AND_CMake

    diff --git a/develop/_h5_p_lextern_8h.html b/develop/_h5_p_lextern_8h.html index ba9eb17d368..d28b68d0885 100644 --- a/develop/_h5_p_lextern_8h.html +++ b/develop/_h5_p_lextern_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h5_p_lmodule_8h.html b/develop/_h5_p_lmodule_8h.html index 34b13f95b53..e430030e91a 100644 --- a/develop/_h5_p_lmodule_8h.html +++ b/develop/_h5_p_lmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h5_p_lpublic_8h.html b/develop/_h5_p_lpublic_8h.html index 5276014ad58..e62cc991bab 100644 --- a/develop/_h5_p_lpublic_8h.html +++ b/develop/_h5_p_lpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    diff --git a/develop/_h5_p_t__u_g.html b/develop/_h5_p_t__u_g.html index 70ffc40bd0b..38bd6740bf1 100644 --- a/develop/_h5_p_t__u_g.html +++ b/develop/_h5_p_t__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_p_t__u_g.html',''); initResizable(
    HDF5 High Level Packet Table
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction
    diff --git a/develop/_h5_p_tpublic_8h.html b/develop/_h5_p_tpublic_8h.html index 6eab2295d92..725f0da3195 100644 --- a/develop/_h5_p_tpublic_8h.html +++ b/develop/_h5_p_tpublic_8h.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_pff_8_f90.html b/develop/_h5_pff_8_f90.html index dcbd31c072a..0a7baa34583 100644 --- a/develop/_h5_pff_8_f90.html +++ b/develop/_h5_pff_8_f90.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_pmodule_8h.html b/develop/_h5_pmodule_8h.html index 8961970383c..1b12ae2d852 100644 --- a/develop/_h5_pmodule_8h.html +++ b/develop/_h5_pmodule_8h.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_ppublic_8h.html b/develop/_h5_ppublic_8h.html index 70b0141a6e0..fdbd89c3c6f 100644 --- a/develop/_h5_ppublic_8h.html +++ b/develop/_h5_ppublic_8h.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_pred_type_8h.html b/develop/_h5_pred_type_8h.html index 3f85fa29783..f46cef0d897 100644 --- a/develop/_h5_pred_type_8h.html +++ b/develop/_h5_pred_type_8h.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_prop_list_8h.html b/develop/_h5_prop_list_8h.html index 9ccf97a8838..85bd845a6dc 100644 --- a/develop/_h5_prop_list_8h.html +++ b/develop/_h5_prop_list_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    diff --git a/develop/_h5_r__u_g.html b/develop/_h5_r__u_g.html index a7a80d1822f..7044499b880 100644 --- a/develop/_h5_r__u_g.html +++ b/develop/_h5_r__u_g.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_r_smodule_8h.html b/develop/_h5_r_smodule_8h.html index 3b5c45bb757..23577b11d77 100644 --- a/develop/_h5_r_smodule_8h.html +++ b/develop/_h5_r_smodule_8h.html @@ -37,7 +37,7 @@ Logo -
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    diff --git a/develop/_h5_rff_8_f90.html b/develop/_h5_rff_8_f90.html index cb9d510c055..b8a26395040 100644 --- a/develop/_h5_rff_8_f90.html +++ b/develop/_h5_rff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_rmodule_8h.html b/develop/_h5_rmodule_8h.html index fe737a36d82..48b1885d093 100644 --- a/develop/_h5_rmodule_8h.html +++ b/develop/_h5_rmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_rpublic_8h.html b/develop/_h5_rpublic_8h.html index e0197148738..006d1b56d76 100644 --- a/develop/_h5_rpublic_8h.html +++ b/develop/_h5_rpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_s__u_g.html b/develop/_h5_s__u_g.html index 2ba37d9bb78..79eff7e7984 100644 --- a/develop/_h5_s__u_g.html +++ b/develop/_h5_s__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -132,7 +132,7 @@ Introduction

    This chapter explains the dataspace object and its use in dataset and attribute creation and data transfer. It also describes selection operations on a dataspace used to implement sub‐setting, sub‐sampling, and scatter‐gather access to datasets.

    Dataspace Function Summaries

    -
    See also
    Dataspaces (H5S) reference manual provides a reference list of dataspace functions, the Dataspaces (H5S) APIs.
    +

    see Dataspaces (H5S) reference manual provides a reference list of dataspace functions, the H5S APIs.

    Definition of Dataspace Objects and the Dataspace Programming Model

    This section introduces the notion of the HDF5 dataspace object and a programming model for creating and working with dataspaces.

    @@ -724,22 +724,9 @@ References

    Another use of selections is to store a reference to a region of a dataset in the file or an external file. An HDF5 object reference object is a pointer to an object (attribute, dataset, group, or committed datatype) in the file or an external file. A selection can be used to create a pointer to a set of selected elements of a dataset, called a region reference. The selection can be either a point selection or a hyperslab selection.

    A region reference is an object maintained by the HDF5 Library. The region reference can be stored in a dataset or attribute, and then read. The dataset or attribute is defined to have the special datatype, H5T_STD_REF.

    To discover the elements and/or read the data, the region reference can be dereferenced to obtain the identifiers for the dataset and dataspace.

    -

    For more information,

    See also
    subsubsec_datatype_other_refs.
    +

    For more information,

    See also
    Reference.

    Example Uses for Region References

    -

    -Creating References to Regions

    -

    -Reading References to Regions

    -

    -Deprecated References to Dataset Regions

    -

    The API described in this section was deprecated since HDF5 1.12.0. Shown are examples and usage in use by applications written before 1.12.0.

    -

    Another use of selections is to store a reference to a region of a dataset. An HDF5 object reference object is a pointer to an object (dataset, group, or committed datatype) in the file. A selection can be used to create a pointer to a set of selected elements of a dataset, called a region reference. The selection can be either a point selection or a hyperslab selection.

    -

    A region reference is an object maintained by the HDF5 Library. The region reference can be stored in a dataset or attribute, and then read. The dataset or attribute is defined to have the special datatype, H5T_STD_REF_DSETREG.

    -

    To discover the elements and/or read the data, the region reference can be dereferenced. The H5Rdereference call returns an identifier for the dataset, and then the selected dataspace can be retrieved with a call to H5Rget_region(). The selected dataspace can be used to read the selected data elements.

    -

    For more information,

    See also
    subsubsec_datatype_other_refs.
    -

    -Deprecated Example Uses for Region References

    Region references are used to implement stored pointers to data within a dataset. For example, features in a large dataset might be indexed by a table. See the figure below. This table could be stored as an HDF5 dataset with a compound datatype, for example, with a field for the name of the feature and a region reference to point to the feature in the dataset. See the second figure below.

    @@ -757,6 +744,141 @@ Features indexed by a table Storing the table with a compound datatype
    +

    +Creating References to Regions

    +

    To create a region reference:

      +
    • 1. Create or open the dataset that contains the region
    • +
    • 2. Get the dataspace for the dataset
    • +
    • 3. Define a selection that specifies the region
    • +
    • 4. Create a region reference using the dataset and dataspace with selection
    • +
    • 5. Write the region reference(s) to the desired dataset or attribute
    • +
    • 6. Release the region reference(s)
    • +
    +

    The figure below shows a diagram of a file with three datasets. Dataset D1 and D2 are two dimensional arrays of integers. Dataset R1 is a one dimensional array of references to regions in D1 and D2. The regions can be any valid selection of the dataspace of the target dataset.

    + + +
    + +
    +A file with three datasets
    +
    +

    Note: In the figure above, R1 is a 1 D array of region pointers; each pointer refers to a selection in one dataset.

    +

    The example below shows code to create the array of region references. The references are created in an array of type H5R_ref_t. Each region is defined as a selection on the dataspace of the dataset, and a reference is created using H5Rcreate_region(). The call to H5Rcreate_region() specifies the file, dataset, and the dataspace with selection.

    +

    Create an array of region references

    // create an array of 4 region references
    +
    H5R_ref_t ref[4];
    +
    +
    // Create a reference to the first hyperslab in the first Dataset.
    +
    offset[0] = 1; offset[1] = 1;
    +
    count[0] = 3; count[1] = 2;
    +
    status = H5Sselect_hyperslab(space_id, H5S_SELECT_SET, offset, NULL, count, NULL);
    +
    status = H5Rcreate_region(file_id, "D1", space_id, H5P_DEFAULT, &ref[0]);
    +
    +
    // The second reference is to a union of hyperslabs in the first Dataset
    +
    offset[0] = 5; offset[1] = 3;
    +
    count[0] = 1; count[1] = 4;
    +
    status = H5Sselect_none(space_id);
    +
    status = H5Sselect_hyperslab(space_id, H5S_SELECT_SET, offset, NULL, count, NULL);
    +
    offset[0] = 6; offset[1] = 5;
    +
    count[0] = 1; count[1] = 2;
    +
    status = H5Sselect_hyperslab(space_id, H5S_SELECT_OR, offset, NULL, count, NULL);
    +
    status = H5Rcreate_region(file_id, "D1", space_id, H5P_DEFAULT, &ref[1]);
    +
    +
    // the fourth reference is to a selection of points in the first Dataset
    +
    status = H5Sselect_none(space_id);
    +
    coord[0][0] = 4; coord[0][1] = 4;
    +
    coord[1][0] = 2; coord[1][1] = 6;
    +
    coord[2][0] = 3; coord[2][1] = 7;
    +
    coord[3][0] = 1; coord[3][1] = 5;
    +
    coord[4][0] = 5; coord[4][1] = 8;
    +
    +
    status = H5Sselect_elements(space_id, H5S_SELECT_SET, num_points, (const hssize_t **)coord);
    +
    status = H5Rcreate_region(file_id, "D1", space_id, H5P_DEFAULT, &ref[3]);
    +
    +
    // the third reference is to a hyperslab in the second Dataset
    +
    offset[0] = 0; offset[1] = 0;
    +
    count[0] = 4; count[1] = 6;
    +
    status = H5Sselect_hyperslab(space_id2, H5S_SELECT_SET, offset, NULL, count, NULL);
    +
    status = H5Rcreate_region(file_id, "D2", space_id2, H5P_DEFAULT, &ref[2]);
    +
    herr_t H5Rcreate_region(hid_t loc_id, const char *name, hid_t space_id, hid_t oapl_id, H5R_ref_t *ref_ptr)
    Creates a region reference.
    +
    herr_t H5Sselect_none(hid_t spaceid)
    Resets the selection region to include no elements.
    +
    Definition H5Rpublic.h:97
    +

    When all the references are created, the array of references is written to the dataset R1. The dataset is declared to have datatype H5T_STD_REF. See the example below. Also, note the release of the references afterwards.

    +

    Write the array of references to a dataset

    Hsize_t dimsr[1];
    +
    dimsr[0] = 4;
    +
    +
    // Dataset with references.
    +
    spacer_id = H5Screate_simple(1, dimsr, NULL);
    +
    dsetr_id = H5Dcreate(file_id, "R1", H5T_STD_REF_DSETREG, spacer_id, H5P_DEFAULT, H5P_DEFAULT,
    + +
    +
    // Write dataset with the references.
    + +
    +
    status = H5Rdestroy(&ref[0]);
    +
    status = H5Rdestroy(&ref[1]);
    +
    status = H5Rdestroy(&ref[0]);
    +
    status = H5Rdestroy(&ref[1]);
    +
    #define H5S_ALL
    Definition H5Spublic.h:32
    +
    #define H5Dcreate
    Definition H5version.h:892
    +
    herr_t H5Rdestroy(H5R_ref_t *ref_ptr)
    Closes a reference.
    +
    #define H5T_STD_REF_DSETREG
    Definition H5Tpublic.h:423
    +

    When creating region references, the following rules are enforced.

      +
    • The selection must be a valid selection for the target dataset, just as when transferring data
    • +
    • The dataset must exist in the file when the reference is created; H5Rcreate_region
    • +
    • The target dataset must be in the same file as the stored reference
    • +
    +

    +Reading References to Regions

    +

    To retrieve data from a region reference, the reference must be read from the file, and then the data can be retrieved. The steps are:

      +
    • 1. Open the dataset or attribute containing the reference objects
    • +
    • 2. Read the reference object(s)
    • +
    • 3. For each region reference, get the dataset (H5Ropen_object) and dataspace (H5Ropen_region)
    • +
    • 4. Use the dataspace and datatype to discover what space is needed to store the data, allocate the correct storage and create a dataspace and datatype to define the memory data layout
    • +
    • 5. Release the region reference(s)
    • +
    +

    The example below shows code to read an array of region references from a dataset, and then read the data from the first selected region. Note that the region reference has information that records the dataset (within the file) and the selection on the dataspace of the dataset. After dereferencing the regions reference, the datatype, number of points, and some aspects of the selection can be discovered. (For a union of hyperslabs, it may not be possible to determine the exact set of hyperslabs that has been combined.) The table below the code example shows the inquiry functions.

    +

    When reading data from a region reference, the following rules are enforced:

      +
    • The target dataset must be present and accessible in the file
    • +
    • The selection must be a valid selection for the dataset
    • +
    +

    Read an array of region references; read from the first selection

    dsetr_id = H5Dopen (file_id, "R1", H5P_DEFAULT);
    +
    status = H5Dread(dsetr_id, H5T_STD, H5S_ALL, H5S_ALL, H5P_DEFAULT, ref_out);
    +
    +
    // Dereference the first reference.
    +
    // 1) get the dataset (H5Ropen_object)
    +
    // 2) get the selected dataspace (H5Ropen_region)
    +
    +
    dsetv_id = H5Ropen_object(&ref_out[0], H5P_DEFAULT, H5P_DEFAULT);
    +
    space_id = H5Ropen_region(&ref_out[0], H5P_DEFAULT, H5P_DEFAULT);
    +
    +
    // Discover how many points and shape of the data
    +
    ndims = H5Sget_simple_extent_ndims(space_id);
    +
    H5Sget_simple_extent_dims(space_id,dimsx,NULL);
    +
    +
    // Read and display hyperslab selection from the dataset.
    +
    dimsy[0] = H5Sget_select_npoints(space_id);
    +
    spacex_id = H5Screate_simple(1, dimsy, NULL);
    +
    +
    status = H5Dread(dsetv_id, H5T_NATIVE_INT, H5S_ALL, space_id, H5P_DEFAULT, data_out);
    +
    printf("Selected hyperslab: ");
    +
    for (i = 0; i < 8; i++) {
    +
    printf("\n");
    +
    for (j = 0; j < 10; j++)
    +
    printf("%d ", data_out[i][j]);
    +
    }
    +
    printf("\n");
    +
    +
    status = H5Rdestroy(&ref_out[0]);
    +
    #define H5Dopen
    Definition H5version.h:903
    +
    hid_t H5Ropen_region(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id)
    Sets up a dataspace and selection as specified by a region reference.
    +
    hid_t H5Ropen_object(H5R_ref_t *ref_ptr, hid_t rapl_id, hid_t oapl_id)
    Opens the HDF5 object referenced.
    +
    hssize_t H5Sget_select_npoints(hid_t spaceid)
    Determines the number of elements in a dataspace selection.
    +

    +Deprecated References to Dataset Regions

    +

    The API described in this section was deprecated since HDF5 1.12.0. Shown are examples and usage in use by applications written before 1.12.0.

    +

    Another use of selections is to store a reference to a region of a dataset. An HDF5 object reference object is a pointer to an object (dataset, group, or committed datatype) in the file. A selection can be used to create a pointer to a set of selected elements of a dataset, called a region reference. The selection can be either a point selection or a hyperslab selection.

    +

    A region reference is an object maintained by the HDF5 Library. The region reference can be stored in a dataset or attribute, and then read. The dataset or attribute is defined to have the special datatype, H5T_STD_REF_DSETREG.

    +

    To discover the elements and/or read the data, the region reference can be dereferenced. The H5Rdereference call returns an identifier for the dataset, and then the selected dataspace can be retrieved with a call to H5Rget_region(). The selected dataspace can be used to read the selected data elements.

    Deprecated Creating References to Regions

    To create a region reference:

      @@ -813,7 +935,6 @@ A file with three datasets
    status = H5Rcreate(&ref[2], file_id, "D2", H5R_DATASET_REGION, space_id2);
    #define H5R_DATASET_REGION
    Definition H5Rpublic.h:625
    herr_t H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, hid_t space_id)
    Creates a reference.
    -
    herr_t H5Sselect_none(hid_t spaceid)
    Resets the selection region to include no elements.
    Definition H5Rpublic.h:86

    When all the references are created, the array of references is written to the dataset R1. The dataset is declared to have datatype H5T_STD_REF_DSETREG. See the example below.

    Deprecated Write the array of references to a dataset

    Hsize_t dimsr[1];
    @@ -826,9 +947,6 @@ A file with three datasets
    // Write dataset with the references.
    -
    #define H5S_ALL
    Definition H5Spublic.h:32
    -
    #define H5Dcreate
    Definition H5version.h:892
    -
    #define H5T_STD_REF_DSETREG
    Definition H5Tpublic.h:423

    When creating region references, the following rules are enforced.

    • The selection must be a valid selection for the target dataset, just as when transferring data
    • The dataset must exist in the file when the reference is created; H5Rcreate
    • @@ -873,11 +991,11 @@ Deprecated Reading References to Regions
      printf("%d ", data_out[i][j]);
      }
      printf("\n");
      -
      #define H5Dopen
      Definition H5version.h:903
      hid_t H5Rget_region(hid_t dataset, H5R_type_t ref_type, const void *ref)
      Sets up a dataspace and selection as specified by a region reference.
      #define H5Rdereference
      Definition H5version.h:1217
      -
      hssize_t H5Sget_select_npoints(hid_t spaceid)
      Determines the number of elements in a dataspace selection.
      -
    +

    +Functions

    +
    diff --git a/develop/_h5_s_mmodule_8h.html b/develop/_h5_s_mmodule_8h.html index e2b2914f847..8ca8d163cd5 100644 --- a/develop/_h5_s_mmodule_8h.html +++ b/develop/_h5_s_mmodule_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_sff_8_f90.html b/develop/_h5_sff_8_f90.html index 4c15d1edfc0..a103cae246e 100644 --- a/develop/_h5_sff_8_f90.html +++ b/develop/_h5_sff_8_f90.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_smodule_8h.html b/develop/_h5_smodule_8h.html index 3ca5e4403b7..2035121d580 100644 --- a/develop/_h5_smodule_8h.html +++ b/develop/_h5_smodule_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_spublic_8h.html b/develop/_h5_spublic_8h.html index 6854563a58b..c8f6e1a939d 100644 --- a/develop/_h5_spublic_8h.html +++ b/develop/_h5_spublic_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_str_type_8h.html b/develop/_h5_str_type_8h.html index b64f68a04d5..2b3e00be0e7 100644 --- a/develop/_h5_str_type_8h.html +++ b/develop/_h5_str_type_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/_h5_t__u_g.html b/develop/_h5_t__u_g.html index 35c987532dc..c5a662c89d6 100644 --- a/develop/_h5_t__u_g.html +++ b/develop/_h5_t__u_g.html @@ -37,7 +37,7 @@ @@ -451,7 +451,7 @@ Creating and Using User‐defined Datatypes

    User-defined types can be used to define the layout of data in memory; examples might match some platform specific number format or application defined bit-field. The user-defined type can also describe data in the file such as an application-defined format. The user-defined types can be translated to and from standard types of the same class, as described above.

    Datatype Function Summaries

    -
    See also
    Datatypes (H5T) reference manual provides a reference list of datatype functions, the Datatypes (H5T) APIs.
    +

    see Datatypes (H5T) reference manual provides a reference list of datatype functions, the H5T APIs.

    Programming Model for Datatypes

    The HDF5 Library implements an object-oriented model of datatypes. HDF5 datatypes are organized as a logical set of base types, or datatype classes. The HDF5 Library manages datatypes as objects. The HDF5 datatype API manipulates the datatype objects through C function calls. The figure below shows the abstract view of the datatype object. The table below shows the methods (C functions) that operate on datatype objects. New datatypes can be created from scratch or copied from existing datatypes.

    @@ -931,7 +931,8 @@ Memory layout of a compound datatype that requires padding
    H5Dwrite (dataset_id, s1_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
    #define H5T_NATIVE_FLOAT
    Definition H5Tpublic.h:815
    -

    The example below shows the content of the file written on a little-endian machine. Create and write a little-endian dataset with a compound datatype in C

    HDF5 “SDScompound.h5” {
    +

    The example below shows the content of the file written on a little-endian machine.

    +

    Create and write a little-endian dataset with a compound datatype in C

    HDF5 “SDScompound.h5” {
    GROUP “/” {
    DATASET “ArrayOfStructures” {
    DATATYPE H5T_COMPOUND {
    @@ -1006,7 +1007,8 @@ Memory layout of a compound datatype that requires padding
    #define H5P_DATASET_XFER
    Definition H5Ppublic.h:76
    herr_t H5Pset_preserve(hid_t plist_id, hbool_t status)
    Sets the dataset transfer property list status.
    hid_t H5Pcreate(hid_t cls_id)
    Creates a new property list as an instance of a property list class.
    -

    The figure below shows the content of the file written on a little-endian machine. Only float and double fields are written. The default fill value is used to initialize the unwritten integer field. Writing floats and doubles to a dataset on a little-endian system

    HDF5 “SDScompound.h5” {
    +

    The figure below shows the content of the file written on a little-endian machine. Only float and double fields are written. The default fill value is used to initialize the unwritten integer field.

    +

    Writing floats and doubles to a dataset on a little-endian system

    HDF5 “SDScompound.h5” {
    GROUP “/” {
    DATASET “ArrayOfStructures” {
    DATATYPE H5T_COMPOUND {
    @@ -1035,7 +1037,8 @@ Memory layout of a compound datatype that requires padding
    }
    }
    }
    -

    The example below contains a Fortran example that creates and writes a dataset with a compound datatype. As this example illustrates, writing and reading compound datatypes in Fortran is always done by fields. The content of the written file is the same as shown in the example above. Create and write a dataset with a compound datatype in Fortran

    ! One cannot write an array of a derived datatype in
    +

    The example below contains a Fortran example that creates and writes a dataset with a compound datatype. As this example illustrates, writing and reading compound datatypes in Fortran is always done by fields. The content of the written file is the same as shown in the example above.

    +

    Create and write a dataset with a compound datatype in Fortran

    ! One cannot write an array of a derived datatype in
    ! Fortran.
    TYPE s1_t
    INTEGER a
    @@ -1459,12 +1462,14 @@ Strings

    First, a dataset may have a dataset with datatype H5T_NATIVE_CHAR with each character of the string as an element of the dataset. This will store an unstructured block of text data, but gives little indication of any structure in the text. See item a in the figure above.

    A second alternative is to store the data using the datatype class H5T_STRING with each element a fixed length. See item b in the figure above. In this approach, each element might be a word or a sentence, addressed by the dataspace. The dataset reserves space for the specified number of characters, although some strings may be shorter. This approach is simple and usually is fast to access, but can waste storage space if the length of the Strings varies.

    A third alternative is to use a variable-length datatype. See item c in the figure above. This can be done using the standard mechanisms described above. The program would use vl_t structures to write and read the data.

    -

    A fourth alternative is to use a special feature of the string datatype class to set the size of the datatype to H5T_VARIABLE. See item c in the figure above. The example below shows a declaration of a datatype of type H5T_C_S1 which is set to H5T_VARIABLE. The HDF5 Library automatically translates between this and the vl_t structure. Note: the H5T_VARIABLE size can only be used with string datatypes. Set the string datatype size to H5T_VARIABLE

    tid1 = H5Tcopy (H5T_C_S1);
    +

    A fourth alternative is to use a special feature of the string datatype class to set the size of the datatype to H5T_VARIABLE. See item c in the figure above. The example below shows a declaration of a datatype of type H5T_C_S1 which is set to H5T_VARIABLE. The HDF5 Library automatically translates between this and the vl_t structure. Note: the H5T_VARIABLE size can only be used with string datatypes.

    +

    Set the string datatype size to H5T_VARIABLE

    tid1 = H5Tcopy (H5T_C_S1);
    ret = H5Tset_size (tid1, H5T_VARIABLE);
    #define H5T_VARIABLE
    Definition H5Tpublic.h:207
    herr_t H5Tset_size(hid_t type_id, size_t size)
    Sets size for a datatype.
    #define H5T_C_S1
    Definition H5Tpublic.h:489
    -

    Variable-length strings can be read into C strings (in other words, pointers to zero terminated arrays of char). See the example below. Read variable-length strings into C strings

    char *rdata[SPACE1_DIM1];
    +

    Variable-length strings can be read into C strings (in other words, pointers to zero terminated arrays of char). See the example below.

    +

    Read variable-length strings into C strings

    char *rdata[SPACE1_DIM1];
    ret = H5Dread(dataset, tid1, H5S_ALL, H5S_ALL, xfer_pid, rdata);
    @@ -1553,7 +1558,8 @@ Deprecated Reference

    ENUM

    The enum datatype implements a set of (name, value) pairs, similar to C/C++ enum. The values are currently limited to native integer datatypes. Each name can be the name of only one value, and each value can have only one name.

    -

    The data elements of the ENUMERATION are stored according to the datatype. An example would be as an array of integers. The example below shows an example of how to create an enumeration with five elements. The elements map symbolic names to 2-byte integers. See the table below. Create an enumeration with five elements

    hid_t hdf_en_colors;
    +

    The data elements of the ENUMERATION are stored according to the datatype. An example would be as an array of integers. The example below shows an example of how to create an enumeration with five elements. The elements map symbolic names to 2-byte integers. See the table below.

    +

    Create an enumeration with five elements

    hid_t hdf_en_colors;
    short val;
    hdf_en_colors = H5Tcreate(H5T_ENUM, sizeof(short));
    @@ -1899,7 +1905,8 @@ Life cycle of a datatype
    Transient datatype states: modifiable, read-only, and immutable
    The inquiry functions

    diff --git a/develop/_h5_s_lmodule_8h.html b/develop/_h5_s_lmodule_8h.html index 5168b8b2d27..754cb2df475 100644 --- a/develop/_h5_s_lmodule_8h.html +++ b/develop/_h5_s_lmodule_8h.html @@ -37,7 +37,7 @@
    -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    -

    To create two or more datasets that share a common datatype, first commit the datatype, and then use that datatype to create the datasets. See the example below. Create a shareable datatype

    hid_t t1 = ...some transient type...;
    +

    To create two or more datasets that share a common datatype, first commit the datatype, and then use that datatype to create the datasets. See the example below.

    +

    Create a shareable datatype

    hid_t t1 = ...some transient type...;
    H5Tcommit (file, “shared_type”, t1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
    hid_t dset1 = H5Dcreate (file, “dset1”, t1, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
    hid_t dset2 = H5Dcreate (file, “dset2”, t1, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
    @@ -1946,7 +1953,8 @@ Data Transfer: Datatype Conversion and Selection Enumeration No field All bits set -

    For example, when reading data from a dataset, the source datatype is the datatype set when the dataset was created, and the destination datatype is the description of the storage layout in memory. The destination datatype must be specified in the H5Dread call. The example below shows an example of reading a dataset of 32-bit integers. The figure below the example shows the data transformation that is performed. Specify the destination datatype with H5Dread

    // Stored as H5T_STD_BE32
    +

    For example, when reading data from a dataset, the source datatype is the datatype set when the dataset was created, and the destination datatype is the description of the storage layout in memory. The destination datatype must be specified in the H5Dread call. The example below shows an example of reading a dataset of 32-bit integers. The figure below the example shows the data transformation that is performed.

    +

    Specify the destination datatype with H5Dread

    // Stored as H5T_STD_BE32
    // Use the native memory order in the destination
    mem_type_id = H5Tcopy(H5T_NATIVE_INT);
    status = H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf);
    @@ -2009,7 +2017,8 @@ Text Descriptions of Datatypes: Conversion to and from

    While H5LTtext_to_dtype can be used to generate any sort of datatype, it is particularly useful for complex datatypes.

    H5LTdtype_to_text is most likely to be used in two sorts of situations: when a datatype must be closely examined for debugging purpose or to create a portable text description of the datatype that can then be used to recreate the datatype on other platforms or in other applications.

    These two functions work for all valid HDF5 datatypes except time, bitfield, and reference datatypes.

    -

    The currently supported text format used by H5LTtext_to_dtype and H5LTdtype_to_text is the data description language (DDL) and conforms to the DDL in BNF for HDF5 1.14.4 and above. The portion of the DDL in BNF for HDF5 1.14.4 and above that defines HDF5 datatypes appears below. The definition of HDF5 datatypes from the HDF5 DDL

    <datatype> ::= <atomic_type> | <compound_type> | <variable_length_type> | <array_type>
    +

    The currently supported text format used by H5LTtext_to_dtype and H5LTdtype_to_text is the data description language (DDL) and conforms to the DDL in BNF for HDF5 1.14.4 and above. The portion of the DDL in BNF for HDF5 1.14.4 and above that defines HDF5 datatypes appears below.

    +

    The definition of HDF5 datatypes from the HDF5 DDL

    <datatype> ::= <atomic_type> | <compound_type> | <variable_length_type> | <array_type>
    <atomic_type> ::= <integer> | <float> | <time> | <string> |
    <bitfield> | <opaque> | <reference> | <enum>
    diff --git a/develop/_h5_t_b__u_g.html b/develop/_h5_t_b__u_g.html index 9a37b1dfec3..912114ec0a1 100644 --- a/develop/_h5_t_b__u_g.html +++ b/develop/_h5_t_b__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_t_b__u_g.html',''); initResizable(
    HDF5 High Level Table
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction
    diff --git a/develop/_h5_t_bff_8_f90.html b/develop/_h5_t_bff_8_f90.html index 7495b73b562..5ea6a973171 100644 --- a/develop/_h5_t_bff_8_f90.html +++ b/develop/_h5_t_bff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_bpublic_8h.html b/develop/_h5_t_bpublic_8h.html index bf77bf2c112..df41eba44d3 100644 --- a/develop/_h5_t_bpublic_8h.html +++ b/develop/_h5_t_bpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__c_p__u_g.html b/develop/_h5_t_o_o_l__c_p__u_g.html index 8976196e70b..de3da1a1f00 100644 --- a/develop/_h5_t_o_o_l__c_p__u_g.html +++ b/develop/_h5_t_o_o_l__c_p__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__c_r__u_g.html b/develop/_h5_t_o_o_l__c_r__u_g.html index 05eefee2ec5..d18b721a3b5 100644 --- a/develop/_h5_t_o_o_l__c_r__u_g.html +++ b/develop/_h5_t_o_o_l__c_r__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__d_f__u_g.html b/develop/_h5_t_o_o_l__d_f__u_g.html index 6040825ffb7..3085cad767f 100644 --- a/develop/_h5_t_o_o_l__d_f__u_g.html +++ b/develop/_h5_t_o_o_l__d_f__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__d_g__u_g.html b/develop/_h5_t_o_o_l__d_g__u_g.html index 5dddb2cdcb1..c606d5e27e4 100644 --- a/develop/_h5_t_o_o_l__d_g__u_g.html +++ b/develop/_h5_t_o_o_l__d_g__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__d_p__u_g.html b/develop/_h5_t_o_o_l__d_p__u_g.html index 0a2124117cd..aee6d1e42b0 100644 --- a/develop/_h5_t_o_o_l__d_p__u_g.html +++ b/develop/_h5_t_o_o_l__d_p__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__d_t__u_g.html b/develop/_h5_t_o_o_l__d_t__u_g.html index 82def431e4e..6887d3a4b6b 100644 --- a/develop/_h5_t_o_o_l__d_t__u_g.html +++ b/develop/_h5_t_o_o_l__d_t__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__f_c__u_g.html b/develop/_h5_t_o_o_l__f_c__u_g.html index 65a19344e9b..cfa1e45f7ee 100644 --- a/develop/_h5_t_o_o_l__f_c__u_g.html +++ b/develop/_h5_t_o_o_l__f_c__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__i_m__u_g.html b/develop/_h5_t_o_o_l__i_m__u_g.html index d21d61161c9..ac963977366 100644 --- a/develop/_h5_t_o_o_l__i_m__u_g.html +++ b/develop/_h5_t_o_o_l__i_m__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__j_a_m__u_g.html b/develop/_h5_t_o_o_l__j_a_m__u_g.html index 4d737a827ed..21358e2c21b 100644 --- a/develop/_h5_t_o_o_l__j_a_m__u_g.html +++ b/develop/_h5_t_o_o_l__j_a_m__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__l_s__u_g.html b/develop/_h5_t_o_o_l__l_s__u_g.html index 00eb64d2fde..0a5632888c0 100644 --- a/develop/_h5_t_o_o_l__l_s__u_g.html +++ b/develop/_h5_t_o_o_l__l_s__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__m_g__u_g.html b/develop/_h5_t_o_o_l__m_g__u_g.html index 198d7b10844..9374f948fec 100644 --- a/develop/_h5_t_o_o_l__m_g__u_g.html +++ b/develop/_h5_t_o_o_l__m_g__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__r_p__u_g.html b/develop/_h5_t_o_o_l__r_p__u_g.html index 0efba509c10..c6e4e5599dd 100644 --- a/develop/_h5_t_o_o_l__r_p__u_g.html +++ b/develop/_h5_t_o_o_l__r_p__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__r_t__u_g.html b/develop/_h5_t_o_o_l__r_t__u_g.html index 445002c1b17..c5b81caae65 100644 --- a/develop/_h5_t_o_o_l__r_t__u_g.html +++ b/develop/_h5_t_o_o_l__r_t__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__s_t__u_g.html b/develop/_h5_t_o_o_l__s_t__u_g.html index 6800f7b7043..dafb83dc5ca 100644 --- a/develop/_h5_t_o_o_l__s_t__u_g.html +++ b/develop/_h5_t_o_o_l__s_t__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_o_o_l__w_h__u_g.html b/develop/_h5_t_o_o_l__w_h__u_g.html index 993b5810f22..9f75543efe2 100644 --- a/develop/_h5_t_o_o_l__w_h__u_g.html +++ b/develop/_h5_t_o_o_l__w_h__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_sdevelop_8h.html b/develop/_h5_t_sdevelop_8h.html index 462a0f14215..96d81065824 100644 --- a/develop/_h5_t_sdevelop_8h.html +++ b/develop/_h5_t_sdevelop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_t_smodule_8h.html b/develop/_h5_t_smodule_8h.html index f23574d7a73..1fcb90f6644 100644 --- a/develop/_h5_t_smodule_8h.html +++ b/develop/_h5_t_smodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_tdevelop_8h.html b/develop/_h5_tdevelop_8h.html index 9abd5dec6c9..f3db4ab64d0 100644 --- a/develop/_h5_tdevelop_8h.html +++ b/develop/_h5_tdevelop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_tff_8_f90.html b/develop/_h5_tff_8_f90.html index dd4f2f66620..8673c99fbe1 100644 --- a/develop/_h5_tff_8_f90.html +++ b/develop/_h5_tff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_tmodule_8h.html b/develop/_h5_tmodule_8h.html index 7ca1816bec2..9c5d99ee6f2 100644 --- a/develop/_h5_tmodule_8h.html +++ b/develop/_h5_tmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_tpublic_8h.html b/develop/_h5_tpublic_8h.html index 91d3b4b7cfc..e07a5cd603a 100644 --- a/develop/_h5_tpublic_8h.html +++ b/develop/_h5_tpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_v_l__u_g.html b/develop/_h5_v_l__u_g.html index 6b530cfe1f5..08f99d42489 100644 --- a/develop/_h5_v_l__u_g.html +++ b/develop/_h5_v_l__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -148,7 +148,7 @@ VOL Connectors
  • and even as an internal connector, built into the HDF5 library itself
  • This section mostly focuses on external connectors, both libraries and plugins, as those are expected to be much more common than internal implementations.

    -

    A list of VOL connectors can be found here: Registered VOL Connectors

    +

    A list of VOL connectors can be found here: Registered VOL Connectors

    This list is incomplete and only includes the VOL connectors that have been registered with The HDF Group.

    Not every connector in this collection is actively maintained by The HDF Group. It simply serves as a single location where important VOL connectors can be found. See the documentation in a connector's repository to determine its development status and the parties responsible for it.

    A VOL template that contains build scripts (Autotools and CMake) and an empty VOL connector "shell" which can be copied and used as a starting point for building new connectors is located here: VOL Connector Template

    diff --git a/develop/_h5_v_lconnector_8h.html b/develop/_h5_v_lconnector_8h.html index 9baa10b6b6b..470beae2805 100644 --- a/develop/_h5_v_lconnector_8h.html +++ b/develop/_h5_v_lconnector_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_v_lconnector__passthru_8h.html b/develop/_h5_v_lconnector__passthru_8h.html index 0d8948d3760..800f690afd9 100644 --- a/develop/_h5_v_lconnector__passthru_8h.html +++ b/develop/_h5_v_lconnector__passthru_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_v_lff_8_f90.html b/develop/_h5_v_lff_8_f90.html index c8c8207ebff..ae1635b35ed 100644 --- a/develop/_h5_v_lff_8_f90.html +++ b/develop/_h5_v_lff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_v_lmodule_8h.html b/develop/_h5_v_lmodule_8h.html index 06c7f2e3314..3a7fa04796e 100644 --- a/develop/_h5_v_lmodule_8h.html +++ b/develop/_h5_v_lmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_v_lnative_8h.html b/develop/_h5_v_lnative_8h.html index 4583e7b2b54..0ef0cca33a6 100644 --- a/develop/_h5_v_lnative_8h.html +++ b/develop/_h5_v_lnative_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_v_lpublic_8h.html b/develop/_h5_v_lpublic_8h.html index ceb6971c09d..25854c0d46a 100644 --- a/develop/_h5_v_lpublic_8h.html +++ b/develop/_h5_v_lpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_var_len_type_8h.html b/develop/_h5_var_len_type_8h.html index b2cfc669181..5a6b6cb4ae0 100644 --- a/develop/_h5_var_len_type_8h.html +++ b/develop/_h5_var_len_type_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_z__u_g.html b/develop/_h5_z__u_g.html index 2f22c51c8c5..56495927876 100644 --- a/develop/_h5_z__u_g.html +++ b/develop/_h5_z__u_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_h5_z__u_g.html',''); initResizable();
    HDF5 Filters
    -
    Todo:
    Under Construction
    +
    Todo:
    Under Construction
    diff --git a/develop/_h5_zdevelop_8h.html b/develop/_h5_zdevelop_8h.html index d0f32e35642..9cc0f526cf5 100644 --- a/develop/_h5_zdevelop_8h.html +++ b/develop/_h5_zdevelop_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_zff_8_f90.html b/develop/_h5_zff_8_f90.html index be29192218f..5c5b7d63bc3 100644 --- a/develop/_h5_zff_8_f90.html +++ b/develop/_h5_zff_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_zmodule_8h.html b/develop/_h5_zmodule_8h.html index 371c3fc164b..7313400dee4 100644 --- a/develop/_h5_zmodule_8h.html +++ b/develop/_h5_zmodule_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5_zpublic_8h.html b/develop/_h5_zpublic_8h.html index c40ddb284df..9793002e610 100644 --- a/develop/_h5_zpublic_8h.html +++ b/develop/_h5_zpublic_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5f90global_8_f90.html b/develop/_h5f90global_8_f90.html index 4c760d2c2ae..3df7f8cace4 100644 --- a/develop/_h5f90global_8_f90.html +++ b/develop/_h5f90global_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h5fortkit_8_f90.html b/develop/_h5fortkit_8_f90.html index a6c9fcbd9c8..55465c06050 100644 --- a/develop/_h5fortkit_8_f90.html +++ b/develop/_h5fortkit_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5module_8h.html b/develop/_h5module_8h.html index 2ab446e9611..a7363a36d5f 100644 --- a/develop/_h5module_8h.html +++ b/develop/_h5module_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h5public_8h.html b/develop/_h5public_8h.html index 2636774724f..c1000e67b92 100644 --- a/develop/_h5public_8h.html +++ b/develop/_h5public_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -160,11 +160,11 @@ Macros   #define H5_VERS_RELEASE   0   -#define H5_VERS_SUBRELEASE   "" +#define H5_VERS_SUBRELEASE   "bca2806"   -#define H5_VERS_STR   "1.15.0" +#define H5_VERS_STR   "1.15.0-bca2806"   -#define H5_VERS_INFO   "HDF5 library version: 1.15.0" +#define H5_VERS_INFO   "HDF5 library version: 1.15.0-bca2806"   #define H5check()   H5check_version(H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE)   @@ -465,7 +465,7 @@ Functions
    - +
    #define H5_VERS_INFO   "HDF5 library version: 1.15.0"#define H5_VERS_INFO   "HDF5 library version: 1.15.0-bca2806"
    @@ -525,7 +525,7 @@ Functions
    - +
    #define H5_VERS_STR   "1.15.0"#define H5_VERS_STR   "1.15.0-bca2806"
    @@ -540,7 +540,7 @@ Functions
    - +
    #define H5_VERS_SUBRELEASE   ""#define H5_VERS_SUBRELEASE   "bca2806"
    @@ -599,7 +599,7 @@ Functions A library version is greater than the specified version number if its major version is larger than the specified major version number. If the major version numbers are the same, it is greater than the specified version number if its minor version is larger than the specified minor version number. If the minor version numbers are the same, then a library version would be greater than the specified version number if its release number is larger than the specified release number.

    The H5_VERSION_GE and H5_VERSION_LE macros are used at compile time to conditionally include or exclude code based on the version of the HDF5 library against which an application will be linked.

    The H5_VERSION_GE macro compares the version of the HDF5 library being used against the version number specified in the parameters.

    -

    For more information about release versioning, see HDF5 Library Release Version Numbers.

    +

    For more information about release versioning, see HDF5 Library Release Version Numbers.

    Since
    1.8.7
    @@ -652,7 +652,7 @@ Functions A library version is less than the specified version number if its major version is smaller than the specified major version number. If the major version numbers are the same, it is smaller than the specified version number if its minor version is smaller than the specified minor version number. If the minor version numbers are the same, then a library version would be smaller than the specified version number if its release number is smaller than the specified release number.

    The H5_VERSION_GE and H5_VERSION_LE macros are used at compile time to conditionally include or exclude code based on the version of the HDF5 library against which an application will be linked.

    The H5_VERSION_LE macro compares the version of the HDF5 library being used against the version number specified in the parameters.

    -

    For more information about release versioning, see HDF5 Library Release Version Numbers.

    +

    For more information about release versioning, see HDF5 Library Release Version Numbers.

    Since
    1.8.7
    diff --git a/develop/_h5version_8h.html b/develop/_h5version_8h.html index 5533d71dbb1..7a370b276d0 100644 --- a/develop/_h5version_8h.html +++ b/develop/_h5version_8h.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_8_f90.html b/develop/_h_d_f5_8_f90.html index b4289d77e11..70cc7427c1c 100644 --- a/develop/_h_d_f5_8_f90.html +++ b/develop/_h_d_f5_8_f90.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_attribute_create_8java.html b/develop/_h_d_f5_attribute_create_8java.html index d303e30d110..535b3e43e25 100644 --- a/develop/_h_d_f5_attribute_create_8java.html +++ b/develop/_h_d_f5_attribute_create_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_attribute_exception_8java.html b/develop/_h_d_f5_attribute_exception_8java.html index 840dd29a1e8..a6e98f38e37 100644 --- a/develop/_h_d_f5_attribute_exception_8java.html +++ b/develop/_h_d_f5_attribute_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_btree_exception_8java.html b/develop/_h_d_f5_btree_exception_8java.html index 2c9f49074e4..798055dd6b7 100644 --- a/develop/_h_d_f5_btree_exception_8java.html +++ b/develop/_h_d_f5_btree_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_c_o_n_s_t.html b/develop/_h_d_f5_c_o_n_s_t.html index 5f4f378f3c6..d40ba65385b 100644 --- a/develop/_h_d_f5_c_o_n_s_t.html +++ b/develop/_h_d_f5_c_o_n_s_t.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_constants_8java.html b/develop/_h_d_f5_constants_8java.html index bc3d3e40690..4dc6f47b367 100644 --- a/develop/_h_d_f5_constants_8java.html +++ b/develop/_h_d_f5_constants_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_data_filters_exception_8java.html b/develop/_h_d_f5_data_filters_exception_8java.html index 27f42065b00..269081c50a4 100644 --- a/develop/_h_d_f5_data_filters_exception_8java.html +++ b/develop/_h_d_f5_data_filters_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_data_storage_exception_8java.html b/develop/_h_d_f5_data_storage_exception_8java.html index 1f6867971e7..e012cb24cb0 100644 --- a/develop/_h_d_f5_data_storage_exception_8java.html +++ b/develop/_h_d_f5_data_storage_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_dataset_create_8java.html b/develop/_h_d_f5_dataset_create_8java.html index 4c3da0cb0e9..2532fd25ded 100644 --- a/develop/_h_d_f5_dataset_create_8java.html +++ b/develop/_h_d_f5_dataset_create_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_dataset_interface_exception_8java.html b/develop/_h_d_f5_dataset_interface_exception_8java.html index 85d77e5689f..b7475dd8ba1 100644 --- a/develop/_h_d_f5_dataset_interface_exception_8java.html +++ b/develop/_h_d_f5_dataset_interface_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_dataset_read_8java.html b/develop/_h_d_f5_dataset_read_8java.html index 5b59fdff217..412002945d3 100644 --- a/develop/_h_d_f5_dataset_read_8java.html +++ b/develop/_h_d_f5_dataset_read_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_dataspace_interface_exception_8java.html b/develop/_h_d_f5_dataspace_interface_exception_8java.html index 3cc062a5bfe..afd908ba8ba 100644 --- a/develop/_h_d_f5_dataspace_interface_exception_8java.html +++ b/develop/_h_d_f5_dataspace_interface_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_datatype_interface_exception_8java.html b/develop/_h_d_f5_datatype_interface_exception_8java.html index 6a606323806..9ef982f2f2b 100644 --- a/develop/_h_d_f5_datatype_interface_exception_8java.html +++ b/develop/_h_d_f5_datatype_interface_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_examples.html b/develop/_h_d_f5_examples.html index 9ebc44f74f8..6add874559b 100644 --- a/develop/_h_d_f5_examples.html +++ b/develop/_h_d_f5_examples.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -127,8 +127,8 @@ Examples

    How To Compile

    @@ -136,8 +136,8 @@ How To Compile

    Other Examples

    IDL, MATLAB, and NCL Examples for HDF-EOS Examples of how to access and visualize NASA HDF-EOS files using IDL, MATLAB, and NCL.

    -

    Miscellaneous Examples These (very old) examples resulted from working with users, and are not fully tested. Most of them are in C, with a few in Fortran and Java.

    -

    Using Special Values These examples show how to create special values in an HDF5 application.

    +

    Miscellaneous Examples These (very old) examples resulted from working with users, and are not fully tested. Most of them are in C, with a few in Fortran and Java.

    +

    Using Special Values These examples show how to create special values in an HDF5 application.

    diff --git a/develop/_h_d_f5_examples_2_r_e_a_d_m_e_8md.html b/develop/_h_d_f5_examples_2_r_e_a_d_m_e_8md.html index f748790f4ef..d528c36b958 100644 --- a/develop/_h_d_f5_examples_2_r_e_a_d_m_e_8md.html +++ b/develop/_h_d_f5_examples_2_r_e_a_d_m_e_8md.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_exception_8java.html b/develop/_h_d_f5_exception_8java.html index a94d691766a..9d85872a169 100644 --- a/develop/_h_d_f5_exception_8java.html +++ b/develop/_h_d_f5_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_external_file_list_exception_8java.html b/develop/_h_d_f5_external_file_list_exception_8java.html index 924ea24628b..41f105d3286 100644 --- a/develop/_h_d_f5_external_file_list_exception_8java.html +++ b/develop/_h_d_f5_external_file_list_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_file_create_8java.html b/develop/_h_d_f5_file_create_8java.html index 358275510e9..2543702bdac 100644 --- a/develop/_h_d_f5_file_create_8java.html +++ b/develop/_h_d_f5_file_create_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_file_interface_exception_8java.html b/develop/_h_d_f5_file_interface_exception_8java.html index d2464686691..c2253e16867 100644 --- a/develop/_h_d_f5_file_interface_exception_8java.html +++ b/develop/_h_d_f5_file_interface_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_file_structure_8java.html b/develop/_h_d_f5_file_structure_8java.html index 3303464e12b..0011fd98836 100644 --- a/develop/_h_d_f5_file_structure_8java.html +++ b/develop/_h_d_f5_file_structure_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_function_argument_exception_8java.html b/develop/_h_d_f5_function_argument_exception_8java.html index 9e20d7bb832..6f269382524 100644 --- a/develop/_h_d_f5_function_argument_exception_8java.html +++ b/develop/_h_d_f5_function_argument_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_function_entry_exit_exception_8java.html b/develop/_h_d_f5_function_entry_exit_exception_8java.html index 7dd86039085..5a36ad11107 100644 --- a/develop/_h_d_f5_function_entry_exit_exception_8java.html +++ b/develop/_h_d_f5_function_entry_exit_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_group_absolute_relative_create_8java.html b/develop/_h_d_f5_group_absolute_relative_create_8java.html index 05b9a54249c..12121e838dd 100644 --- a/develop/_h_d_f5_group_absolute_relative_create_8java.html +++ b/develop/_h_d_f5_group_absolute_relative_create_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_group_create_8java.html b/develop/_h_d_f5_group_create_8java.html index d92dd1718f3..83be5567a7d 100644 --- a/develop/_h_d_f5_group_create_8java.html +++ b/develop/_h_d_f5_group_create_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_group_dataset_create_8java.html b/develop/_h_d_f5_group_dataset_create_8java.html index 8abd7b7aa33..4c00145baa4 100644 --- a/develop/_h_d_f5_group_dataset_create_8java.html +++ b/develop/_h_d_f5_group_dataset_create_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_heap_exception_8java.html b/develop/_h_d_f5_heap_exception_8java.html index 33b368ff851..4390aac4d0e 100644 --- a/develop/_h_d_f5_heap_exception_8java.html +++ b/develop/_h_d_f5_heap_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_id_exception_8java.html b/develop/_h_d_f5_id_exception_8java.html index eef8bcbc9a6..3d64be06985 100644 --- a/develop/_h_d_f5_id_exception_8java.html +++ b/develop/_h_d_f5_id_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_internal_error_exception_8java.html b/develop/_h_d_f5_internal_error_exception_8java.html index 204840c1595..045cbf82871 100644 --- a/develop/_h_d_f5_internal_error_exception_8java.html +++ b/develop/_h_d_f5_internal_error_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_java_exception_8java.html b/develop/_h_d_f5_java_exception_8java.html index 4162c596d2a..97448ed416c 100644 --- a/develop/_h_d_f5_java_exception_8java.html +++ b/develop/_h_d_f5_java_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_l_i_b.html b/develop/_h_d_f5_l_i_b.html index 22bc078a48c..23f11b44ec4 100644 --- a/develop/_h_d_f5_l_i_b.html +++ b/develop/_h_d_f5_l_i_b.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_library_exception_8java.html b/develop/_h_d_f5_library_exception_8java.html index 42278086229..52b2e766dde 100644 --- a/develop/_h_d_f5_library_exception_8java.html +++ b/develop/_h_d_f5_library_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_low_level_i_o_exception_8java.html b/develop/_h_d_f5_low_level_i_o_exception_8java.html index 591de78cc34..e73d8cd99a3 100644 --- a/develop/_h_d_f5_low_level_i_o_exception_8java.html +++ b/develop/_h_d_f5_low_level_i_o_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_meta_data_cache_exception_8java.html b/develop/_h_d_f5_meta_data_cache_exception_8java.html index 63ed8e6e8c7..b7391ed97a7 100644 --- a/develop/_h_d_f5_meta_data_cache_exception_8java.html +++ b/develop/_h_d_f5_meta_data_cache_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_object_header_exception_8java.html b/develop/_h_d_f5_object_header_exception_8java.html index 42cf51773ac..d34c800a896 100644 --- a/develop/_h_d_f5_object_header_exception_8java.html +++ b/develop/_h_d_f5_object_header_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_property_list_interface_exception_8java.html b/develop/_h_d_f5_property_list_interface_exception_8java.html index 374e5b7d19b..c33bfdf4346 100644 --- a/develop/_h_d_f5_property_list_interface_exception_8java.html +++ b/develop/_h_d_f5_property_list_interface_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_reference_exception_8java.html b/develop/_h_d_f5_reference_exception_8java.html index fb9ed071c02..dfc798ef62e 100644 --- a/develop/_h_d_f5_reference_exception_8java.html +++ b/develop/_h_d_f5_reference_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_resource_unavailable_exception_8java.html b/develop/_h_d_f5_resource_unavailable_exception_8java.html index 0946da4f350..7ec2b9153a7 100644 --- a/develop/_h_d_f5_resource_unavailable_exception_8java.html +++ b/develop/_h_d_f5_resource_unavailable_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_subset_select_8java.html b/develop/_h_d_f5_subset_select_8java.html index d273cfc8038..6f098d9e3bc 100644 --- a/develop/_h_d_f5_subset_select_8java.html +++ b/develop/_h_d_f5_subset_select_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f5_symbol_table_exception_8java.html b/develop/_h_d_f5_symbol_table_exception_8java.html index bcd899ca98f..b9505b42cf5 100644 --- a/develop/_h_d_f5_symbol_table_exception_8java.html +++ b/develop/_h_d_f5_symbol_table_exception_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f_a_r_r_a_y.html b/develop/_h_d_f_a_r_r_a_y.html index 985e837fb94..4821ca02112 100644 --- a/develop/_h_d_f_a_r_r_a_y.html +++ b/develop/_h_d_f_a_r_r_a_y.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_h_d_f_array_8java.html b/develop/_h_d_f_array_8java.html index a84ec084e46..14d46891017 100644 --- a/develop/_h_d_f_array_8java.html +++ b/develop/_h_d_f_array_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h_d_f_n_a_t_i_v_e.html b/develop/_h_d_f_n_a_t_i_v_e.html index a6db6605efe..204d83df689 100644 --- a/develop/_h_d_f_n_a_t_i_v_e.html +++ b/develop/_h_d_f_n_a_t_i_v_e.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h_d_f_native_data_8java.html b/develop/_h_d_f_native_data_8java.html index 62ab638071c..0a46dbe8bc0 100644 --- a/develop/_h_d_f_native_data_8java.html +++ b/develop/_h_d_f_native_data_8java.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_h_t_m_l__i_m_g_s.html b/develop/_h_t_m_l__i_m_g_s.html index 4b0a2bb74c4..52a6abc54d5 100644 --- a/develop/_h_t_m_l__i_m_g_s.html +++ b/develop/_h_t_m_l__i_m_g_s.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
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    API Reference
    diff --git a/develop/_i_m_g.html b/develop/_i_m_g.html index e913c0ef74c..880c22cef73 100644 --- a/develop/_i_m_g.html +++ b/develop/_i_m_g.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    diff --git a/develop/_i_o_f_l_o_w.html b/develop/_i_o_f_l_o_w.html index df16e6b0a23..c1db550a969 100644 --- a/develop/_i_o_f_l_o_w.html +++ b/develop/_i_o_f_l_o_w.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -122,7 +122,6 @@ $(document).ready(function(){initNavTree('_i_o_f_l_o_w.html',''); initResizable(
    - HDF5 Raw I/O Flow Notes diff --git a/develop/_intro_h_d_f5.html b/develop/_intro_h_d_f5.html index e76228076ac..4b5a2928d12 100644 --- a/develop/_intro_h_d_f5.html +++ b/develop/_intro_h_d_f5.html @@ -37,7 +37,7 @@ Logo -
    HDF5 1.15.0 +
    HDF5 1.15.0.bca2806
    API Reference
    @@ -297,8 +297,7 @@ C routines begin with the prefix “H5*” where * is a single letter indicating
  • FORTRAN routines are similar; they begin with “h5*” and end with “_f”.
  • -Java routines are similar; the routine names begin with “H5*” and are prefixed with “H5.” as the class. Constants are in the HDF5Constants class and are prefixed with "HDF5Constants.". The function arguments are usually similar,
    See also
    HDF5 Java API Package
    -
  • +Java routines are similar; the routine names begin with “H5*” and are prefixed with “H5.” as the class. Constants are in the HDF5Constants class and are prefixed with "HDF5Constants.". The function arguments are usually similar, see HDF5 Java API Package For example:
    • diff --git a/develop/_intro_h_d_f5_8dox.html b/develop/_intro_h_d_f5_8dox.html index b5339245341..94e93408e43 100644 --- a/develop/_intro_h_d_f5_8dox.html +++ b/develop/_intro_h_d_f5_8dox.html @@ -37,7 +37,7 @@ Logo -
      HDF5 1.15.0 +
      HDF5 1.15.0.bca2806
      API Reference
      diff --git a/develop/_intro_par_chunk.html b/develop/_intro_par_chunk.html index 54cf2d53350..713174254f3 100644 --- a/develop/_intro_par_chunk.html +++ b/develop/_intro_par_chunk.html @@ -37,7 +37,7 @@ Logo -
      HDF5 1.15.0 +
      HDF5 1.15.0.bca2806
      API Reference
      diff --git a/develop/_intro_par_cont_hyperslab.html b/develop/_intro_par_cont_hyperslab.html index 59613b1a0bb..566c5fec818 100644 --- a/develop/_intro_par_cont_hyperslab.html +++ b/develop/_intro_par_cont_hyperslab.html @@ -37,7 +37,7 @@ Logo -
      HDF5 1.15.0 +
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      API Reference
      diff --git a/develop/_intro_par_examples_8dox.html b/develop/_intro_par_examples_8dox.html index 49e001814ec..780e640d157 100644 --- a/develop/_intro_par_examples_8dox.html +++ b/develop/_intro_par_examples_8dox.html @@ -37,7 +37,7 @@ Logo -
      HDF5 1.15.0 +
      HDF5 1.15.0.bca2806
      API Reference
      diff --git a/develop/_intro_par_h_d_f5.html b/develop/_intro_par_h_d_f5.html index d39da18736b..aea4bbc7f6a 100644 --- a/develop/_intro_par_h_d_f5.html +++ b/develop/_intro_par_h_d_f5.html @@ -37,7 +37,7 @@ Logo -
      HDF5 1.15.0 +
      HDF5 1.15.0.bca2806
      API Reference
      @@ -147,7 +147,7 @@ Overview of Parallel HDF5 (PHDF5) Design

      Parallel Programming with HDF5

      This tutorial assumes that you are somewhat familiar with parallel programming with MPI (Message Passing Interface).

      -

      If you are not familiar with parallel programming, here is a tutorial that may be of interest: Tutorial on HDF5 I/O tuning at NERSC. (NOTE: As of 2024, the specific systems described in this tutorial are outdated.)

      +

      If you are not familiar with parallel programming, here is a tutorial that may be of interest: Tutorial on HDF5 I/O tuning at NERSC. (NOTE: As of 2024, the specific systems described in this tutorial are outdated.)

      Some of the terms that you must understand in this tutorial are:

      • MPI Communicator Allows a group of processes to communicate with each other.

        diff --git a/develop/_intro_par_h_d_f5_8dox.html b/develop/_intro_par_h_d_f5_8dox.html index 68d50412031..38f5117df94 100644 --- a/develop/_intro_par_h_d_f5_8dox.html +++ b/develop/_intro_par_h_d_f5_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_intro_par_pattern.html b/develop/_intro_par_pattern.html index df8a7dc7fb4..87d1335e946 100644 --- a/develop/_intro_par_pattern.html +++ b/develop/_intro_par_pattern.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_intro_par_regular_spaced.html b/develop/_intro_par_regular_spaced.html index 4d2cb9ba3c5..4aeed23f2c4 100644 --- a/develop/_intro_par_regular_spaced.html +++ b/develop/_intro_par_regular_spaced.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_l_b_a_p_i.html b/develop/_l_b_a_p_i.html index c3c111220b9..510deb319d5 100644 --- a/develop/_l_b_a_p_i.html +++ b/develop/_l_b_a_p_i.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_l_b_attr_create.html b/develop/_l_b_attr_create.html index b5909b39dac..8d417a8b29a 100644 --- a/develop/_l_b_attr_create.html +++ b/develop/_l_b_attr_create.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_l_b_com_dset.html b/develop/_l_b_com_dset.html index cf904edf25d..823b638916f 100644 --- a/develop/_l_b_com_dset.html +++ b/develop/_l_b_com_dset.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -124,14 +124,14 @@ $(document).ready(function(){initNavTree('_l_b_com_dset.html',''); initResizable

        Navigate back: Main / Getting Started with HDF5 / Learning the Basics


        Creating a Compressed Dataset

        -

        HDF5 requires you to use chunking to create a compressed dataset. (To use chunking efficiently, be sure to see the advanced topic, Chunking in HDF5.)

        +

        HDF5 requires you to use chunking to create a compressed dataset. (To use chunking efficiently, be sure to see the advanced topic, Chunking in HDF5.)

        The following operations are required in order to create a compressed dataset:

        • Create a dataset creation property list.
        • Modify the dataset creation property list instance to enable chunking and to enable compression.
        • Create the dataset.
        • Close the dataset creation property list and dataset.
        -

        For more information on compression, see the FAQ question on Using Compression in HDF5.

        +

        For more information on compression, see the FAQ question on Using Compression in HDF5.

        Programming Example

        diff --git a/develop/_l_b_compiling.html b/develop/_l_b_compiling.html index ad62ee3134b..9d8a64e69d4 100644 --- a/develop/_l_b_compiling.html +++ b/develop/_l_b_compiling.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -503,11 +503,11 @@ HDF5 Libraries

        Compiling an Application with CMake

        CMake Scripts for Building Applications

        -

        Simple scripts are provided for building applications with different languages and options. See CMake Scripts for Building Applications.

        +

        Simple scripts are provided for building applications with different languages and options. See CMake Scripts for Building Applications.

        For a more complete script (and to help resolve issues) see the script provided with the HDF5 Examples project.

        HDF5 Examples

        -

        The installed HDF5 can be verified by compiling the HDF5 Examples project, included with the CMake built HDF5 binaries in the share folder or you can go to the HDF5 Examples github repository.

        +

        The installed HDF5 can be verified by compiling the HDF5 Examples project, included with the CMake built HDF5 binaries in the share folder or you can go to the HDF5 Examples in the HDF5 github repository.

        Go into the share directory and follow the instructions in USING_CMake_examples.txt to build the examples.

        In general, users must first set the HDF5_ROOT environment variable to the installed location of the CMake configuration files for HDF5. For example, on Windows the following path might be set:

        HDF5_ROOT=C:/Program Files/HDF_Group/HDF5/1.N.N
        diff --git a/develop/_l_b_contents.html b/develop/_l_b_contents.html index 5d9bf203cdf..ede9063a91e 100644 --- a/develop/_l_b_contents.html +++ b/develop/_l_b_contents.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_l_b_datatypes.html b/develop/_l_b_datatypes.html index d289f1286c7..07f4901f272 100644 --- a/develop/_l_b_datatypes.html +++ b/develop/_l_b_datatypes.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_l_b_dset_create.html b/develop/_l_b_dset_create.html index dadd8b10c65..c31782b2035 100644 --- a/develop/_l_b_dset_create.html +++ b/develop/_l_b_dset_create.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_l_b_dset_layout.html b/develop/_l_b_dset_layout.html index 1becdfe848e..5bfeff40cbe 100644 --- a/develop/_l_b_dset_layout.html +++ b/develop/_l_b_dset_layout.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -210,7 +210,7 @@ Changing the Layout after Dataset Creation

        The dataset layout is a Dataset Creation Property List. This means that once the dataset has been created the dataset layout cannot be changed. The h5repack utility can be used to write a file to a new with a new layout.

        Sources of Information

        -

        Chunking in HDF5 (See the documentation on Advanced Topics in HDF5)

        See also
        Properties and Property Lists in HDF5 in the HDF5 HDF5 User Guide.
        +

        Chunking in HDF5 (See the documentation on Advanced Topics in HDF5) see Properties and Property Lists in HDF5 in the HDF5 HDF5 User Guide.


        Previous Chapter Property Lists Basics - Next Chapter Extendible Datasets

        Navigate back: Main / Getting Started with HDF5 / Learning the Basics

        diff --git a/develop/_l_b_dset_r_w.html b/develop/_l_b_dset_r_w.html index 8e36abbf9a2..0caee87321b 100644 --- a/develop/_l_b_dset_r_w.html +++ b/develop/_l_b_dset_r_w.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_l_b_dset_sub_r_w.html b/develop/_l_b_dset_sub_r_w.html index f1227c4cf9c..6afdf9171ca 100644 --- a/develop/_l_b_dset_sub_r_w.html +++ b/develop/_l_b_dset_sub_r_w.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -236,7 +236,7 @@ Example 3
        -

        The selections above were tested with the h5_subsetbk.c example code. The memory dataspace was defined as one-dimensional.

        +

        The selections above were tested with the h5_subsetbk.c example code. The memory dataspace was defined as one-dimensional.

        Remarks

          diff --git a/develop/_l_b_examples.html b/develop/_l_b_examples.html index d9d86a1a3ac..3367ec883d9 100644 --- a/develop/_l_b_examples.html +++ b/develop/_l_b_examples.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          @@ -131,7 +131,7 @@ HDF5 Source Code Examples Feature Examples Comments -Create a file C Fortran C++ Java Python +Create a file C Fortran C++ Java Python Create a dataset C Fortran C++ Java Python @@ -139,17 +139,17 @@ HDF5 Source Code Examples Create an attribute C Fortran C++ Java Python -Create a group C Fortran C++ Java Python +Create a group C Fortran C++ Java Python Create groups in a file using absolute and relative paths C Fortran C++ Java Python -Create datasets in a group C Fortran C++ Java Python +Create datasets in a group C Fortran C++ Java Python Create a file and dataset and select/read a subset from the dataset C Fortran C++ Java Python Also see examples to Write by row (and column) below. Create an extendible (unlimited dimension) dataset C Fortran C++ Java Python Also see examples to Extend by row (and column) below -Create a chunked and compressed dataset C Fortran C++ Java Python +Create a chunked and compressed dataset C Fortran C++ Java Python

          See HDF5Mathematica for user-contributed HDF5 Mathematica Wrappers and Introductory Tutorial Examples. The examples use P/Invoke.

          diff --git a/develop/_l_b_ext_dset.html b/develop/_l_b_ext_dset.html index b7a9389208d..ecf478a4ff2 100644 --- a/develop/_l_b_ext_dset.html +++ b/develop/_l_b_ext_dset.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          @@ -125,7 +125,7 @@ $(document).ready(function(){initNavTree('_l_b_ext_dset.html',''); initResizable

          Creating an Extendible Dataset

          An extendible dataset is one whose dimensions can grow. HDF5 allows you to define a dataset to have certain initial dimensions, then to later increase the size of any of the initial dimensions.

          -

          HDF5 requires you to use chunking to define extendible datasets. This makes it possible to extend datasets efficiently without having to excessively reorganize storage. (To use chunking efficiently, be sure to see the advanced topic, Chunking in HDF5.)

          +

          HDF5 requires you to use chunking to define extendible datasets. This makes it possible to extend datasets efficiently without having to excessively reorganize storage. (To use chunking efficiently, be sure to see the advanced topic, Chunking in HDF5.)

          The following operations are required in order to extend a dataset:

          • Declare the dataspace of the dataset to have unlimited dimensions for all dimensions that might eventually be extended.
          • Set dataset creation properties to enable chunking.
          • diff --git a/develop/_l_b_file_create.html b/develop/_l_b_file_create.html index 6167386f8a2..8f53b524a41 100644 --- a/develop/_l_b_file_create.html +++ b/develop/_l_b_file_create.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            diff --git a/develop/_l_b_file_org.html b/develop/_l_b_file_org.html index 06f8d6601eb..fcd2b89b485 100644 --- a/develop/_l_b_file_org.html +++ b/develop/_l_b_file_org.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            diff --git a/develop/_l_b_grp_create.html b/develop/_l_b_grp_create.html index 2aafb5e00fa..4cb38ded7b7 100644 --- a/develop/_l_b_grp_create.html +++ b/develop/_l_b_grp_create.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            diff --git a/develop/_l_b_grp_create_names.html b/develop/_l_b_grp_create_names.html index bb18a3a2aff..3c3bd675c81 100644 --- a/develop/_l_b_grp_create_names.html +++ b/develop/_l_b_grp_create_names.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            diff --git a/develop/_l_b_grp_dset.html b/develop/_l_b_grp_dset.html index b749b6c0f4e..420b67bdba5 100644 --- a/develop/_l_b_grp_dset.html +++ b/develop/_l_b_grp_dset.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            diff --git a/develop/_l_b_prog.html b/develop/_l_b_prog.html index 81038946211..89af852896d 100644 --- a/develop/_l_b_prog.html +++ b/develop/_l_b_prog.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            diff --git a/develop/_l_b_props_list.html b/develop/_l_b_props_list.html index 81a7d56a961..aa5ffdf6f29 100644 --- a/develop/_l_b_props_list.html +++ b/develop/_l_b_props_list.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            diff --git a/develop/_l_b_quiz.html b/develop/_l_b_quiz.html index 0f0d1a982b3..4cd9c1e24e3 100644 --- a/develop/_l_b_quiz.html +++ b/develop/_l_b_quiz.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            diff --git a/develop/_l_b_quiz_answers.html b/develop/_l_b_quiz_answers.html index 259721d5042..4283f651e1e 100644 --- a/develop/_l_b_quiz_answers.html +++ b/develop/_l_b_quiz_answers.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            @@ -285,8 +285,7 @@ Describe a way to access the dataset moo described in the previous section (ques

            Previous Chapter Learning the basics QUIZ - Next Chapter Compiling HDF5 Applications

            -

            Navigate back: Main / Getting Started with HDF5 / Learning the Basics

            -

            /**

            +

            Navigate back: Main / Getting Started with HDF5 / Learning the Basics

            diff --git a/develop/_l_b_training.html b/develop/_l_b_training.html index 7f76d29bf44..f38427aa563 100644 --- a/develop/_l_b_training.html +++ b/develop/_l_b_training.html @@ -37,7 +37,7 @@ Logo -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            @@ -121,7 +121,11 @@ $(document).ready(function(){initNavTree('_l_b_training.html',''); initResizable
            Training Videos
            -

            Navigate back: Main / Getting Started with HDF5 / Learning the Basics


            +

            Navigate back: Main / Getting Started with HDF5 / Learning the Basics

            +

            Training Videos

            +
            +

            Navigate back: Main / Getting Started with HDF5 / Learning the Basics

            +

            Navigate back: Main / Getting Started with HDF5 / Learning the Basics



            diff --git a/develop/_learn_basics.html b/develop/_learn_basics.html index cef7eaa26d9..fa483310008 100644 --- a/develop/_learn_basics.html +++ b/develop/_learn_basics.html @@ -37,7 +37,7 @@ diff --git a/develop/_learn_basics1_8dox.html b/develop/_learn_basics1_8dox.html index 4b489574105..a210fe3aae8 100644 --- a/develop/_learn_basics1_8dox.html +++ b/develop/_learn_basics1_8dox.html @@ -37,7 +37,7 @@ diff --git a/develop/_learn_basics2_8dox.html b/develop/_learn_basics2_8dox.html index eb6731bd11c..1931446c52f 100644 --- a/develop/_learn_basics2_8dox.html +++ b/develop/_learn_basics2_8dox.html @@ -37,7 +37,7 @@ diff --git a/develop/_learn_basics3_8dox.html b/develop/_learn_basics3_8dox.html index b5830070796..19a7721988b 100644 --- a/develop/_learn_basics3_8dox.html +++ b/develop/_learn_basics3_8dox.html @@ -37,7 +37,7 @@ diff --git a/develop/_learn_basics_8dox.html b/develop/_learn_basics_8dox.html index c2b88054ae2..45156e5184d 100644 --- a/develop/_learn_basics_8dox.html +++ b/develop/_learn_basics_8dox.html @@ -37,7 +37,7 @@ diff --git a/develop/_learn_h_d_f_view.html b/develop/_learn_h_d_f_view.html index db989d8c7fb..b7e59831540 100644 --- a/develop/_learn_h_d_f_view.html +++ b/develop/_learn_h_d_f_view.html @@ -37,7 +37,7 @@ @@ -126,8 +126,8 @@ $(document).ready(function(){initNavTree('_learn_h_d_f_view.html',''); initResiz

            HDFView Installation

              -
            • Download and install HDFView. It can be downloaded from the Download HDFView page.
            • -
            • Obtain the storm1.txt text file, used in the tutorial.
            • +
            • Download and install HDFView. It can be downloaded from the Download HDFView page.
            • +
            • Obtain the storm1.txt text file, used in the tutorial.

            Begin Tutorial

            @@ -219,8 +219,8 @@ Click to expand the Data group in the tree view to see the Storm Double left click on the Storm dataset in the tree view. A window with an empty spreadsheet pops open.
          • -

            Copy the data from the storm1.txt file into the dataset.

            -

            If you downloaded storm1.txt, then click on the Import/Export Data menu and select Import Data from -> Text File. Specify a location, select storm1.txt and click on the Open button. Answer Yes in the dialog box that pops up (which asks if you wish to paste the selected data).

            +

            Copy the data from the storm1.txt file into the dataset.

            +

            If you downloaded storm1.txt, then click on the Import/Export Data menu and select Import Data from -> Text File. Specify a location, select storm1.txt and click on the Open button. Answer Yes in the dialog box that pops up (which asks if you wish to paste the selected data).

            Alternately, you can copy/paste directly. Select and copy the data in a separate window. Position your cursor at (0,0) in your table, and select Paste from the Table menu.

            The values will be entered into the spreadsheet.

          • -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            -
            HDF5 1.15.0 +
            HDF5 1.15.0.bca2806
            API Reference
            @@ -316,7 +316,7 @@ Click in the first cell and enter m/s followed by the enter key.

            Creating a Compressed and Chunked Dataset

            A chunked and compressed dataset can be created using HDFView. A compressed dataset is a dataset whose size has been compressed to take up less space. In order to compress an HDF5 dataset, the dataset must be stored with a chunked dataset layout (as multiple chunks that are stored separately in the file).

            -

            Please note that the chunk sizes used in this topic are for demonstration purposes only. For information on chunking and specifying an appropriate chunk size, see the Chunking in HDF5 documentation.

            +

            Please note that the chunk sizes used in this topic are for demonstration purposes only. For information on chunking and specifying an appropriate chunk size, see the Chunking in HDF5 documentation.

            Also see the HDF5 Tutorial topic on Creating a Compressed Dataset.

            • Right click on storm.h5. Select New -> Group.
            • @@ -364,7 +364,7 @@ Double left-mouse click on the Another Storm dataset to display the spr
          • -Copy the data from the storm1.txt file into the dataset. (See the previous topic for copying storm1.txt into a dataset.)
          • +Copy the data from the storm1.txt file into the dataset. (See the previous topic for copying storm1.txt into a dataset.)
          • Table -> Close, and save the data.
          • @@ -413,7 +413,7 @@ Right click on Storm Image, and select Open As to open the Dat
          • Click on the Spreadsheet button at the top left of the Dataset Selection window to view the image as a spreadsheet.
          • -Copy the data from the storm1.txt file into the dataset.
          • +Copy the data from the storm1.txt file into the dataset.
          • Close the dataset and save the data.
          diff --git a/develop/_learn_h_d_f_view_8dox.html b/develop/_learn_h_d_f_view_8dox.html index 3a26c31fa84..e6d2d3b5a1c 100644 --- a/develop/_learn_h_d_f_view_8dox.html +++ b/develop/_learn_h_d_f_view_8dox.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
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          HDF5 Thread Safe library
          -
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          -
          - - - Thread Safe Library - - -

          1. Library header files and conditional compilation

          - -

          -The following code is placed at the beginning of H5private.h: -

          - -
          -
          -  #ifdef H5_HAVE_THREADSAFE
          -  #include <pthread.h>
          -  #endif
          -  
          -
          - -

          -H5_HAVE_THREADSAFE is defined when the HDF5 library is -compiled with the --enable-threadsafe configuration option. In general, -code for the non-threadsafe version of HDF5 library are placed within -the #else part of the conditional compilation. The exception -to this rule are the changes to the FUNC_ENTER (in -H5private.h), HRETURN and HRETURN_ERROR (in -H5Eprivate.h) macros (see section 3.2). -

          - - -

          2. Global variables/structures

          - -

          2.1 Global library initialization variable

          - -

          -In the threadsafe implementation, the global library initialization -variable H5_libinit_g is changed to a global structure -consisting of the variable with its associated lock (locks are explained -in section 4.1): -

          - -
          -
          -    hbool_t  H5_libinit_g = FALSE;
          -  
          -
          - -

          -becomes -

          - -
          -
          -    H5_api_t H5_g;
          -  
          -
          - -

          -where H5_api_t is -

          - -
          -
          -    typedef struct H5_api_struct {
          -      H5_mutex_t init_lock;           /* API entrance mutex */
          -      hbool_t H5_libinit_g;
          -    } H5_api_t;
          -  
          -
          - -

          -All former references to H5_libinit_g in the library are now -made using the macro H5_INIT_GLOBAL. If the threadsafe -library is to be used, the macro is set to H5_g.H5_libinit_g -instead. -

          - -

          2.2 Global serialization variable

          - -

          -A new global boolean variable H5_allow_concurrent_g is used -to determine if multiple threads are allowed to an API call -simultaneously. This is set to FALSE. -

          - -

          -All APIs that are allowed to do so have their own local variable that -shadows the global variable and is set to TRUE. In phase 1, -no such APIs exist. -

          - -

          -It is defined in H5.c as follows: -

          - -
          -
          -    hbool_t H5_allow_concurrent_g = FALSE;
          -  
          -
          - -

          2.3 Global thread initialization variable

          - -

          -The global variable H5_first_init_g of type -pthread_once_t is used to allow only the first thread in the -application process to call an initialization function using -pthread_once. All subsequent calls to -pthread_once by any thread are disregarded. -

          - -

          -The call sets up the mutex in the global structure H5_g (see -section 3.1) via an initialization function -H5_first_thread_init. The first thread initialization -function is described in section 4.2. -

          - -

          -H5_first_init_g is defined in H5.c as follows: -

          - -
          -
          -    pthread_once_t H5_first_init_g = PTHREAD_ONCE_INIT;
          -  
          -
          - -

          2.4 Global key for per-thread error stacks

          - -

          -A global pthread-managed key H5_errstk_key_g is used to -allow pthreads to maintain a separate error stack (of type -H5E_t) for each thread. This is defined in H5.c -as: -

          - -
          -
          -    pthread_key_t H5_errstk_key_g;
          -  
          -
          - -

          -Error stack management is described in section 4.3. -

          - -

          2.5 Global structure and key for thread cancellation prevention

          - -

          -We need to preserve the thread cancellation status of each thread -individually by using a key H5_cancel_key_g. The status is -preserved using a structure (of type H5_cancel_t) which -maintains the cancellability state of the thread before it entered the -library and a count (which works very much like the recursive lock -counter) which keeps track of the number of API calls the thread makes -within the library. -

          - -

          -The structure is defined in H5private.h as: -

          - -
          -
          -    /* cancellability structure */
          -    typedef struct H5_cancel_struct {
          -      int previous_state;
          -      unsigned int cancel_count;
          -    } H5_cancel_t;
          -  
          -
          - -

          -Thread cancellation is described in section 4.4. -

          - - -

          3. Changes to Macro expansions

          - -

          3.1 Changes to FUNC_ENTER

          - -

          -The FUNC_ENTER macro is now extended to include macro calls -to initialize first threads, disable cancellability and wraps a lock -operation around the checking of the global initialization flag. It -should be noted that the cancellability should be disabled before -acquiring the lock on the library. Doing so otherwise would allow the -possibility that the thread be cancelled just after it has acquired the -lock on the library and in that scenario, if the cleanup routines are not -properly set, the library would be permanently locked out. -

          - -

          -The additional macro code and new macro definitions can be found in -Appendix E.1 to E.5. The changes are made in H5private.h. -

          - -

          3.2 Changes to HRETURN and HRETURN_ERROR

          - -

          -The HRETURN and HRETURN_ERROR macros are the -counterparts to the FUNC_ENTER macro described in section -3.1. FUNC_LEAVE makes a macro call to HRETURN, -so it is also covered here. -

          - -

          -The basic changes to these two macros involve adding macro calls to call -an unlock operation and re-enable cancellability if necessary. It should -be noted that the cancellability should be re-enabled only after the -thread has released the lock to the library. The consequence of doing -otherwise would be similar to that described in section 3.1. -

          - -

          -The additional macro code and new macro definitions can be found in -Appendix E.9 to E.9. The changes are made in H5Eprivate.h. -

          - -

          4. Implementation of threadsafe functionality

          - -

          4.1 Recursive Locks

          - -

          -A recursive mutex lock m allows a thread t1 to successfully lock m more -than once without blocking t1. Another thread t2 will block if t2 tries -to lock m while t1 holds the lock to m. If t1 makes k lock calls on m, -then it also needs to make k unlock calls on m before it releases the -lock. -

          - -

          -Our implementation of recursive locks is built on top of a pthread mutex -lock (which is not recursive). It makes use of a pthread condition -variable to have unsuccessful threads wait on the mutex. Waiting threads -are awaken by a signal from the final unlock call made by the thread -holding the lock. -

          - -

          -Recursive locks are defined to be the following type -(H5private.h): -

          - -
          -
          -    typedef struct H5_mutex_struct {
          -      pthread_t owner_thread;         /* current lock owner */
          -      pthread_mutex_t atomic_lock;    /* lock for atomicity of new mechanism */
          -      pthread_cond_t cond_var;        /* condition variable */
          -      unsigned int lock_count;
          -    } H5_mutex_t;
          -  
          -
          - -

          -Detailed implementation code can be found in Appendix A. The -implementation changes are made in H5TS.c. -

          - -

          4.2 First thread initialization

          - -

          -Because the mutex lock associated with a recursive lock cannot be -statically initialized, a mechanism is required to initialize the -recursive lock associated with H5_g so that it can be used -for the first time. -

          - -

          -The pthreads library allows this through the pthread_once call which as -described in section 3.3 allows only the first thread accessing the -library in an application to initialize H5_g. -

          - -

          -In addition to initializing H5_g, it also initializes the -key (see section 3.4) for use with per-thread error stacks (see section -4.3). -

          - -

          -The first thread initialization mechanism is implemented as the function -call H5_first_thread_init() in H5TS.c. This is -described in appendix B. -

          - -

          4.3 Per-thread error stack management

          - -

          -Pthreads allows individual threads to access dynamic and persistent -per-thread data through the use of keys. Each key is associated with -a table that maps threads to data items. Keys can be initialized by -pthread_key_create() in pthreads (see sections 3.4 and 4.2). -Per-thread data items are accessed using a key through the -pthread_getspecific() and pthread_setspecific() -calls to read and write to the association table respectively. -

          - -

          -Per-thread error stacks are accessed through the key -H5_errstk_key_g which is initialized by the first thread -initialization call (see section 4.2). -

          - -

          -In the non-threadsafe version of the library, there is a global stack -variable H5E_stack_g[1] which is no longer defined in the -threadsafe version. At the same time, the macro call to gain access to -the error stack H5E_get_my_stack is changed from: -

          - -
          -
          -    #define H5E_get_my_stack() (H5E_stack_g+0)
          -  
          -
          - -

          -to: -

          - -
          -
          -    #define H5E_get_my_stack() H5E_get_stack()
          -  
          -
          - -

          -where H5E_get_stack() is a surrogate function that does the -following operations: -

          - -
            -
          1. if a thread is attempting to get an error stack for the first - time, the error stack is dynamically allocated for the thread and - associated with H5_errstk_key_g using - pthread_setspecific(). The way we detect if it is the - first time is through pthread_getspecific() which - returns NULL if no previous value is associated with - the thread using the key.
          2. - -
          3. if pthread_getspecific() returns a non-null value, - then that is the pointer to the error stack associated with the - thread and the stack can be used as usual.
          4. -
          - -

          -A final change to the error reporting routines is as follows; the current -implementation reports errors to always be detected at thread 0. In the -threadsafe implementation, this is changed to report the number returned -by a call to pthread_self(). -

          - -

          -The change in code (reflected in H5Eprint of file -H5E.c) is as follows: -

          - -
          -
          -    #ifdef H5_HAVE_THREADSAFE
          -      fprintf (stream, "HDF5-DIAG: Error detected in thread %d."
          -               ,pthread_self());
          -    #else
          -      fprintf (stream, "HDF5-DIAG: Error detected in thread 0.");
          -    #endif
          -  
          -
          - -

          -Code for H5E_get_stack() can be found in Appendix C. All the -above changes were made in H5E.c. -

          - -

          4.4 Thread Cancellation safety

          - -

          -To prevent thread cancellations from killing a thread while it is in the -library, we maintain per-thread information about the cancellability -status of the thread before it entered the library so that we can restore -that same status when the thread leaves the library. -

          - -

          -By enter and leave the library, we mean the points when a -thread makes an API call from a user application and the time that API -call returns. Other API or callback function calls made from within that -API call are considered within the library. -

          - -

          -Because other API calls may be made from within the first API call, we -need to maintain a counter to determine which was the first and -correspondingly the last return. -

          - -

          -When a thread makes an API call, the macro H5_API_SET_CANCEL -calls the worker function H5_cancel_count_inc() which does -the following: -

          - -
            -
          1. if this is the first time the thread has entered the library, - a new cancellability structure needs to be assigned to it.
          2. -
          3. if the thread is already within the library when the API call is - made, then cancel_count is simply incremented. Otherwise, we set - the cancellability state to PTHREAD_CANCEL_DISABLE - while storing the previous state into the cancellability structure. - cancel_count is also incremented in this case.
          4. -
          - -

          -When a thread leaves an API call, the macro -H5_API_UNSET_CANCEL calls the worker function -H5_cancel_count_dec() which does the following: -

          - -
            -
          1. if cancel_count is greater than 1, indicating that the - thread is not yet about to leave the library, then - cancel_count is simply decremented.
          2. -
          3. otherwise, we reset the cancellability state back to its original - state before it entered the library and decrement the count (back - to zero).
          4. -
          - -

          -H5_cancel_count_inc and H5_cancel_count_dec are -described in Appendix D and may be found in H5TS.c. -

          - -

          5. Test programs

          - -

          -Except where stated, all tests involve 16 simultaneous threads that make -use of HDF5 API calls without any explicit synchronization typically -required in a non-threadsafe environment. -

          - -

          5.1 Data set create and write

          - -

          -The test program sets up 16 threads to simultaneously create 16 -different datasets named from zero to fifteen for a single -file and then writing an integer value into that dataset equal to the -dataset's named value. -

          - -

          -The main thread would join with all 16 threads and attempt to match the -resulting HDF5 file with expected results - that each dataset contains -the correct value (0 for zero, 1 for one etc ...) and all -datasets were correctly created. -

          - -

          -The test is implemented in the file ttsafe_dcreate.c. -

          - -

          5.2 Test on error stack

          - -

          -The error stack test is one in which 16 threads simultaneously try to -create datasets with the same name. The result, when properly serialized, -should be equivalent to 16 attempts to create the dataset with the same -name. -

          - -

          -The error stack implementation runs correctly if it reports 15 instances -of the dataset name conflict error and finally generates a correct HDF5 -containing that single dataset. Each thread should report its own stack -of errors with a thread number associated with it. -

          - -

          -The test is implemented in the file ttsafe_error.c. -

          - -

          5.3 Test on cancellation safety

          - -

          -The main idea in thread cancellation safety is as follows; a child thread -is spawned to create and write to a dataset. Following that, it makes a -H5Diterate call on that dataset which activates a callback -function. -

          - -

          -A deliberate barrier is invoked at the callback function which waits for -both the main and child thread to arrive at that point. After that -happens, the main thread proceeds to make a thread cancel call on the -child thread while the latter sleeps for 3 seconds before proceeding to -write a new value to the dataset. -

          - -

          -After the iterate call, the child thread logically proceeds to wait -another 3 seconds before writing another newer value to the dataset. -

          - -

          -The test is correct if the main thread manages to read the second value -at the end of the test. This means that cancellation did not take place -until the end of the iteration call despite of the 3 second wait within -the iteration callback and the extra dataset write operation. -Furthermore, the cancellation should occur before the child can proceed -to write the last value into the dataset. -

          - -

          5.4 Test on attribute creation

          - -

          -A main thread makes 16 threaded calls to H5Acreate with a -generated name for each attribute. Sixteen attributes should be created -for the single dataset in random (chronological) order and receive values -depending on its generated attribute name (e.g. attrib010 would -receive the value 10). -

          - -

          -After joining with all child threads, the main thread proceeds to read -each attribute by generated name to see if the value tallies. Failure is -detected if the attribute name does not exist (meaning they were never -created) or if the wrong values were read back. -

          - -

          A. Recursive Lock implementation code

          - -
          -
          -  void H5_mutex_init(H5_mutex_t *H5_mutex)
          -  {
          -    H5_mutex->owner_thread = NULL;
          -    pthread_mutex_init(&H5_mutex->atomic_lock, NULL);
          -    pthread_cond_init(&H5_mutex->cond_var, NULL);
          -    H5_mutex->lock_count = 0;
          -  }
          -
          -  void H5_mutex_lock(H5_mutex_t *H5_mutex)
          -  {
          -    pthread_mutex_lock(&H5_mutex->atomic_lock);
          -
          -    if (pthread_equal(pthread_self(), H5_mutex->owner_thread)) {
          -    	/* already owned by self - increment count */
          -    	H5_mutex->lock_count++;
          -    } else {
          -    	if (H5_mutex->owner_thread == NULL) {
          -    		/* no one else has locked it - set owner and grab lock */
          -    		H5_mutex->owner_thread = pthread_self();
          -    		H5_mutex->lock_count = 1;
          -    	} else {
          -    		/* if already locked by someone else */
          -    		while (1) {
          -    			pthread_cond_wait(&H5_mutex->cond_var, &H5_mutex->atomic_lock);
          -
          -    			if (H5_mutex->owner_thread == NULL) {
          -    				H5_mutex->owner_thread = pthread_self();
          -    				H5_mutex->lock_count = 1;
          -    				break;
          -    			} /* else do nothing and loop back to wait on condition*/
          -    		}
          -    	}
          -    }
          -
          -    pthread_mutex_unlock(&H5_mutex->atomic_lock);
          -  }
          -
          -  void H5_mutex_unlock(H5_mutex_t *H5_mutex)
          -  {
          -    pthread_mutex_lock(&H5_mutex->atomic_lock);
          -    H5_mutex->lock_count--;
          -
          -    if (H5_mutex->lock_count == 0) {
          -    	H5_mutex->owner_thread = NULL;
          -    	pthread_cond_signal(&H5_mutex->cond_var);
          -    }
          -    pthread_mutex_unlock(&H5_mutex->atomic_lock);
          -  }
          -  
          -
          - -

          B. First thread initialization

          - -
          -
          -  void H5_first_thread_init(void)
          -  {
          -    /* initialize global API mutex lock                      */
          -    H5_g.H5_libinit_g = FALSE;
          -    H5_g.init_lock.owner_thread = NULL;
          -    pthread_mutex_init(&H5_g.init_lock.atomic_lock, NULL);
          -    pthread_cond_init(&H5_g.init_lock.cond_var, NULL);
          -    H5_g.init_lock.lock_count = 0;
          -
          -    /* initialize key for thread-specific error stacks       */
          -    pthread_key_create(&H5_errstk_key_g, NULL);
          -
          -    /* initialize key for thread cancellability mechanism    */
          -    pthread_key_create(&H5_cancel_key_g, NULL);
          -  }
          -  
          -
          - - -

          C. Per-thread error stack acquisition

          - -
          -
          -  H5E_t *H5E_get_stack(void)
          -  {
          -    H5E_t *estack;
          -
          -    if (estack = pthread_getspecific(H5_errstk_key_g)) {
          -    	return estack;
          -    } else {
          -    	/* no associated value with current thread - create one */
          -    	estack = (H5E_t *)malloc(sizeof(H5E_t));
          -    	pthread_setspecific(H5_errstk_key_g, (void *)estack);
          -    	return estack;
          -    }
          -  }
          -  
          -
          - -

          D. Thread cancellation mechanisms

          - -
          -
          -  void H5_cancel_count_inc(void)
          -  {
          -    H5_cancel_t *cancel_counter;
          -
          -    if (cancel_counter = pthread_getspecific(H5_cancel_key_g)) {
          -      /* do nothing here */
          -    } else {
          -      /*
          -       * first time thread calls library - create new counter and
          -       * associate with key
          -       */
          -      cancel_counter = (H5_cancel_t *)malloc(sizeof(H5_cancel_t));
          -      cancel_counter->cancel_count = 0;
          -      pthread_setspecific(H5_cancel_key_g, (void *)cancel_counter);
          -    }
          -
          -    if (cancel_counter->cancel_count == 0) {
          -      /* thread entering library */
          -      pthread_setcancelstate(PTHREAD_CANCEL_DISABLE,
          -                             &(cancel_counter->previous_state));
          -    }
          -
          -    cancel_counter->cancel_count++;
          -  }
          -
          -  void H5_cancel_count_dec(void)
          -  {
          -    H5_cancel_t *cancel_counter = pthread_getspecific(H5_cancel_key_g);
          -
          -    if (cancel_counter->cancel_count == 1)
          -      pthread_setcancelstate(cancel_counter->previous_state, NULL);
          -
          -    cancel_counter->cancel_count--;
          -  }
          -  
          -
          - -

          E. Macro expansion codes

          - -

          E.1 FUNC_ENTER

          - -
          -
          -  /* Initialize the library */                                \
          -  H5_FIRST_THREAD_INIT                                        \
          -  H5_API_UNSET_CANCEL                                         \
          -  H5_API_LOCK_BEGIN                                           \
          -    if (!(H5_INIT_GLOBAL)) {                                  \
          -      H5_INIT_GLOBAL = TRUE;                                  \
          -        if (H5_init_library() < 0) {                          \
          -          HRETURN_ERROR (H5E_FUNC, H5E_CANTINIT, err,         \
          -                        "library initialization failed");     \
          -        }                                                     \
          -    }                                                         \
          -    H5_API_LOCK_END                                           \
          -             :
          -             :
          -             :
          -  
          -
          - -

          E.2 H5_FIRST_THREAD_INIT

          - -
          -
          -  /* Macro for first thread initialization */
          -  #define H5_FIRST_THREAD_INIT                                \
          -    pthread_once(&H5_first_init_g, H5_first_thread_init);
          -  
          -
          - - -

          E.3 H5_API_UNSET_CANCEL

          - -
          -
          -  #define H5_API_UNSET_CANCEL                                 \
          -    if (H5_IS_API(__func__)) {                                \
          -      H5_cancel_count_inc();                                  \
          -    }
          -  
          -
          - - -

          E.4 H5_API_LOCK_BEGIN

          - -
          -
          -  #define H5_API_LOCK_BEGIN                                   \
          -     if (H5_IS_API(__func__)) {                               \
          -       H5_mutex_lock(&H5_g.init_lock);
          -  
          -
          - - -

          E.5 H5_API_LOCK_END

          - -
          -
          -  #define H5_API_LOCK_END }
          -  
          -
          - - -

          E.6 HRETURN and HRETURN_ERROR

          - -
          -
          -            :
          -            :
          -    H5_API_UNLOCK_BEGIN                                       \
          -    H5_API_UNLOCK_END                                         \
          -    H5_API_SET_CANCEL                                         \
          -    return ret_val;                                           \
          -  }
          -  
          -
          - -

          E.7 H5_API_UNLOCK_BEGIN

          - -
          -
          -  #define H5_API_UNLOCK_BEGIN                                 \
          -    if (H5_IS_API(__func__)) {                                \
          -      H5_mutex_unlock(&H5_g.init_lock);
          -  
          -
          - -

          E.8 H5_API_UNLOCK_END

          - -
          -
          -  #define H5_API_UNLOCK_END }
          -  
          -
          - - -

          E.9 H5_API_SET_CANCEL

          - -
          -
          -  #define H5_API_SET_CANCEL                                   \
          -    if (H5_IS_API(__func__)) {                                \
          -      H5_cancel_count_dec();                                  \
          -    }
          -  
          -
          - -

          By Chee Wai Lee

          -

          By Bill Wendling

          - - - -
          -
          -
          - - - - diff --git a/develop/_metadata_caching_in_h_d_f5_8dox.html b/develop/_metadata_caching_in_h_d_f5_8dox.html index 3fd1fc7502d..02c3bf81577 100644 --- a/develop/_metadata_caching_in_h_d_f5_8dox.html +++ b/develop/_metadata_caching_in_h_d_f5_8dox.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          diff --git a/develop/_overview_8dox.html b/develop/_overview_8dox.html index 49878031a91..541d7a63929 100644 --- a/develop/_overview_8dox.html +++ b/develop/_overview_8dox.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          diff --git a/develop/_performance.html b/develop/_performance.html index 4052033d329..ae906620a95 100644 --- a/develop/_performance.html +++ b/develop/_performance.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          diff --git a/develop/_performance_8dox.html b/develop/_performance_8dox.html index 29305b783ec..cb4dcc24042 100644 --- a/develop/_performance_8dox.html +++ b/develop/_performance_8dox.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          diff --git a/develop/_predefined_datatype_tables_8dox.html b/develop/_predefined_datatype_tables_8dox.html index 17e3ec67b53..3a587e58131 100644 --- a/develop/_predefined_datatype_tables_8dox.html +++ b/develop/_predefined_datatype_tables_8dox.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          diff --git a/develop/_r_e_a_d_m_e_8md.html b/develop/_r_e_a_d_m_e_8md.html index dc67851963e..276c5c8e574 100644 --- a/develop/_r_e_a_d_m_e_8md.html +++ b/develop/_r_e_a_d_m_e_8md.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          diff --git a/develop/_r_e_l_e_a_s_e___p_r_o_c_e_s_s_8md.html b/develop/_r_e_l_e_a_s_e___p_r_o_c_e_s_s_8md.html index 9ca283380fa..704461709dc 100644 --- a/develop/_r_e_l_e_a_s_e___p_r_o_c_e_s_s_8md.html +++ b/develop/_r_e_l_e_a_s_e___p_r_o_c_e_s_s_8md.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          diff --git a/develop/_r_e_l_v_e_r_s_i_o_n.html b/develop/_r_e_l_v_e_r_s_i_o_n.html index 519a62c6783..0a3c06c81e1 100644 --- a/develop/_r_e_l_v_e_r_s_i_o_n.html +++ b/develop/_r_e_l_v_e_r_s_i_o_n.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          @@ -364,7 +364,7 @@ HDF5 Library. For more information, see the

          For more information on these and other function calls and macros, - see the HDF5 Reference Manual.

          + see the HDF5 Reference Manual.

          Use Cases

          diff --git a/develop/_r_f_c.html b/develop/_r_f_c.html index 6b0b88daf91..6a2b216e0d6 100644 --- a/develop/_r_f_c.html +++ b/develop/_r_f_c.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          @@ -125,199 +125,199 @@ $(document).ready(function(){initNavTree('_r_f_c.html',''); initResizable(); }); RFC IDTitle -2022-08-19 Terminal VOL Connector Feature Flags +2022-08-19 Terminal VOL Connector Feature Flags -2021-05-28 Multi-Thread HDF5 +2021-05-28 Multi-Thread HDF5 -2021-02-19 Selection I/O +2021-02-19 Selection I/O -2020-02-13 VFD Sub-filing +2020-02-13 VFD Sub-filing -2020-02-10 Onion VFD +2020-02-10 Onion VFD -2019-09-23 Virtual Object Layer (VOL) API Compatibility +2019-09-23 Virtual Object Layer (VOL) API Compatibility -2019-07-15 Variable-Length Data in HDF5 Sketch Design +2019-07-15 Variable-Length Data in HDF5 Sketch Design -2019-04-10 A Plugin Interface for HDF5 Virtual File Drivers +2019-04-10 A Plugin Interface for HDF5 Virtual File Drivers -2018-12-31 Dataset Object Header Size +2018-12-31 Dataset Object Header Size -2018-12-20 MS 3.2 – Addressing Scalability: Scalability of open, close, flush CASE STUDY: CGNS Hotspot analysis of CGNS cgp_open +2018-12-20 MS 3.2 – Addressing Scalability: Scalability of open, close, flush CASE STUDY: CGNS Hotspot analysis of CGNS cgp_open -2018-08-30 Sparse Chunks +2018-08-30 Sparse Chunks -2018-08-29 H5FD_MIRROR Virtual File Driver +2018-08-29 H5FD_MIRROR Virtual File Driver -2018-08-15 Splitter_VFD +2018-08-15 Splitter_VFD -2018-07-12 Update to HDF5 References +2018-07-12 Update to HDF5 References -2018-06-20 Chunk query functionality in HDF5 +2018-06-20 Chunk query functionality in HDF5 -2018-06-10 VFD SWMR +2018-06-10 VFD SWMR -2018-03-21 API Contexts +2018-03-21 API Contexts -2018-01-25 Enhancement to the tool h5clear +2018-01-25 Enhancement to the tool h5clear -2017-07-07 H5Sencode/H5Sdecode Format Change +2017-07-07 H5Sencode/H5Sdecode Format Change -2016-01-05 Setting Bounds for Object Creation in HDF5 1.10.0 +2016-01-05 Setting Bounds for Object Creation in HDF5 1.10.0 -2015-09-15 File Format Changes in HDF5 1.10.0 +2015-09-15 File Format Changes in HDF5 1.10.0 -2015-07-09 Page Buffering +2015-07-09 Page Buffering -2015-06-15 Metadata Cache Image +2015-06-15 Metadata Cache Image -2015-04-29 New Datatypes +2015-04-29 New Datatypes -2015-04-24 Collective Metadata Writes +2015-04-24 Collective Metadata Writes -2015-04-23 Enabling Collective Metadata Reads +2015-04-23 Enabling Collective Metadata Reads -2015-03-01 The Tool to Handle HDF5 File Format Compatibility for Chunked Datasets +2015-03-01 The Tool to Handle HDF5 File Format Compatibility for Chunked Datasets -2015-02-12 H5LTget_hardlinks – High-level API to list all the hard links to an object +2015-02-12 H5LTget_hardlinks – High-level API to list all the hard links to an object -2015-02-05 HDF5 Fortran Wrappers Maintenance: Dropping Support for Non-Fortran 2003 Standard Compliant Compilers +2015-02-05 HDF5 Fortran Wrappers Maintenance: Dropping Support for Non-Fortran 2003 Standard Compliant Compilers -2015-02-02 New Autotools Behavior +2015-02-02 New Autotools Behavior -2014-12-10 HDF5 Virtual Dataset +2014-12-10 HDF5 Virtual Dataset -2014-12-01 Allocate/Free Mismatches in HDF5 Filter Code on Windows +2014-12-01 Allocate/Free Mismatches in HDF5 Filter Code on Windows -2014-09-16 Virtual Object Layer +2014-09-16 Virtual Object Layer -2014-08-27 Chunking and Compression Performance Tool Requirements +2014-08-27 Chunking and Compression Performance Tool Requirements -2014-07-29 Replacing H5Fis_hdf5() with H5Fis_accessible() +2014-07-29 Replacing H5Fis_hdf5() with H5Fis_accessible() -2014-07-22 Switching to a 64-bit hid_t Space in HDF5 +2014-07-22 Switching to a 64-bit hid_t Space in HDF5 -2014-07-17 Data Analysis Extensions +2014-07-17 Data Analysis Extensions -2014-07-07 Virtual Object Layer +2014-07-07 Virtual Object Layer -2014-05-24 HDF5 Compression Demystified +2014-05-24 HDF5 Compression Demystified -2014-03-18 Freeing Memory Allocated by the HDF5 Library +2014-03-18 Freeing Memory Allocated by the HDF5 Library -2014-03-13 Options to handle compatibility issues for HDF5 files +2014-03-13 Options to handle compatibility issues for HDF5 files -2014-02-24 Design: Metadata Cache Logging +2014-02-24 Design: Metadata Cache Logging -2013-12-11 Fine-Grained Control of Metadata Cache Flushes +2013-12-11 Fine-Grained Control of Metadata Cache Flushes -2013-09-30 Read Attempts for Metadata with Checksum +2013-09-30 Read Attempts for Metadata with Checksum -2013-09-19 Core VFD Backing Store Paged Writes +2013-09-19 Core VFD Backing Store Paged Writes -2013-06-30 Flush Dependency Testing +2013-06-30 Flush Dependency Testing -2013-03-16 HDF5 Dynamically Loaded Filters +2013-03-16 HDF5 Dynamically Loaded Filters -2012-11-14 Direct Chunk Write +2012-11-14 Direct Chunk Write -2012-10-24 HDF5 File Space Management +2012-10-24 HDF5 File Space Management -2012-08-28 New HDF5 API Routines for HPC Applications - Read/Write Multiple Datasets in an HDF5 file +2012-08-28 New HDF5 API Routines for HPC Applications - Read/Write Multiple Datasets in an HDF5 file -2012-05-23 HDF5 File Space Management: Paged Aggregation +2012-05-23 HDF5 File Space Management: Paged Aggregation -2012-05-01 HDF5 File Image Operations +2012-05-01 HDF5 File Image Operations -2012-03-05 Enabling a Strict Consistency Semantics Model in Parallel HDF5 +2012-03-05 Enabling a Strict Consistency Semantics Model in Parallel HDF5 -2012-02-20 h5repack: Improved Hyperslab selections for Large Chunked Datasets +2012-02-20 h5repack: Improved Hyperslab selections for Large Chunked Datasets -2012-01-20 A Maintainer's Guide for the Datatype Module in HDF5 Library +2012-01-20 A Maintainer's Guide for the Datatype Module in HDF5 Library -2012-01-04 Actual I/O Mode +2012-01-04 Actual I/O Mode -2011-11-19 New public functions to handle comparison +2011-11-19 New public functions to handle comparison -2011-08-25 Merging Named Datatypes in H5Ocopy() +2011-08-25 Merging Named Datatypes in H5Ocopy() -2011-08-11 Expanding the HDF5 Hyperslab Selection Interface +2011-08-11 Expanding the HDF5 Hyperslab Selection Interface -2011-07-26 HDF5 File Space Allocation and Aggregation +2011-07-26 HDF5 File Space Allocation and Aggregation -2011-06-14 Refactor h5dump to Improve Maintenance +2011-06-14 Refactor h5dump to Improve Maintenance -2011-03-29 Support External Link Open File Cache in HDF5 Tools +2011-03-29 Support External Link Open File Cache in HDF5 Tools -2011-01-18 h5diff Attribute Comparisons +2011-01-18 h5diff Attribute Comparisons -2010-11-22 SWMR Timeouts +2010-11-22 SWMR Timeouts -2010-11-04 Caching Files Opened Through External Links +2010-11-04 Caching Files Opened Through External Links -2010-10-18 HDF5 File and Object Comparison Specification +2010-10-18 HDF5 File and Object Comparison Specification -2010-09-02 h5edit – An HDF5 File Editing Tool +2010-09-02 h5edit – An HDF5 File Editing Tool -2010-07-27 Reserved Characters for HDF5 Applications +2010-07-27 Reserved Characters for HDF5 Applications -2010-07-26 High-Level HDF5 API routines for HPC Applications +2010-07-26 High-Level HDF5 API routines for HPC Applications -2010-05-11 h5diff – Exclude Object(s) from Comparison +2010-05-11 h5diff – Exclude Object(s) from Comparison -2010-04-22 Generating attributes into an object with a tool +2010-04-22 Generating attributes into an object with a tool -2010-03-12 Supporting HDF5 1.8 in HDF5 Command Line Tools +2010-03-12 Supporting HDF5 1.8 in HDF5 Command Line Tools -2009-12-18 Supporting soft-link and external-link for h5diff +2009-12-18 Supporting soft-link and external-link for h5diff -2009-09-07 HDF5 Tools Library Functions +2009-09-07 HDF5 Tools Library Functions -2009-06-12 Default EPSILON values for comparing floating point data +2009-06-12 Default EPSILON values for comparing floating point data -2008-12-18 Reporting of Non-Comparable Datasets by h5diff +2008-12-18 Reporting of Non-Comparable Datasets by h5diff -2008-12-05 External Link Traversal Callback +2008-12-05 External Link Traversal Callback -2008-10-30 Setting Raw Data Chunk Cache Parameters in HDF5 +2008-10-30 Setting Raw Data Chunk Cache Parameters in HDF5 -2008-09-15 Performance Report for Free-space Manager +2008-09-15 Performance Report for Free-space Manager -2008-09-04 Setting File Access Property List for accessing External Link +2008-09-04 Setting File Access Property List for accessing External Link -2008-07-28 Native Time Types in HDF5 +2008-07-28 Native Time Types in HDF5 -2008-07-23 Special Values in HDF5 +2008-07-23 Special Values in HDF5 -2008-03-01 Dynamic Transformations to HDF5 Data +2008-03-01 Dynamic Transformations to HDF5 Data -2008-02-09 Using SVN branching to improve software development process at THG +2008-02-09 Using SVN branching to improve software development process at THG -2008-02-06 Maintaining the HISTORY.txt and RELEASE.txt files in HDF5 +2008-02-06 Maintaining the HISTORY.txt and RELEASE.txt files in HDF5 -2007-11-11 Addressing HDF5 file corruption issue +2007-11-11 Addressing HDF5 file corruption issue -2007-10-18 NaN detection in HDF5 +2007-10-18 NaN detection in HDF5 -2007-08-01 Metadata Journaling to Improve Crash Survivability +2007-08-01 Metadata Journaling to Improve Crash Survivability -2007-04-13 API Compatibility Strategies for HDF5 +2007-04-13 API Compatibility Strategies for HDF5 -2007-01-15 A "Private" Heap for HDF5 +2007-01-15 A "Private" Heap for HDF5 -2006-06-23 Performance Comparison of Collective I/O and Independent I/O with Derived Datatypes +2006-06-23 Performance Comparison of Collective I/O and Independent I/O with Derived Datatypes -2006-06-04 h5stat tool +2006-06-04 h5stat tool -2006-05-05 Simple Performance Test on Fletcher32 Filter +2006-05-05 Simple Performance Test on Fletcher32 Filter -2006-04-10 Requirement Specifications of an HDF5 File Format Validation Tool +2006-04-10 Requirement Specifications of an HDF5 File Format Validation Tool -2006-03-17 Proposed changes to the sec2 driver +2006-03-17 Proposed changes to the sec2 driver -2006-01-24 Mapping FITS data to HDF5 +2006-01-24 Mapping FITS data to HDF5 -2004-08-11 Conversion Between Text and Datatype +2004-08-11 Conversion Between Text and Datatype
          diff --git a/develop/_r_f_c_8dox.html b/develop/_r_f_c_8dox.html index 0a3e58965f6..5bce39830eb 100644 --- a/develop/_r_f_c_8dox.html +++ b/develop/_r_f_c_8dox.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
          API Reference
          diff --git a/develop/_r_m.html b/develop/_r_m.html index e42e17267fd..f9e54a22c81 100644 --- a/develop/_r_m.html +++ b/develop/_r_m.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
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          diff --git a/develop/_r_m_t.html b/develop/_r_m_t.html index d88592735e7..1d0723e31d7 100644 --- a/develop/_r_m_t.html +++ b/develop/_r_m_t.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
          HDF5 1.15.0.bca2806
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          diff --git a/develop/_reference_manual_8dox.html b/develop/_reference_manual_8dox.html index d862eb9c184..773af5c2cdd 100644 --- a/develop/_reference_manual_8dox.html +++ b/develop/_reference_manual_8dox.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
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          API Reference
          diff --git a/develop/_s_e_c_u_r_i_t_y_8md.html b/develop/_s_e_c_u_r_i_t_y_8md.html index eb25a8fc567..60410ebd44a 100644 --- a/develop/_s_e_c_u_r_i_t_y_8md.html +++ b/develop/_s_e_c_u_r_i_t_y_8md.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
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          diff --git a/develop/_s_p_e_c.html b/develop/_s_p_e_c.html index 093c43d447b..d80ed6d1317 100644 --- a/develop/_s_p_e_c.html +++ b/develop/_s_p_e_c.html @@ -37,7 +37,7 @@ Logo -
          HDF5 1.15.0 +
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          API Reference
          @@ -141,7 +141,7 @@ Other

        diff --git a/develop/_s_w_m_r.html b/develop/_s_w_m_r.html index 236592b20fa..f3e6291a3fe 100644 --- a/develop/_s_w_m_r.html +++ b/develop/_s_w_m_r.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -121,110 +121,130 @@ $(document).ready(function(){initNavTree('_s_w_m_r.html',''); initResizable(); }
        Introduction to Single-Writer/Multiple-Reader (SWMR)
        -
        - - Introduction to Single-Writer_Multiple-Reader (SWMR) - -

        Introduction to SWMR

        -

        The Single-Writer / Multiple-Reader (SWMR) feature enables multiple processes to read an HDF5 file while it is being written to (by a single process) without using locks or requiring communication between processes.

        -

        tutr-swmr1.png +

        +Introduction to SWMR

        +

        The Single-Writer / Multiple-Reader (SWMR) feature enables multiple processes to read an HDF5 file while it is being written to (by a single process) without using locks or requiring communication between processes. tutr-swmr1.png

        All communication between processes must be performed via the HDF5 file. The HDF5 file under SWMR access must reside on a system that complies with POSIX write() semantics.

        The basic engineering challenge for this to work was to ensure that the readers of an HDF5 file always see a coherent (though possibly not up to date) HDF5 file.

        -

        The issue is that when writing data there is information in the metadata cache in addition to the physical file on disk:

        -

        tutr-swmr2.png -

        However, the readers can only see the state contained in the physical file:

        -

        tutr-swmr3.png +

        The issue is that when writing data there is information in the metadata cache in addition to the physical file on disk: tutr-swmr2.png

        +

        However, the readers can only see the state contained in the physical file: tutr-swmr3.png

        The SWMR solution implements dependencies on when the metadata can be flushed to the file. This ensures that metadata cache flush operations occur in the proper order, so that there will never be internal file pointers in the physical file that point to invalid (unflushed) file addresses.

        A beneficial side effect of using SWMR access is better fault tolerance. It is more difficult to corrupt a file when using SWMR.

        -

        Documentation

        -

        SWMR User's Guide

        -

        HDF5 Library APIs

        +

        +Documentation

        +

        +User Guide

        +

        SWMR User Guide

        +

        +HDF5 Library APIs

          -
        • H5F_START_SWMR_WRITE — Enables SWMR writing mode for a file
        • -
        • H5DO_APPEND — Appends data to a dataset along a specified dimension
        • -
        • H5P_SET_OBJECT_FLUSH_CB — Sets a callback function to invoke when an object flush occurs in the file
        • -
        • H5P_GET_OBJECT_FLUSH_CB — Retrieves the object flush property values from the file access property list
        • -
        • H5O_DISABLE_MDC_FLUSHES — Prevents metadata entries for an HDF5 object from being flushed from the metadata cache to storage
        • -
        • H5O_ENABLE_MDC_FLUSHES — Enables flushing of dirty metadata entries from a file’s metadata cache
        • -
        • H5O_ARE_MDC_FLUSHES_DISABLED — Determines if an HDF5 object has had flushes of metadata entries disabled
        • +
        • +H5Fstart_swmr_write — Enables SWMR writing mode for a file
        • +
        • +H5DOappend — Appends data to a dataset along a specified dimension
        • +
        • +H5Pset_object_flush_cb — Sets a callback function to invoke when an object flush occurs in the file
        • +
        • +H5Pget_object_flush_cb — Retrieves the object flush property values from the file access property list
        • +
        • +H5Odisable_mdc_flushes — Prevents metadata entries for an HDF5 object from being flushed from the metadata cache to storage
        • +
        • +H5Oenable_mdc_flushes — Enables flushing of dirty metadata entries from a file’s metadata cache
        • +
        • +H5Oare_mdc_flushes_disabled — Determines if an HDF5 object has had flushes of metadata entries disabled
        -

        Tools

        +

        +Tools

          -
        • h5watch — Outputs new records appended to a dataset as the dataset grows
        • -
        • h5format_convert — Converts the layout format version and chunked indexing types of datasets created with HDF5-1.10 so that applications built with HDF5-1.8 can access them
        • +
        • h5watch — Outputs new records appended to a dataset as the dataset grows
        • +
        • h5format_convert — Converts the layout format version and chunked indexing types of datasets created with HDF5-1.10 so that applications built with HDF5-1.8 can access them
        • h5clear — Clears superblock status_flags field, removes metadata cache image, prints EOA and EOF, or sets EOA of a file
        -

        Design Documents

        -

        Error while fetching page properties report data:

        -

        Programming Model

        -

        Please be aware that the SWMR feature requires that an HDF5 file be created with the latest file format. See H5P_SET_LIBVER_BOUNDS for more information.

        +

        +Design Documents

        +

        +Programming Model

        +

        Please be aware that the SWMR feature requires that an HDF5 file be created with the latest file format. See H5Pset_libver_bounds for more information.

        To use SWMR follow the the general programming model for creating and accessing HDF5 files and objects along with the steps described below.

        -

        SWMR Writer:

        +

        +SWMR Writer

        The SWMR writer either opens an existing file and objects or creates them as follows.

        -

        Open an existing file:

        -

        Call H5Fopen using the H5F_ACC_SWMR_WRITE flag. -Begin writing datasets. -Periodically flush data. -Create a new file:

        -

        Call H5Fcreate using the latest file format. -Create groups, datasets and attributes, and then close the attributes. -Call H5F_START_SWMR_WRITE to start SWMR access to the file. -Periodically flush data.

        +

        Open an existing file: Call H5Fopen using the H5F_ACC_SWMR_WRITE flag. Begin writing datasets. Periodically flush data.

        +

        Create a new file: Call H5Fcreate using the latest file format. Create groups, datasets and attributes, and then close the attributes. Call H5Fstart_swmr_write to start SWMR access to the file. Periodically flush data.

        Example Code:

        -

        Create the file using the latest file format property:

        -

        - fapl = H5Pcreate (H5P_FILE_ACCESS); - status = H5Pset_libver_bounds (fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST); - fid = H5Fcreate (filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); -[Create objects (files, datasets, ...). Close any attributes and named datatype objects. Groups and datasets may remain open before starting SWMR access to them.]

        -

        Start SWMR access to the file:

        -

        status = H5Fstart_swmr_write (fid); -Reopen the datasets and start writing, periodically flushing data:

        -

        status = H5Dwrite (dset_id, ...); - status = H5Dflush (dset_id);

        -

        SWMR Reader:

        +

        Create the file using the latest file format property:

        + +
        fid = H5Fcreate (filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
        +
        // Create objects (files, datasets, ...).
        +
        // Close any attributes and named datatype objects.
        +
        // Groups and datasets may remain open before starting SWMR access to them.
        +
        +
        // Start SWMR access to the file:
        +
        status = H5Fstart_swmr_write (fid);
        +
        +
        // Reopen the datasets and then start writing, periodically flushing data:
        +
        status = H5Dwrite (dset_id, ...);
        +
        status = H5Dflush (dset_id);
        +
        #define H5F_LIBVER_LATEST
        Definition H5Fpublic.h:195
        +
        #define H5F_ACC_TRUNC
        Definition H5Fpublic.h:50
        +
        #define H5P_FILE_ACCESS
        Definition H5Ppublic.h:64
        +
        #define H5P_DEFAULT
        Definition H5Ppublic.h:228
        +
        herr_t H5Pset_libver_bounds(hid_t plist_id, H5F_libver_t low, H5F_libver_t high)
        Controls the range of library release versions used when creating objects in a file.
        +
        herr_t H5Dflush(hid_t dset_id)
        Flushes all buffers associated with a dataset to disk.
        +
        herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf)
        Writes raw data from a buffer to a dataset.
        +
        hid_t H5Fcreate(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id)
        Creates an HDF5 file.
        +
        hid_t H5Pcreate(hid_t cls_id)
        Creates a new property list as an instance of a property list class.
        +
        herr_t H5Fstart_swmr_write(hid_t file_id)
        Retrieves free-space section information for a file.
        +

        +SWMR Reader

        The SWMR reader must continually poll for new data:

        -

        Call H5Fopen using the H5F_ACC_SWMR_READ flag. -Poll, checking the size of the dataset to see if there is new data available for reading. -Read new data, if any.

        +

        Call H5Fopen using the H5F_ACC_SWMR_READ flag. Poll, checking the size of the dataset to see if there is new data available for reading. Read new data, if any.

        Example Code:

        -

        Open the file using the SWMR read flag:

        -

        fid = H5Fopen (filename, H5F_ACC_RDONLY | H5F_ACC_SWMR_READ, H5P_DEFAULT); -Open the dataset and then repeatedly poll the dataset, by getting the dimensions, reading new data, and refreshing:

        -

        dset_id = H5Dopen (...); - space_id = H5Dget_space (...); - while (...) { - status = H5Dread (dset_id, ...); - status = H5Drefresh (dset_id); - space_id = H5Dget_space (...); - }

        -

        Limitations and Scope

        -

        An HDF5 file under SWMR access must reside on a system that complies with POSIX write() semantics. It is also limited in scope as follows:

        -

        The writer process is only allowed to modify raw data of existing datasets by;

        -

        Appending data along any unlimited dimension. -Modifying existing data -The following operations are not allowed (and the corresponding HDF5 files will fail):

        -

        The writer cannot add new objects to the file. -The writer cannot delete objects in the file. -The writer cannot modify or append data with variable length, string or region reference datatypes. -File space recycling is not allowed. As a result the size of a file modified by a SWMR writer may be larger than a file modified by a non-SWMR writer.

        -

        Tools for Working with SWMR

        -

        Two new tools, h5watch and h5clear, are available for use with SWMR. The other HDF5 utilities have also been modified to recognize SWMR:

        -

        The h5watch tool allows a user to monitor the growth of a dataset. -The h5clear tool clears the status flags in the superblock of an HDF5 file. -The rest of the HDF5 tools will exit gracefully but not work with SWMR otherwise.

        -

        Programming Example

        -

        A good example of using SWMR is included with the HDF5 tests in the source code. You can run it while reading the file it creates. If you then interrupt the application and reader and look at the resulting file, you will see that the file is still valid. Follow these steps:

        -

        Download the HDF5-1.10 source code to a local directory on a filesystem (that complies with POSIX write() semantics). Build the software. No special configuration options are needed to use SWMR.

        -

        Invoke two command terminal windows. In one window go into the bin/ directory of the built binaries. In the other window go into the test/ directory of the HDF5-1.10 source code that was just built.

        -

        In the window in the test/ directory compile and run use_append_chunk.c. The example writes a three dimensional dataset by planes (with chunks of size 1 x 256 x 256).

        -

        In the other window (in the bin/ directory) run h5watch on the file created by use_append_chunk.c (use_append_chunk.h5). It should be run while use_append_chunk is executing and you will see valid data displayed with h5watch.

        -

        Interrupt use_append_chunk while it is running, and stop h5watch.

        -

        Use h5clear to clear the status flags in the superblock of the HDF5 file (use_append_chunk.h5).

        -

        View the file with h5dump. You will see that it is a valid file even though the application did not close properly. It will contain data up to the point that it was interrupted.

        - - -
        +
        // Open the file using the SWMR read flag:
        + +
        // Open the dataset and then repeatedly poll the dataset, by getting the dimensions, reading new data, and refreshing:
        +
        dset_id = H5Dopen (...);
        +
        space_id = H5Dget_space (...);
        +
        while (...) {
        +
        status = H5Dread (dset_id, ...);
        +
        status = H5Drefresh (dset_id);
        +
        space_id = H5Dget_space (...);
        +
        }
        +
        #define H5F_ACC_RDONLY
        Definition H5Fpublic.h:48
        +
        #define H5F_ACC_SWMR_READ
        Definition H5Fpublic.h:60
        +
        #define H5Dopen
        Definition H5version.h:903
        +
        herr_t H5Drefresh(hid_t dset_id)
        Refreshes all buffers associated with a dataset.
        +
        herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf)
        Reads raw data from a dataset into a provided buffer.
        +
        hid_t H5Dget_space(hid_t dset_id)
        Returns an identifier for a copy of the dataspace for a dataset.
        +
        hid_t H5Fopen(const char *filename, unsigned flags, hid_t fapl_id)
        Opens an existing HDF5 file.
        +

        +Limitations and Scope

        +

        An HDF5 file under SWMR access must reside on a system that complies with POSIX write() semantics. It is also limited in scope as follows.

        +

        The writer process is only allowed to modify raw data of existing datasets by; Appending data along any unlimited dimension. Modifying existing data The following operations are not allowed (and the corresponding HDF5 files will fail)

          +
        • The writer cannot add new objects to the file.
        • +
        • The writer cannot delete objects in the file.
        • +
        • The writer cannot modify or append data with variable length, string or region reference datatypes.
        • +
        • File space recycling is not allowed. As a result the size of a file modified by a SWMR writer may be larger than a file modified by a non-SWMR writer.
        • +
        +

        +Tools for Working with SWMR

        +

        Two new tools, h5watch and h5clear, are available for use with SWMR. The other HDF5 utilities have also been modified to recognize SWMR

          +
        • The h5watch tool allows a user to monitor the growth of a dataset.
        • +
        • The h5clear tool clears the status flags in the superblock of an HDF5 file.
        • +
        • The rest of the HDF5 tools will exit gracefully but not work with SWMR otherwise.
        • +
        +

        +Programming Example

        +

        A good example of using SWMR is included with the HDF5 tests in the source code. You can run it while reading the file it creates. If you then interrupt the application and reader and look at the resulting file, you will see that the file is still valid. Follow these steps:

          +
        • Download the HDF5 source code to a local directory on a filesystem (that complies with POSIX write() semantics). Build the software. No special configuration options are needed to use SWMR.
        • +
        • Invoke two command terminal windows. In one window go into the bin directory of the built binaries. In the other window go into the test directory of the HDF5-1.10 source code that was just built.
        • +
        • In the window in the test directory compile and run use_append_chunk.c. The example writes a three dimensional dataset by planes (with chunks of size 1 x 256 x 256).
        • +
        • In the other window (in the bin directory) run h5watch on the file created by use_append_chunk.c (use_append_chunk.h5). It should be run while use_append_chunk is executing and you will see valid data displayed with h5watch.
        • +
        • Interrupt use_append_chunk while it is running, and stop h5watch.
        • +
        • Use h5clear to clear the status flags in the superblock of the HDF5 file (use_append_chunk.h5).
        • +
        • View the file with h5dump. You will see that it is a valid file even though the application did not close properly. It will contain data up to the point that it was interrupted.
        • +
        +
        diff --git a/develop/_specifications_8dox.html b/develop/_specifications_8dox.html index 820f3eeb26c..f5f74ac8429 100644 --- a/develop/_specifications_8dox.html +++ b/develop/_specifications_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_t_b_l.html b/develop/_t_b_l.html index e5d9d25ca1f..49e8734e167 100644 --- a/develop/_t_b_l.html +++ b/develop/_t_b_l.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_t_n.html b/develop/_t_n.html index 1848db17350..49e58cf4373 100644 --- a/develop/_t_n.html +++ b/develop/_t_n.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -126,10 +126,10 @@ $(document).ready(function(){initNavTree('_t_n.html',''); initResizable(); });
      • Debugging HDF5 Applications
      • HDF5 File Format Discussion
      • HDF5 File Image Operations
      • -
      • HDF5 Filters
      • +
      • Data Pipeline Filters
      • HDF5 Raw I/O Flow Notes
      • Metadata Caching in HDF5
      • -
      • HDF5 Thread Safe library
      • +
      • Thread Safe Library
      • Introduction to Single-Writer/Multiple-Reader (SWMR)
      • Introduction to the Virtual Dataset - VDS
      • HDF5 Library Release Version Numbers
      • diff --git a/develop/_t_n_m_d_c.html b/develop/_t_n_m_d_c.html index 1277cb6748d..445ad068f4a 100644 --- a/develop/_t_n_m_d_c.html +++ b/develop/_t_n_m_d_c.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('_t_n_m_d_c.html',''); initResizable();
        Metadata Caching in HDF5
        -
        Todo:
        Revise this!
        +
        Todo:
        Revise this!

        Introduction

        In the 1.6.4 release, we introduced a re-implementation of the metadata cache. That release contained an incomplete version of the cache which could not be controlled via the API. The version in the 1.8 release is more mature and includes new API calls that allow the user program to configure the metadata cache both on file open and at run time.

        diff --git a/develop/_technical_notes_8dox.html b/develop/_technical_notes_8dox.html index c898d592546..afe13f28e50 100644 --- a/develop/_technical_notes_8dox.html +++ b/develop/_technical_notes_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_thread_safe_8dox.html b/develop/_thread_safe_8dox.html new file mode 100644 index 00000000000..78fe2bcb8e9 --- /dev/null +++ b/develop/_thread_safe_8dox.html @@ -0,0 +1,136 @@ + + + + + + + +HDF5: doxygen/dox/ThreadSafe.dox File Reference + + + + + + + + + + + + + + + + + +
        Please, help us to better serve our user community by answering the following short survey: https://www.hdfgroup.org/website-survey/
        + + +
        +
        + + + + + + + +
        +
        HDF5 1.15.0.bca2806 +
        +
        API Reference
        +
        +
        + + + + +
        +
        + +
        +
        +
        + +
        + +
        +
        + + +
        +
        +
        +
        +
        +
        Loading...
        +
        Searching...
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        No Matches
        +
        +
        +
        +
        + +
        +
        doxygen/dox/ThreadSafe.dox File Reference
        +
        +
        +
        +
        + + + + diff --git a/develop/_tools_8dox.html b/develop/_tools_8dox.html index 9c7aacbc984..be733011749 100644 --- a/develop/_tools_8dox.html +++ b/develop/_tools_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_training_videos_8dox.html b/develop/_training_videos_8dox.html index 2adb188996f..6a162cb0a4b 100644 --- a/develop/_training_videos_8dox.html +++ b/develop/_training_videos_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_u_g.html b/develop/_u_g.html index f9853563288..f5a04b9f744 100644 --- a/develop/_u_g.html +++ b/develop/_u_g.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_users_guide_8dox.html b/develop/_users_guide_8dox.html index 0d83151be30..9fbba09ebe1 100644 --- a/develop/_users_guide_8dox.html +++ b/develop/_users_guide_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_v_d_s.html b/develop/_v_d_s.html index 7ff538952fd..5ff288ca2d9 100644 --- a/develop/_v_d_s.html +++ b/develop/_v_d_s.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -121,79 +121,88 @@ $(document).ready(function(){initNavTree('_v_d_s.html',''); initResizable(); });
        Introduction to the Virtual Dataset - VDS
        -
        - - Introduction to the Virtual Dataset - VDS - +

        +Introduction to VDS

        The HDF5 Virtual Dataset (VDS) feature enables users to access data in a collection of HDF5 files as a single HDF5 dataset and to use the HDF5 APIs to work with that dataset.

        -

        For example, your data may be collected into four files:

        - -

        tutrvds-multimgs.png - -

        You can map the datasets in the four files into a single VDS that can be accessed just like any other dataset:

        - -

        tutrvds-snglimg.png - +

        For example, your data may be collected into four files: tutrvds-multimgs.png

        +

        You can map the datasets in the four files into a single VDS that can be accessed just like any other dataset: tutrvds-snglimg.png

        The mapping between a VDS and the HDF5 source datasets is persistent and transparent to an application. If a source file is missing the fill value will be displayed.

        See the Virtual (VDS) Documentation for complete details regarding the VDS feature.

        -

        The VDS feature was implemented using hyperslab selection (H5S_SELECT_HYPERSLAB). See the tutorial on Reading From or Writing to a Subset of a Dataset for more information on selecting hyperslabs.

        -

        Programming Model -To create a Virtual Dataset you simply follow the HDF5 programming model and add a few additional API calls to map the source code datasets to the VDS.

        -

        Following are the steps for creating a Virtual Dataset:

        -

        Create the source datasets that will comprise the VDS -Create the VDS: ‐ Define a datatype and dataspace (can be unlimited) -‐ Define the dataset creation property list (including fill value) -‐ (Repeat for each source dataset) Map elements from the source dataset to elements of the VDS: -Select elements in the source dataset (source selection) -Select elements in the virtual dataset (destination selection) -Map destination selections to source selections (see Functions for Working with a VDS)

        -

        ‐ Call H5Dcreate using the properties defined above -Access the VDS as a regular HDF5 dataset -Close the VDS when finished

        -

        Functions for Working with a VDS -The H5P_SET_VIRTUAL API sets the mapping between virtual and source datasets. This is a dataset creation property list. Using this API will change the layout of the dataset to H5D_VIRTUAL. As with specifying any dataset creation property list, an instance of the property list is created, modified, passed into the dataset creation call and then closed:

        -

        dcpl = H5Pcreate (H5P_DATASET_CREATE);

        -

        src_space = H5screate_simple ... - status = H5Sselect_hyperslab (space, ... - status = H5Pset_virtual (dcpl, space, SRC_FILE[i], SRC_DATASET[i], src_space);

        -

        dset = H5Dcreate2 (file, DATASET, H5T_NATIVE_INT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT);

        -

        status = H5Pclose (dcpl); -There are several other APIs introduced with Virtual Datasets, including query functions. For details see the complete list of HDF5 library APIs that support Virtual Datasets

        -

        Limitations -This feature requires HDF5-1.10. -The number of source datasets is unlimited. However, there is a limit on the size of each source dataset.

        -

        Programming Examples -Example 1 -This example creates three HDF5 files, each with a one-dimensional dataset of 6 elements. The datasets in these files are the source datasets that are then used to create a 4 x 6 Virtual Dataset with a fill value of -1. The first three rows of the VDS are mapped to the data from the three source datasets as shown below:

        -

        tutrvds-ex.png

        -

        In this example the three source datasets are mapped to the VDS with this code:

        -
        src\_space = H5Screate\_simple (RANK1, dims, NULL);
        -for (i = 0; i < 3; i++) {
        -    start[0] = (hsize\_t)i;
        -    /* Select i-th row in the virtual dataset; selection in the source datasets is the same. */
        -    status = H5Sselect\_hyperslab (space, H5S\_SELECT\_SET, start, NULL, count, block);
        -    status = H5Pset\_virtual (dcpl, space, SRC\_FILE[i], SRC\_DATASET[i], src\_space);
        -}
        -
        -

        After the VDS is created and closed, it is reopened. The property list is then queried to determine the layout of the dataset and its mappings, and the data in the VDS is read and printed.

        -

        This example is in the HDF5 source code and can be obtained from here:

        -

        C Example

        +

        The VDS feature was implemented using hyperslab selection (H5Sselect_hyperslab). See the tutorial on Reading From or Writing to a Subset of a Dataset for more information on selecting hyperslabs.

        +

        +Programming Model

        +

        To create a Virtual Dataset you simply follow the HDF5 programming model and add a few additional API calls to map the source code datasets to the VDS.

        +

        Following are the steps for creating a Virtual Dataset:

          +
        • Create the source datasets that will comprise the VDS
        • +
        • Create the VDS: ‐ Define a datatype and dataspace (can be unlimited)
        • +
        • Define the dataset creation property list (including fill value)
        • +
        • (Repeat for each source dataset) Map elements from the source dataset to elements of the VDS
        • +
        • Select elements in the source dataset (source selection)
        • +
        • Select elements in the virtual dataset (destination selection)
        • +
        • Map destination selections to source selections (see Functions for Working with a VDS)
        • +
        • Call H5Dcreate using the properties defined above
        • +
        • Access the VDS as a regular HDF5 dataset
        • +
        • Close the VDS when finished
        • +
        +

        Functions for Working with a VDS

        +

        The H5Pset_virtual API sets the mapping between virtual and source datasets. This is a dataset creation property list. Using this API will change the layout of the dataset to H5D_VIRTUAL. As with specifying any dataset creation property list, an instance of the property list is created, modified, passed into the dataset creation call and then closed:

        +
        src_space = H5screate_simple ...
        +
        status = H5Sselect_hyperslab (space, ...
        +
        status = H5Pset_virtual (dcpl, space, SRC_FILE[i], SRC_DATASET[i], src_space);
        +
        dset = H5Dcreate2 (file, DATASET, H5T_NATIVE_INT, space, H5P_DEFAULT, dcpl, H5P_DEFAULT);
        +
        status = H5Pclose (dcpl);
        +
        #define H5P_DEFAULT
        Definition H5Ppublic.h:228
        +
        #define H5P_DATASET_CREATE
        Definition H5Ppublic.h:68
        +
        herr_t H5Pset_virtual(hid_t dcpl_id, hid_t vspace_id, const char *src_file_name, const char *src_dset_name, hid_t src_space_id)
        Sets the mapping between virtual and source datasets.
        +
        hid_t H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id)
        Creates a new dataset and links it into the file.
        +
        herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[], const hsize_t stride[], const hsize_t count[], const hsize_t block[])
        Selects a hyperslab region to add to the current selected region.
        +
        #define H5T_NATIVE_INT
        Definition H5Tpublic.h:780
        +
        herr_t H5Pclose(hid_t plist_id)
        Terminates access to a property list.
        +
        hid_t H5Pcreate(hid_t cls_id)
        Creates a new property list as an instance of a property list class.
        +

        There are several other APIs introduced with Virtual Datasets, including query functions. For details see the complete list of HDF5 library APIs that support Virtual Datasets.

        +

        Limitations

        +

        This feature was introduced in HDF5-1.10.

        +

        The number of source datasets is unlimited. However, there is a limit on the size of each source dataset.

        +

        +Programming Examples

        +

        Example 1 This example creates three HDF5 files, each with a one-dimensional dataset of 6 elements. The datasets in these files are the source datasets that are then used to create a 4 x 6 Virtual Dataset with a fill value of -1. The first three rows of the VDS are mapped to the data from the three source datasets as shown below: tutrvds-ex.png

        +

        In this example the three source datasets are mapped to the VDS with this code:

        >
        +
        src_space = H5Screate_simple (RANK1, dims, NULL);
        +
        for (i = 0; i &lt; 3; i++) {
        +
        start[0] = (hsize_t)i;
        +
        // Select i-th row in the virtual dataset; selection in the source datasets is the same.
        +
        status = H5Sselect_hyperslab (space, H5S_SELECT_SET, start, NULL, count, block);
        +
        status = H5Pset_virtual (dcpl, space, SRC_FILE[i], SRC_DATASET[i], src_space);
        +
        }
        +
        endcode>
        +
        +
        After the VDS is created and closed, it is reopened. The property list is then queried to determine the
        +
        layout of the dataset and its mappings, and the data in the VDS is read and printed.
        +
        +
        This example is in the HDF5 source code and can be obtained from here:
        +
        <h4>C Example</h4>
        +
        For details on compiling an HDF5 application: [ Compiling HDF5 Applications ]
        +
        +
        <h4>Example 2</h4>
        +
        This example shows how to use a C-style printf statement for specifying multiple source datasets as one virtual
        +
        dataset. Only one mapping is required. In other words only one #H5Pset_virtual call is needed to map multiple datasets.
        +
        It creates a 2-dimensional unlimited VDS. Then it re-opens the file, makes queries, and reads the virtual dataset.
        +
        +
        The source datasets are specified as A-0, A-1, A-2, and A-3. These are mapped to the virtual dataset with one call:
        +
        \code
        +
        status = H5Pset_virtual (dcpl, vspace, SRCFILE, "A-%b", src_space);
        +
        @ H5S_SELECT_SET
        Definition H5Spublic.h:87
        +
        uint64_t hsize_t
        Definition H5public.h:301
        +
        hid_t H5Screate_simple(int rank, const hsize_t dims[], const hsize_t maxdims[])
        Creates a new simple dataspace and opens it for access.
        +

        The b indicates that the block count of the selection in the dimension should be used.

        +

        C Example

        For details on compiling an HDF5 application: [ Compiling HDF5 Applications ]

        -

        Example 2 -This example shows how to use a C-style printf statement for specifying multiple source datasets as one virtual dataset. Only one mapping is required. In other words only one H5P_SET_VIRTUAL call is needed to map multiple datasets. It creates a 2-dimensional unlimited VDS. Then it re-opens the file, makes queries, and reads the virtual dataset.

        -

        The source datasets are specified as A-0, A-1, A-2, and A-3. These are mapped to the virtual dataset with one call:

        -
        status = H5Pset\_virtual (dcpl, vspace, SRCFILE, "/A-%b", src\_space);
        -
        -

        The %b indicates that the block count of the selection in the dimension should be used.

        -

        C Example

        -

        For details on compiling an HDF5 application: [ Compiling HDF5 Applications ]

        -

        Using h5dump with a VDS -The h5dump utility can be used to view a VDS. The h5dump output for a VDS looks exactly like that for any other dataset. If h5dump cannot find a source dataset then the fill value will be displayed.

        -

        You can determine that a dataset is a VDS by looking at its properties with h5dump -p. It will display each source dataset mapping, beginning with Mapping 0. Below is an excerpt of the output of h5dump -p on the vds.h5 file created in Example 1.You can see that the entire source file a.h5 is mapped to the first row of the /VDS dataset:

        - -

        tutrvds-map.png

        - -
        +

        Using h5dump with a VDS The h5dump utility can be used to view a VDS. The h5dump output for a VDS looks exactly like that for any other dataset. If h5dump cannot find a source dataset then the fill value will be displayed.

        +

        You can determine that a dataset is a VDS by looking at its properties with

        h5dump -p
        +

        It will display each source dataset mapping, beginning with Mapping 0. Below is an excerpt of the output of

        h5dump -p
        +

        on the vds.h5 file created in Example 1.You can see that the entire source file a.h5 is mapped to the first row of the VDS dataset.

        +

        tutrvds-map.png

        +
        diff --git a/develop/_v_f_l.html b/develop/_v_f_l.html index 9381065d9f5..0058445d21a 100644 --- a/develop/_v_f_l.html +++ b/develop/_v_f_l.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_v_o_l__connector.html b/develop/_v_o_l__connector.html index d38922bef48..bfe6c0a9b41 100644 --- a/develop/_v_o_l__connector.html +++ b/develop/_v_o_l__connector.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -162,7 +162,7 @@ VOL-Related HDF5 Header Files H5PLextern.h Needed if your connector will be built as a plugin. -

        Many VOL connectors are listed on The HDF Group's VOL plugin registration page, located at: Registered VOL Connectors. Not all of these VOL connectors are supported by The HDF Group and the level of completeness varies, but the connectors found there can serve as examples of working implementations

        +

        Many VOL connectors are listed on The HDF Group's VOL plugin registration page, located at: Registered VOL Connectors. Not all of these VOL connectors are supported by The HDF Group and the level of completeness varies, but the connectors found there can serve as examples of working implementations

        Library vs Plugin vs Internal

        When building a VOL connector, you have several options:

        @@ -206,7 +206,7 @@ H5VL_class_t Boilerplate

        Every connector needs a name and value. The library will use these when loading and registering the connector (as described in the HDF5 Virtual Object Layer (VOL)), so they should be unique in your ecosystem.

        VOL connector values are integers, with a maximum value of 65535. Values from 0 to 255 are reserved for internal use by The HDF Group. The native VOL connector has a value of 0. Values of 256 to 511 are for connector testing and should not be found in the wild. Values of 512 to 65535 are for external connectors.

        As is the case with HDF5 filters, The HDF Group can assign you an official VOL connector value. Please contact help@hdfgroup.org for help with this. We currently do not register connector names, though the name you've chosen will appear on the registered VOL connectors page.

        -

        As noted above, registered VOL connectors will be listed at: Registered VOL Connectors

        +

        As noted above, registered VOL connectors will be listed at: Registered VOL Connectors

        A new conn_version field has been added to the class struct for 1.13. This field is currently not used by the library so its use is determined by the connector author. Best practices for this field will be determined in the near future and this part of the guide will be updated.

        The cap_flags field is used to determine the capabilities of the VOL connector. At this time, the use of this field is limited to indicating thread-safety, asynchronous capabilities, and ability to produce native HDF5 files. Supported flags can be found in H5VLconnector.h.

        // Capability flags for connector
        #define H5VL_CAP_FLAG_NONE 0 // No special connector capabilities
        diff --git a/develop/_v_o_l_conn_guide_8dox.html b/develop/_v_o_l_conn_guide_8dox.html index 2851854ce6c..b18e196a37b 100644 --- a/develop/_v_o_l_conn_guide_8dox.html +++ b/develop/_v_o_l_conn_guide_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_view_tools.html b/develop/_view_tools.html index 52ef9a6a40a..e29a1ab6df5 100644 --- a/develop/_view_tools.html +++ b/develop/_view_tools.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_view_tools2_8dox.html b/develop/_view_tools2_8dox.html index 1ea9f55d7d9..150c6fada2f 100644 --- a/develop/_view_tools2_8dox.html +++ b/develop/_view_tools2_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_view_tools_8dox.html b/develop/_view_tools_8dox.html index 24bfa999c79..e3f38bbcfa3 100644 --- a/develop/_view_tools_8dox.html +++ b/develop/_view_tools_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_view_tools_command.html b/develop/_view_tools_command.html index 8ceac8ffd17..9d411aaa234 100644 --- a/develop/_view_tools_command.html +++ b/develop/_view_tools_command.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -124,12 +124,12 @@ $(document).ready(function(){initNavTree('_view_tools_command.html',''); initRes

        Navigate back: Main / Getting Started with HDF5


        Obtain Tools and Files (Optional)

        -

        Pre-built binaries for Linux and Windows are distributed within the respective HDF5 binary release packages, which can be obtained from the Download HDF5 page.

        +

        Pre-built binaries for Linux and Windows are distributed within the respective HDF5 binary release packages, which can be obtained from the Download HDF5 page.

        HDF5 files can be obtained from various places such as HDF5 Examples and HDF-EOS and Tools and Information Center. Specifically, the following examples are used in this tutorial topic:

        Tutorial Topics

        diff --git a/develop/_view_tools_convert.html b/develop/_view_tools_convert.html index c8784d8ccc2..1a25a4301d0 100644 --- a/develop/_view_tools_convert.html +++ b/develop/_view_tools_convert.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_view_tools_edit.html b/develop/_view_tools_edit.html index 38a13a41088..9a286dabf00 100644 --- a/develop/_view_tools_edit.html +++ b/develop/_view_tools_edit.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_view_tools_j_p_s_s.html b/develop/_view_tools_j_p_s_s.html index f47d94d23af..1c1b9ffd6b8 100644 --- a/develop/_view_tools_j_p_s_s.html +++ b/develop/_view_tools_j_p_s_s.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_view_tools_j_p_s_s_8dox.html b/develop/_view_tools_j_p_s_s_8dox.html index 5adae20733b..7a1971bcc47 100644 --- a/develop/_view_tools_j_p_s_s_8dox.html +++ b/develop/_view_tools_j_p_s_s_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/_view_tools_view.html b/develop/_view_tools_view.html index 47f8b1cc59c..69161b5e8a6 100644 --- a/develop/_view_tools_view.html +++ b/develop/_view_tools_view.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -644,7 +644,7 @@ Array

        See this section for more information on the Array datatype.

        New References

        -

        References were reworked in HDF5 1.12.0. The new reference datatype is H5T_STD_REF. The old reference datatypes are deprecated.

        See also
        sec_reference.
        +

        References were reworked in HDF5 1.12.0. The new reference datatype is H5T_STD_REF. The old reference datatypes are deprecated. see HDF5 References.

        Object Reference

        An Object Reference is a reference to an entire object (attribute, dataset, group, or named datatype). A dataset with an Object Reference datatype consists of one or more Object References. An Object Reference dataset can be used as an index to an HDF5 file.

        diff --git a/develop/aclocal__fc_8f90.html b/develop/aclocal__fc_8f90.html index 18fe3e2aa4a..159658c856c 100644 --- a/develop/aclocal__fc_8f90.html +++ b/develop/aclocal__fc_8f90.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/api-compat-macros.html b/develop/api-compat-macros.html index ce12ba987cb..48b05f6238a 100644 --- a/develop/api-compat-macros.html +++ b/develop/api-compat-macros.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/api-compat-macros_8dox.html b/develop/api-compat-macros_8dox.html index b6ea76fe9f0..6a8192276f9 100644 --- a/develop/api-compat-macros_8dox.html +++ b/develop/api-compat-macros_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/bin_2_r_e_a_d_m_e_8md.html b/develop/bin_2_r_e_a_d_m_e_8md.html index 45725e1fac6..7b929974e71 100644 --- a/develop/bin_2_r_e_a_d_m_e_8md.html +++ b/develop/bin_2_r_e_a_d_m_e_8md.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        diff --git a/develop/branches-explained_8md.html b/develop/branches-explained_8md.html index 58038e44c36..7b168871212 100644 --- a/develop/branches-explained_8md.html +++ b/develop/branches-explained_8md.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        diff --git a/develop/class_h5_1_1_abstract_ds.html b/develop/class_h5_1_1_abstract_ds.html index 1ce9ba2a45b..10ecc8a46cf 100644 --- a/develop/class_h5_1_1_abstract_ds.html +++ b/develop/class_h5_1_1_abstract_ds.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/class_h5_1_1_array_type.html b/develop/class_h5_1_1_array_type.html index e93e0ee2cef..1e85e990483 100644 --- a/develop/class_h5_1_1_array_type.html +++ b/develop/class_h5_1_1_array_type.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/class_h5_1_1_atom_type.html b/develop/class_h5_1_1_atom_type.html index e1d94da985f..184e0db173c 100644 --- a/develop/class_h5_1_1_atom_type.html +++ b/develop/class_h5_1_1_atom_type.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/class_h5_1_1_attribute.html b/develop/class_h5_1_1_attribute.html index a800d2b82af..707524796e1 100644 --- a/develop/class_h5_1_1_attribute.html +++ b/develop/class_h5_1_1_attribute.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/class_h5_1_1_attribute_i_exception.html b/develop/class_h5_1_1_attribute_i_exception.html index 29e1c3f8b71..fb126b933b9 100644 --- a/develop/class_h5_1_1_attribute_i_exception.html +++ b/develop/class_h5_1_1_attribute_i_exception.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        diff --git a/develop/class_h5_1_1_common_f_g.html b/develop/class_h5_1_1_common_f_g.html index 58eb452efd3..a58c8d972e0 100644 --- a/develop/class_h5_1_1_common_f_g.html +++ b/develop/class_h5_1_1_common_f_g.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        diff --git a/develop/class_h5_1_1_comp_type.html b/develop/class_h5_1_1_comp_type.html index be03c8a346e..a0ed893b25d 100644 --- a/develop/class_h5_1_1_comp_type.html +++ b/develop/class_h5_1_1_comp_type.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/class_h5_1_1_d_set_acc_prop_list.html b/develop/class_h5_1_1_d_set_acc_prop_list.html index dfa5ee8ce65..8bb99baa2d5 100644 --- a/develop/class_h5_1_1_d_set_acc_prop_list.html +++ b/develop/class_h5_1_1_d_set_acc_prop_list.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/class_h5_1_1_d_set_creat_prop_list.html b/develop/class_h5_1_1_d_set_creat_prop_list.html index f2e73b39b38..5b40b8607b4 100644 --- a/develop/class_h5_1_1_d_set_creat_prop_list.html +++ b/develop/class_h5_1_1_d_set_creat_prop_list.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/class_h5_1_1_d_set_mem_xfer_prop_list.html b/develop/class_h5_1_1_d_set_mem_xfer_prop_list.html index c19e122d7c3..9ddfb8116d0 100644 --- a/develop/class_h5_1_1_d_set_mem_xfer_prop_list.html +++ b/develop/class_h5_1_1_d_set_mem_xfer_prop_list.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        diff --git a/develop/class_h5_1_1_data_set.html b/develop/class_h5_1_1_data_set.html index c7578031e3c..f2e22198e7e 100644 --- a/develop/class_h5_1_1_data_set.html +++ b/develop/class_h5_1_1_data_set.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/class_h5_1_1_data_set_i_exception.html b/develop/class_h5_1_1_data_set_i_exception.html index f2b10061f46..c1514f52452 100644 --- a/develop/class_h5_1_1_data_set_i_exception.html +++ b/develop/class_h5_1_1_data_set_i_exception.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/class_h5_1_1_data_space.html b/develop/class_h5_1_1_data_space.html index f8077fb0ac8..8b29f76c910 100644 --- a/develop/class_h5_1_1_data_space.html +++ b/develop/class_h5_1_1_data_space.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/class_h5_1_1_data_space_i_exception.html b/develop/class_h5_1_1_data_space_i_exception.html index b631b099cbe..c58d1d6ca91 100644 --- a/develop/class_h5_1_1_data_space_i_exception.html +++ b/develop/class_h5_1_1_data_space_i_exception.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/class_h5_1_1_data_type.html b/develop/class_h5_1_1_data_type.html index e6cbc91ee25..2ce1acea6d6 100644 --- a/develop/class_h5_1_1_data_type.html +++ b/develop/class_h5_1_1_data_type.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        API Reference
        diff --git a/develop/class_h5_1_1_data_type_i_exception.html b/develop/class_h5_1_1_data_type_i_exception.html index 0bdff0d32da..f722b4bc4c4 100644 --- a/develop/class_h5_1_1_data_type_i_exception.html +++ b/develop/class_h5_1_1_data_type_i_exception.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_enum_type.html b/develop/class_h5_1_1_enum_type.html index 8a578a8a171..a34cffa51e8 100644 --- a/develop/class_h5_1_1_enum_type.html +++ b/develop/class_h5_1_1_enum_type.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_exception.html b/develop/class_h5_1_1_exception.html index b2be66351bc..7c0b3a2ceed 100644 --- a/develop/class_h5_1_1_exception.html +++ b/develop/class_h5_1_1_exception.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
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        diff --git a/develop/class_h5_1_1_file_acc_prop_list.html b/develop/class_h5_1_1_file_acc_prop_list.html index fe149cc2cdb..fda652f6027 100644 --- a/develop/class_h5_1_1_file_acc_prop_list.html +++ b/develop/class_h5_1_1_file_acc_prop_list.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_file_creat_prop_list.html b/develop/class_h5_1_1_file_creat_prop_list.html index c2559cbf185..e78209ae941 100644 --- a/develop/class_h5_1_1_file_creat_prop_list.html +++ b/develop/class_h5_1_1_file_creat_prop_list.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_file_i_exception.html b/develop/class_h5_1_1_file_i_exception.html index 0e026149a53..a3e4253f07a 100644 --- a/develop/class_h5_1_1_file_i_exception.html +++ b/develop/class_h5_1_1_file_i_exception.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_float_type.html b/develop/class_h5_1_1_float_type.html index 09860bf74d7..e5934699930 100644 --- a/develop/class_h5_1_1_float_type.html +++ b/develop/class_h5_1_1_float_type.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_group.html b/develop/class_h5_1_1_group.html index 4940009ea4e..c18c9b443d9 100644 --- a/develop/class_h5_1_1_group.html +++ b/develop/class_h5_1_1_group.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_group_i_exception.html b/develop/class_h5_1_1_group_i_exception.html index 856412e82a1..1d0204c8185 100644 --- a/develop/class_h5_1_1_group_i_exception.html +++ b/develop/class_h5_1_1_group_i_exception.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_h5_file.html b/develop/class_h5_1_1_h5_file.html index 4790689bb97..1d280b89b17 100644 --- a/develop/class_h5_1_1_h5_file.html +++ b/develop/class_h5_1_1_h5_file.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_h5_library.html b/develop/class_h5_1_1_h5_library.html index 2bf061097ec..876564ee832 100644 --- a/develop/class_h5_1_1_h5_library.html +++ b/develop/class_h5_1_1_h5_library.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/class_h5_1_1_id_component.html b/develop/class_h5_1_1_id_component.html index b084a641d62..1e92ceec5c1 100644 --- a/develop/class_h5_1_1_id_component.html +++ b/develop/class_h5_1_1_id_component.html @@ -37,7 +37,7 @@ Logo -
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        API Reference
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        API Reference
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        API Reference
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        API Reference
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        diff --git a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_java_exception.html b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_java_exception.html index 18219f9e331..9cff01983ad 100644 --- a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_java_exception.html +++ b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_java_exception.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_object_header_exception.html b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_object_header_exception.html index 430ff3626ec..118465809d1 100644 --- a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_object_header_exception.html +++ b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_object_header_exception.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_property_list_interface_exception.html b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_property_list_interface_exception.html index 7350f0f9911..9abccca57ef 100644 --- a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_property_list_interface_exception.html +++ b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_property_list_interface_exception.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_reference_exception.html b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_reference_exception.html index 6412e19e972..4a0fbe9bd34 100644 --- a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_reference_exception.html +++ b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_reference_exception.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_resource_unavailable_exception.html b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_resource_unavailable_exception.html index cd7cffb29e9..2246db53143 100644 --- a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_resource_unavailable_exception.html +++ b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_resource_unavailable_exception.html @@ -37,7 +37,7 @@ Logo -
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        diff --git a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_symbol_table_exception.html b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_symbol_table_exception.html index 38ff0f90056..a990bf08eff 100644 --- a/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_symbol_table_exception.html +++ b/develop/classhdf_1_1hdf5lib_1_1exceptions_1_1_h_d_f5_symbol_table_exception.html @@ -37,7 +37,7 @@ Logo -
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        @@ -2032,7 +2032,7 @@ HDF5 always modifies the options mask provided by the user to set up usage of RA "%%" Replaced with a single "%" (percent) character. -"%<d>b" Where "<d>" is the virtual dataset dimension axis (0-based) and "b" indicates that the block count of the selection in that dimension should be used. The full expression (for example, "%0b") is replaced with a single numeric value when the mapping is evaluated at VDS access time. Example code for many source and virtual dataset mappings is available in the "Examples of Source to Virtual Dataset Mapping" chapter in the RFC: HDF5 Virtual Dataset. +"%<d>b" Where "<d>" is the virtual dataset dimension axis (0-based) and "b" indicates that the block count of the selection in that dimension should be used. The full expression (for example, "%0b") is replaced with a single numeric value when the mapping is evaluated at VDS access time. Example code for many source and virtual dataset mappings is available in the "Examples of Source to Virtual Dataset Mapping" chapter in the RFC: HDF5 Virtual Dataset. If the printf form is used for the source file or dataset names, the selection in the source dataset's dataspace must be fixed-size.
        Source File Resolutions:
        When a source dataset residing in a different file is accessed, the library will search for the source file src_file_name as described below:
          @@ -2065,7 +2065,7 @@ If the printf form is used for the source file or dataset names, the selection i
        -
        See also
        Virtual Dataset Overview
        +
        See also
        Virtual Dataset Overview
        Supporting Functions: H5Pget_layout(), H5Pset_layout(), H5Sget_regular_hyperslab(), H5Sis_regular_hyperslab(), H5Sselect_hyperslab()
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        @@ -1706,7 +1706,7 @@ For optimum performance, the page_size parameter should be a power

        H5Pget_file_image() allows an application to retrieve a copy of the file image designated for a VFD to use as the initial contents of a file.

        If file image callbacks are defined, H5Pget_file_image() will use them when allocating and loading the buffer to return to the application (see H5Pset_file_image_callbacks()). If file image callbacks are not defined, the function will use malloc and memcpy. When malloc and memcpy are used, it is the caller's responsibility to discard the returned buffer with a call to free.

        It is the responsibility of the calling application to free the buffer whose address is returned in buf_ptr_ptr. This can be accomplished with free if file image callbacks have not been set (see H5Pset_file_image_callbacks()) or with the appropriate method if file image callbacks have been set.

        -
        See also
        H5LTopen_file_image(), H5Fget_file_image(), H5Pset_file_image(), H5Pset_file_image_callbacks(), H5Pget_file_image_callbacks(), H5FD_file_image_callbacks_t, H5FD_file_image_op_t, HDF5 File Image Operations.
        +
        See also
        H5LTopen_file_image(), H5Fget_file_image(), H5Pset_file_image(), H5Pset_file_image_callbacks(), H5Pget_file_image_callbacks(), H5FD_file_image_callbacks_t, H5FD_file_image_op_t, HDF5 File Image Operations.
        Since
        1.8.9
        @@ -1751,7 +1751,7 @@ For optimum performance, the page_size parameter should be a power

        H5Pget_file_image_callbacks() retrieves the callback routines set for working with file images opened with the file access property list fapl_id.

        The callbacks must have been previously set with H5Pset_file_image_callbacks() in the file access property list.

        Upon the successful return of H5Pset_file_image_callbacks(), the fields in the instance of the H5FD_file_image_callbacks_t struct pointed to by callbacks_ptr will contain the same values as were passed in the most recent H5Pset_file_image_callbacks() call for the file access property list fapl_id.

        -
        See also
        H5LTopen_file_image(), H5Fget_file_image(), H5Pset_file_image(), H5Pset_file_image_callbacks(), H5Pget_file_image_callbacks(), H5FD_file_image_callbacks_t, H5FD_file_image_op_t, HDF5 File Image Operations.
        +
        See also
        H5LTopen_file_image(), H5Fget_file_image(), H5Pset_file_image(), H5Pset_file_image_callbacks(), H5Pget_file_image_callbacks(), H5FD_file_image_callbacks_t, H5FD_file_image_op_t, HDF5 File Image Operations.
        Since
        1.8.9
        @@ -4558,7 +4558,7 @@ The vfd_config parameter may be NULL. In this case, the reference i
        Returns
        Returns a non-negative value if successful; otherwise, returns a negative value.

        H5Pset_file_image() allows an application to provide a file image to be used as the initial contents of a file. Calling H5Pset_file_image()makes a copy of the buffer specified in buf_ptr of size buf_len.

        Motivation:
        H5Pset_file_image() and other elements of HDF5 are used to load an image of an HDF5 file into system memory and open that image as a regular HDF5 file. An application can then use the file without the overhead of disk I/O.
        -
        Recommended Reading:
        This function is part of the file image operations feature set. It is highly recommended to study the guide [HDF5 File Image Operations] (https://portal.hdfgroup.org/documentation/hdf5-docs/advanced_topics/file_image_ops.html ) before using this feature set. See the “See Also” section below for links to other elements of HDF5 file image operations.
        +
        Recommended Reading:
        This function is part of the file image operations feature set. It is highly recommended to study the guide [HDF5 File Image Operations] (https://support.hdfgroup.org/releases/hdf5/documentation/advanced_topics/file_image_ops.html ) before using this feature set. See the “See Also” section below for links to other elements of HDF5 file image operations.
        See also
        • Within H5Pset_file_image_callbacks():
        • @@ -4608,7 +4608,7 @@ The vfd_config parameter may be NULL. In this case, the reference i

          Sets the callbacks for working with file images.

          Note
          Motivation: H5Pset_file_image_callbacks() and other elements of HDF5 are used to load an image of an HDF5 file into system memory and open that image as a regular HDF5 file. An application can then use the file without the overhead of disk I/O.
          - Recommended Reading: This function is part of the file image operations feature set. It is highly recommended to study the guide [HDF5 File Image Operations] (https://portal.hdfgroup.org/documentation/hdf5-docs/advanced_topics/file_image_ops.html ) before using this feature set. See the “See Also” section below for links to other elements of HDF5 file image operations.
          + Recommended Reading: This function is part of the file image operations feature set. It is highly recommended to study the guide [HDF5 File Image Operations] (https://support.hdfgroup.org/releases/hdf5/documentation/advanced_topics/file_image_ops.html ) before using this feature set. See the “See Also” section below for links to other elements of HDF5 file image operations.
        Parameters
        @@ -5115,7 +5115,7 @@ The vfd_config parameter may be NULL. In this case, the reference i

        Due to the complexity of the cache, a trace/logging feature has been created that can be used by HDF5 developers for debugging and performance analysis. The functions that control this functionality will normally be of use to a very limited number of developers outside of The HDF Group. The functions have been documented to help users create logs that can be sent with bug reports.

        Control of the log functionality is straightforward. Logging is enabled via the H5Pset_mdc_log_options() function, which will modify the file access property list used to open or create a file. This function has a flag that determines whether logging begins at file open or starts in a paused state. Log messages can then be controlled via the H5Fstart_mdc_logging() and H5Fstop_mdc_logging() function.

        H5Pget_mdc_log_options() can be used to examine a file access property list, and H5Fget_mdc_logging_status() will return the current state of the logging flags.

        -

        The log format is described in [Metadata Cache Logging] (https://portal.hdfgroup.org/display/HDF5/Fine-tuning+the+Metadata+Cache).

        +

        The log format is described in [Metadata Cache Logging] (https://support.hdfgroup.org/releases/hdf5/documentation/advanced_topics/Fine-tuning+the+Metadata+Cache).

        Since
        1.10.0
        diff --git a/develop/group___f_c_p_l.html b/develop/group___f_c_p_l.html index a8fe1e52b6b..c30ba6de3aa 100644 --- a/develop/group___f_c_p_l.html +++ b/develop/group___f_c_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5.html b/develop/group___f_h5.html index 9472ee85261..546bf459229 100644 --- a/develop/group___f_h5.html +++ b/develop/group___f_h5.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_a.html b/develop/group___f_h5_a.html index c2fd5907cd4..ce035c1e7ff 100644 --- a/develop/group___f_h5_a.html +++ b/develop/group___f_h5_a.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_d.html b/develop/group___f_h5_d.html index 8400a39da8a..5b662169207 100644 --- a/develop/group___f_h5_d.html +++ b/develop/group___f_h5_d.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_d_o.html b/develop/group___f_h5_d_o.html index 8445af157a8..af05da68abe 100644 --- a/develop/group___f_h5_d_o.html +++ b/develop/group___f_h5_d_o.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_d_s.html b/develop/group___f_h5_d_s.html index e57680963a4..24eb9953a5c 100644 --- a/develop/group___f_h5_d_s.html +++ b/develop/group___f_h5_d_s.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_e.html b/develop/group___f_h5_e.html index 13e38cc5fc8..00459b8705b 100644 --- a/develop/group___f_h5_e.html +++ b/develop/group___f_h5_e.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_e_s.html b/develop/group___f_h5_e_s.html index 085e71444bc..40c52d001de 100644 --- a/develop/group___f_h5_e_s.html +++ b/develop/group___f_h5_e_s.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_f.html b/develop/group___f_h5_f.html index 34bdaac2a22..9ff80aeb25f 100644 --- a/develop/group___f_h5_f.html +++ b/develop/group___f_h5_f.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_g.html b/develop/group___f_h5_g.html index 3a4288b0f2e..0add132935c 100644 --- a/develop/group___f_h5_g.html +++ b/develop/group___f_h5_g.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_i.html b/develop/group___f_h5_i.html index dbb121da999..3de00c84c1a 100644 --- a/develop/group___f_h5_i.html +++ b/develop/group___f_h5_i.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_i_m.html b/develop/group___f_h5_i_m.html index fd4ea591856..5e08b813bdd 100644 --- a/develop/group___f_h5_i_m.html +++ b/develop/group___f_h5_i_m.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_l.html b/develop/group___f_h5_l.html index f302073d32d..c215de379f9 100644 --- a/develop/group___f_h5_l.html +++ b/develop/group___f_h5_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_l_t.html b/develop/group___f_h5_l_t.html index 0d1f63580da..9192d42e08c 100644 --- a/develop/group___f_h5_l_t.html +++ b/develop/group___f_h5_l_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_o.html b/develop/group___f_h5_o.html index 7cd814d2370..5bb96fbecb4 100644 --- a/develop/group___f_h5_o.html +++ b/develop/group___f_h5_o.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_p.html b/develop/group___f_h5_p.html index 4f6749f6a73..f618a3d994e 100644 --- a/develop/group___f_h5_p.html +++ b/develop/group___f_h5_p.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_r.html b/develop/group___f_h5_r.html index c4b3e928a19..8b35fbc898f 100644 --- a/develop/group___f_h5_r.html +++ b/develop/group___f_h5_r.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_s.html b/develop/group___f_h5_s.html index 3d99a0c8a27..87ee442cc7d 100644 --- a/develop/group___f_h5_s.html +++ b/develop/group___f_h5_s.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_t.html b/develop/group___f_h5_t.html index 348140b63ad..55b24adc697 100644 --- a/develop/group___f_h5_t.html +++ b/develop/group___f_h5_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_t_b.html b/develop/group___f_h5_t_b.html index 6d0e1c3f37d..8251a09aa6c 100644 --- a/develop/group___f_h5_t_b.html +++ b/develop/group___f_h5_t_b.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_v_l.html b/develop/group___f_h5_v_l.html index 5ecac563a49..294bc2b1f5d 100644 --- a/develop/group___f_h5_v_l.html +++ b/develop/group___f_h5_v_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_h5_z.html b/develop/group___f_h5_z.html index 4f599064548..68101e5a567 100644 --- a/develop/group___f_h5_z.html +++ b/develop/group___f_h5_z.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_l_e_t_c_h_e_r32.html b/develop/group___f_l_e_t_c_h_e_r32.html index 149af7f9f2a..933a97bf892 100644 --- a/develop/group___f_l_e_t_c_h_e_r32.html +++ b/develop/group___f_l_e_t_c_h_e_r32.html @@ -37,7 +37,7 @@ diff --git a/develop/group___f_m_p_l.html b/develop/group___f_m_p_l.html index b2f9b0e628f..5f4bd7393c9 100644 --- a/develop/group___f_m_p_l.html +++ b/develop/group___f_m_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___g_a_p_l.html b/develop/group___g_a_p_l.html index b7953a5e7d9..8840574ee05 100644 --- a/develop/group___g_a_p_l.html +++ b/develop/group___g_a_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___g_c_p_l.html b/develop/group___g_c_p_l.html index 6112cba30a1..5e104af5917 100644 --- a/develop/group___g_c_p_l.html +++ b/develop/group___g_c_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5.html b/develop/group___h5.html index 28e6306eeb2..4fa2e040814 100644 --- a/develop/group___h5.html +++ b/develop/group___h5.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_a.html b/develop/group___h5_a.html index 469bd27e2d5..8339a25bcaa 100644 --- a/develop/group___h5_a.html +++ b/develop/group___h5_a.html @@ -37,7 +37,7 @@ @@ -126,7 +126,7 @@ $(document).ready(function(){initNavTree('group___h5_a.html',''); initResizable(

        Detailed Description

        An HDF5 attribute is a small metadata object describing the nature and/or intended usage of a primary data object. A primary data object may be a dataset, group, or committed datatype.

        -
        See also
        sec_attribute
        +
        See also
        HDF5 Attributes
        [in]fapl_idFile access property list identifier
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
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        HDF5 1.15.0 +
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        HDF5 1.15.0 +
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        -
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
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        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
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        API Reference
        -
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        -
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        -
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        -
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        -
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        -
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        -
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        -
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        -
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        -
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        diff --git a/develop/group___h5_d.html b/develop/group___h5_d.html index 8e6e982d965..7f08efc967a 100644 --- a/develop/group___h5_d.html +++ b/develop/group___h5_d.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_d_o.html b/develop/group___h5_d_o.html index d73dccfa196..f0e9b270926 100644 --- a/develop/group___h5_d_o.html +++ b/develop/group___h5_d_o.html @@ -37,7 +37,7 @@ @@ -506,7 +506,7 @@ Functions

        offset is an array specifying the logical position of the first element of the chunk in the dataset's dataspace. The length of the offset array must equal the number of dimensions, or rank, of the dataspace. The values in offset must not exceed the dimension limits and must specify a point that falls on a dataset chunk boundary.

        data_size is the size in bytes of the chunk, representing the number of bytes to be read from the buffer buf. If the data chunk has been precompressed, data_size should be the size of the compressed data.

        buf is the memory buffer containing data to be written to the chunk in the file.

        -
        Attention
        Exercise caution when using H5DOread_chunk() and H5DOwrite_chunk(), as they read and write data chunks directly in a file. H5DOwrite_chunk() bypasses hyperslab selection, the conversion of data from one datatype to another, and the filter pipeline to write the chunk. Developers should have experience with these processes before using this function. Please see Using the Direct Chunk Write Function for more information.
        +
        Attention
        Exercise caution when using H5DOread_chunk() and H5DOwrite_chunk(), as they read and write data chunks directly in a file. H5DOwrite_chunk() bypasses hyperslab selection, the conversion of data from one datatype to another, and the filter pipeline to write the chunk. Developers should have experience with these processes before using this function. Please see Using the Direct Chunk Write Function for more information.
        Note
        H5DOread_chunk() and H5DOwrite_chunk() are not supported under parallel and do not support variable length types.
        Example
        The following code illustrates the use of H5DOwrite_chunk to write an entire dataset, chunk by chunk:
        #include <zlib.h>
        diff --git a/develop/group___h5_d_s.html b/develop/group___h5_d_s.html index 568a441238b..c8abfc2e636 100644 --- a/develop/group___h5_d_s.html +++ b/develop/group___h5_d_s.html @@ -37,7 +37,7 @@
        @@ -241,7 +241,7 @@ Functions
        Returns
        Returns a non-negative value if successful; otherwise, returns a negative value.

        Define Dimension Scale dsid to be associated with dimension idx of dataset did.

        -

        Entries are created in the DIMENSION_LIST and REFERENCE_LIST attributes, as defined in section 4.2 of HDF5 Dimension Scale Specification.

        +

        Entries are created in the DIMENSION_LIST and REFERENCE_LIST attributes, as defined in section 4.2 of HDF5 Dimension Scale Specification.

        Fails if:

        • Bad arguments
        • If dsid is not a Dimension Scale
        • @@ -294,7 +294,7 @@ Functions
          Returns
          Returns a non-negative value if successful; otherwise, returns a negative value.
          -

          If possible, deletes association of Dimension Scale dsid with dimension idx of dataset did. This deletes the entries in the DIMENSION_LIST and REFERENCE_LIST attributes, as defined in section 4.2 of HDF5 Dimension Scale Specification.

          +

          If possible, deletes association of Dimension Scale dsid with dimension idx of dataset did. This deletes the entries in the DIMENSION_LIST and REFERENCE_LIST attributes, as defined in section 4.2 of HDF5 Dimension Scale Specification.

          Fails if:

          • Bad arguments
          • The dataset did or dsid do not exist
          • @@ -693,7 +693,7 @@ Functions
            Returns
            Returns a non-negative value if successful; otherwise, returns a negative value.
            -

            The dataset dsid is converted to a Dimension Scale dataset, as defined above. Creates the CLASS attribute, set to the value "DIMENSION_SCALE" and an empty REFERENCE_LIST attribute, as described in HDF5 Dimension Scale Specification. (PDF, see section 4.2).

            +

            The dataset dsid is converted to a Dimension Scale dataset, as defined above. Creates the CLASS attribute, set to the value "DIMENSION_SCALE" and an empty REFERENCE_LIST attribute, as described in HDF5 Dimension Scale Specification. (PDF, see section 4.2).

            If dimname is specified, then an attribute called NAME is created, with the value dimname.

            Fails if:

            • Bad arguments
            • @@ -701,7 +701,7 @@ Functions
            • If dsid is a dataset which already has dimension scales

            If the dataset was created with the Table, Image, or Palette interface [9], it is not recommended to convert to a Dimension Scale. (These Datasets will have a CLASS Table, Image, or Palette.)

            -
            Todo:
            what is [9] after Palette interface?
            +
            Todo:
            what is [9] after Palette interface?
            diff --git a/develop/group___h5_e.html b/develop/group___h5_e.html index 86b6c3e09ca..f56890daafa 100644 --- a/develop/group___h5_e.html +++ b/develop/group___h5_e.html @@ -37,7 +37,7 @@
        diff --git a/develop/group___h5_e_s.html b/develop/group___h5_e_s.html index 9c38c8eeca2..3f4fd5389d7 100644 --- a/develop/group___h5_e_s.html +++ b/develop/group___h5_e_s.html @@ -37,7 +37,7 @@ @@ -125,7 +125,7 @@ $(document).ready(function(){initNavTree('group___h5_e_s.html',''); initResizabl

        Detailed Description

        Event Set Interface.

        -
        Todo:
        Add the event set life cycle.
        +
        Todo:
        Add the event set life cycle.

        This interface can only be used with the HDF5 VOL connectors that enable the asynchronous feature in HDF5. The native HDF5 library has only synchronous operations.

        HDF5 VOL connectors with support for asynchronous operations:

        • ASYNC
        • diff --git a/develop/group___h5_f.html b/develop/group___h5_f.html index 47455af85d2..4f2772ec24f 100644 --- a/develop/group___h5_f.html +++ b/develop/group___h5_f.html @@ -37,7 +37,7 @@
        @@ -860,7 +860,7 @@ An additional flag, H5Fget_file_image() retrieves a copy of the image of an existing, open file. This routine can be used with files opened using the SEC2 (or POSIX), STDIO, and Core (or Memory) virtual file drivers (VFDs).

        If the return value of H5Fget_file_image() is a positive value, it will be the length in bytes of the buffer required to store the file image. So if the file size is unknown, it can be safely determined with an initial H5Fget_file_image() call with buf_ptr set to NULL. The file image can then be retrieved with a second H5Fget_file_image() call with buf_len set to the initial call's return value.

        While the current file size can also be retrieved with H5Fget_filesize(), that call may produce a larger value than is needed. The value returned by H5Fget_filesize() includes the user block, if it exists, and any unallocated space at the end of the file. It is safe in all situations to get the file size with H5Fget_file_image() and it often produces a value that is more appropriate for the size of a file image buffer.

        -
        Note
        Recommended Reading: This function is part of the file image operations feature set. It is highly recommended to study the guide HDF5 File Image Operations before using this feature set.
        +
        Note
        Recommended Reading: This function is part of the file image operations feature set. It is highly recommended to study the guide HDF5 File Image Operations before using this feature set.
        Attention
        H5Pget_file_image() will fail, returning a negative value, if the file is too large for the supplied buffer.
        See also
        H5LTopen_file_image(), H5Pset_file_image(), H5Pget_file_image(), H5Pset_file_image_callbacks(), H5Pget_file_image_callbacks()
        Since
        1.8.0
        diff --git a/develop/group___h5_g.html b/develop/group___h5_g.html index e6206b2ce36..fb53fb162ba 100644 --- a/develop/group___h5_g.html +++ b/develop/group___h5_g.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_i.html b/develop/group___h5_i.html index bd25655817b..3265e9f4499 100644 --- a/develop/group___h5_i.html +++ b/develop/group___h5_i.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_i_m.html b/develop/group___h5_i_m.html index c01de02d631..1e401c0d8a2 100644 --- a/develop/group___h5_i_m.html +++ b/develop/group___h5_i_m.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_i_u_d.html b/develop/group___h5_i_u_d.html index 1639feff2b1..6ed5a75fbb7 100644 --- a/develop/group___h5_i_u_d.html +++ b/develop/group___h5_i_u_d.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_l.html b/develop/group___h5_l.html index e49dc6f78e1..8888b7250a0 100644 --- a/develop/group___h5_l.html +++ b/develop/group___h5_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_l_a.html b/develop/group___h5_l_a.html index ac5797583c1..a203210c81e 100644 --- a/develop/group___h5_l_a.html +++ b/develop/group___h5_l_a.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_l_r.html b/develop/group___h5_l_r.html index 95af73745c0..058c63dfda5 100644 --- a/develop/group___h5_l_r.html +++ b/develop/group___h5_l_r.html @@ -37,7 +37,7 @@ @@ -125,8 +125,8 @@ $(document).ready(function(){initNavTree('group___h5_l_r.html',''); initResizabl

        Detailed Description

        Working with region references, hyperslab selections, and bit-fields (H5LR, H5LT)

        -

        The following reference manual entries describe high-level HDF5 C and Fortran APIs for working with region references, hyperslab selections, and bit-fields. These functions were created as part of a project supporting NPP/NPOESS Data Production and Exploitation ( project, software ). While they were written to facilitate access to NPP, NPOESS, and JPSS data in the HDF5 format, these functions may be useful to anyone working with region references, hyperslab selections, or bit-fields.

        -

        Note that these functions are not part of the standard HDF5 distribution; the software must be separately downloaded and installed.

        +

        The following reference manual entries describe high-level HDF5 C and Fortran APIs for working with region references, hyperslab selections, and bit-fields. These functions were created as part of a project supporting NPP/NPOESS Data Production and Exploitation ( project, software ). While they were written to facilitate access to NPP, NPOESS, and JPSS data in the HDF5 format, these functions may be useful to anyone working with region references, hyperslab selections, or bit-fields.

        +

        Note that these functions are not part of the standard HDF5 distribution; the software must be separately downloaded and installed.

        A comprehensive guide to this library, User Guide to the HDF5 High-level Library for Handling Region References and Hyperslab Selections is available at https://support.hdfgroup.org/projects/jpss/documentation/HL/UG/NPOESS_HL-UG.pdf.

      • H5_ITER_DEC Decreasing order
      • H5_ITER_NATIVE Fastest available order
      • -

        For more detailed information on these two parameters,

        See also
        H5Lvisit().
        +

        For more detailed information on these two parameters, see H5Lvisit().

        ref_type specifies the type of the reference to be used. Valid values include the following:

        • H5R_DATASET_REGION Dataset region reference
        • H5R_OBJECT Object reference
        • diff --git a/develop/group___h5_l_t.html b/develop/group___h5_l_t.html index d758315b516..988838c074e 100644 --- a/develop/group___h5_l_t.html +++ b/develop/group___h5_l_t.html @@ -37,7 +37,7 @@
        @@ -794,7 +794,7 @@ Dataset Watch functions (used with h5watch):
          Returns
          Returns a non-negative value if successful; otherwise, returns a negative value.

          Given an HDF5 datatype identifier, this function creates a description of this datatype in lang_type language format. A preliminary H5LTdtype_to_text() call can be made to determine the size of the buffer needed with a NULL passed in for str. This value is returned as len. That value can then be assigned to len for a second H5Ttype_to_text() call, which will retrieve the actual text description for the datatype.

          If len is not big enough for the description, the text description will be truncated to fit in the buffer.

          -

          Currently only DDL (H5LT_DDL) is supported for lang_type. The complete DDL definition of HDF5 data types can be found in the last chapter of the HDF5 User's Guide.

          +

          Currently only DDL (H5LT_DDL) is supported for lang_type. The complete DDL definition of HDF5 data types can be found in the specifications chapter of the HDF5 User's Guide.

          Example
          An example of DDL definition of enum type is shown as follows.
          “H5T_ENUM
          {
          @@ -2469,9 +2469,9 @@ Dataset Watch functions (used with h5watch):
            Recommended Reading:
            -This function is part of the file image operations feature set. It is highly recommended to study the guide HDF5 File Image Operations before using this feature set.
            +This function is part of the file image operations feature set. It is highly recommended to study the guide HDF5 File Image Operations before using this feature set.
            See the “See Also” section below for links to other elements of HDF5 file image operations.
          -
          Todo:
          There is no "See Also" section???
          +
          Todo:
          There is no "See Also" section???
          Since
          1.8.9
          @@ -3762,7 +3762,7 @@ Upon error, returns a negative value.
          Returns
          Returns the datatype identifier(non-negative) if successful; otherwise returns a negative value.
          -

          Given a text description of a datatype, this function creates an HDF5 datatype and returns the datatype identifier. The text description of the datatype has to comply with the lang_type definition of HDF5 datatypes. Currently, only the DDL(H5LT_DDL) is supported. The complete DDL definition of HDF5 datatypes can be found in the last chapter of the HDF5 User's Guide.

          +

          Given a text description of a datatype, this function creates an HDF5 datatype and returns the datatype identifier. The text description of the datatype has to comply with the lang_type definition of HDF5 datatypes. Currently, only the DDL(H5LT_DDL) is supported. The complete DDL definition of HDF5 datatypes can be found in the specifications chapter of the HDF5 User's Guide.

          Example
          An example of DDL definition of enum type is shown as follows.
          “H5T_ENUM
          {
          diff --git a/develop/group___h5_m.html b/develop/group___h5_m.html index 9dd467d29eb..9a4b47c7052 100644 --- a/develop/group___h5_m.html +++ b/develop/group___h5_m.html @@ -37,7 +37,7 @@
        diff --git a/develop/group___h5_o.html b/develop/group___h5_o.html index 0630ddadd63..06b5f8a4e00 100644 --- a/develop/group___h5_o.html +++ b/develop/group___h5_o.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_p.html b/develop/group___h5_p.html index 9cfdcfc1644..42ee0cdea39 100644 --- a/develop/group___h5_p.html +++ b/develop/group___h5_p.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_p_l.html b/develop/group___h5_p_l.html index 2b318fcd604..42d8a142f30 100644 --- a/develop/group___h5_p_l.html +++ b/develop/group___h5_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_p_t.html b/develop/group___h5_p_t.html index 0868d5cc2b4..9459654722c 100644 --- a/develop/group___h5_p_t.html +++ b/develop/group___h5_p_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_r.html b/develop/group___h5_r.html index 615a1deaa2c..7819d166cdc 100644 --- a/develop/group___h5_r.html +++ b/develop/group___h5_r.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_s.html b/develop/group___h5_s.html index 8f3d19cd465..f9b29439b40 100644 --- a/develop/group___h5_s.html +++ b/develop/group___h5_s.html @@ -37,7 +37,7 @@ @@ -685,7 +685,7 @@ Functions

        If the library determines that nalloc is not big enough for the object, it simply returns the size of the buffer needed through nalloc without encoding the provided buffer.

        The file access property list fapl_id is used to control the encoding via the libver_bounds property (see H5Pset_libver_bounds()). If the libver_bounds property is missing, H5Sencode2() proceeds as if the libver_bounds property were set to (H5F_LIBVER_EARLIEST, H5F_LIBVER_LATEST). (Functionally, H5Sencode1() is identical to H5Sencode2() with libver_bounds set to (H5F_LIBVER_EARLIEST, H5F_LIBVER_LATEST).)

        The types of data space that are addressed in this function are null, scalar, and simple space. For a simple data space, the information on the selection, for example, hyperslab selection, is also encoded and decoded. A complex data space has not been implemented in the library.

        -
        Note
        Motivation: This function was introduced in HDF5-1.12 as part of the H5Sencode() format change to enable 64-bit selection encodings and a dataspace selection that is tied to a file. See the New Features in HDF5 Release 1.12 as well as the RFC H5Sencode() / H5Sdecode() Format Change.
        +
        Note
        Motivation: This function was introduced in HDF5-1.12 as part of the H5Sencode() format change to enable 64-bit selection encodings and a dataspace selection that is tied to a file. See the New Features in HDF5 Release 1.12 as well as the RFC H5Sencode() / H5Sdecode() Format Change.
        Since
        1.12.0
        diff --git a/develop/group___h5_t.html b/develop/group___h5_t.html index 094b9f40c4f..850a6198369 100644 --- a/develop/group___h5_t.html +++ b/develop/group___h5_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_t_b.html b/develop/group___h5_t_b.html index 9995307523e..3c5a8f6bf50 100644 --- a/develop/group___h5_t_b.html +++ b/develop/group___h5_t_b.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_v_l.html b/develop/group___h5_v_l.html index 0028aa70195..e172bcd2245 100644 --- a/develop/group___h5_v_l.html +++ b/develop/group___h5_v_l.html @@ -37,7 +37,7 @@ @@ -125,7 +125,7 @@ $(document).ready(function(){initNavTree('group___h5_v_l.html',''); initResizabl

        Detailed Description

        -
        Todo:
        Describe the VOL plugin life cycle.
        +
        Todo:
        Describe the VOL plugin life cycle.

        Macros

        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
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        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/group___h5_v_l_d_e_f.html b/develop/group___h5_v_l_d_e_f.html index e7b21caebac..dc86d3c010f 100644 --- a/develop/group___h5_v_l_d_e_f.html +++ b/develop/group___h5_v_l_d_e_f.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_v_l_d_e_v.html b/develop/group___h5_v_l_d_e_v.html index 0b59c326807..6aa627c0da6 100644 --- a/develop/group___h5_v_l_d_e_v.html +++ b/develop/group___h5_v_l_d_e_v.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_v_l_n_a_t.html b/develop/group___h5_v_l_n_a_t.html index d5d95748f7e..c0b547e78d1 100644 --- a/develop/group___h5_v_l_n_a_t.html +++ b/develop/group___h5_v_l_n_a_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_v_l_p_t.html b/develop/group___h5_v_l_p_t.html index 7182af9d132..887c782a2bd 100644 --- a/develop/group___h5_v_l_p_t.html +++ b/develop/group___h5_v_l_p_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_z.html b/develop/group___h5_z.html index aed961c2797..038004c5f67 100644 --- a/develop/group___h5_z.html +++ b/develop/group___h5_z.html @@ -37,7 +37,7 @@ diff --git a/develop/group___h5_z_p_r_e.html b/develop/group___h5_z_p_r_e.html index 7919ef6cc95..c5eaac37e65 100644 --- a/develop/group___h5_z_p_r_e.html +++ b/develop/group___h5_z_p_r_e.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_e_r_r.html b/develop/group___j_e_r_r.html index ebe13088aa3..94b94ca03c7 100644 --- a/develop/group___j_e_r_r.html +++ b/develop/group___j_e_r_r.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_e_r_r_j_a_v_a.html b/develop/group___j_e_r_r_j_a_v_a.html index 4e4eb0978d4..ad5a1865207 100644 --- a/develop/group___j_e_r_r_j_a_v_a.html +++ b/develop/group___j_e_r_r_j_a_v_a.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_e_r_r_l_i_b.html b/develop/group___j_e_r_r_l_i_b.html index 4f54cd36519..37d910b63b2 100644 --- a/develop/group___j_e_r_r_l_i_b.html +++ b/develop/group___j_e_r_r_l_i_b.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5.html b/develop/group___j_h5.html index 274a89d2e82..7ff91588e34 100644 --- a/develop/group___j_h5.html +++ b/develop/group___j_h5.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_a.html b/develop/group___j_h5_a.html index 45b4c580957..d498da7574b 100644 --- a/develop/group___j_h5_a.html +++ b/develop/group___j_h5_a.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_d.html b/develop/group___j_h5_d.html index d699f2bd0f5..5086ed8d2f3 100644 --- a/develop/group___j_h5_d.html +++ b/develop/group___j_h5_d.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_e.html b/develop/group___j_h5_e.html index a15032974b9..1cea263ed54 100644 --- a/develop/group___j_h5_e.html +++ b/develop/group___j_h5_e.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_e_s.html b/develop/group___j_h5_e_s.html index 13ac73690ca..b596affbbd3 100644 --- a/develop/group___j_h5_e_s.html +++ b/develop/group___j_h5_e_s.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_f.html b/develop/group___j_h5_f.html index 786d36e9233..e8b6207dfbb 100644 --- a/develop/group___j_h5_f.html +++ b/develop/group___j_h5_f.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_g.html b/develop/group___j_h5_g.html index 4a964958bdb..2b4265659df 100644 --- a/develop/group___j_h5_g.html +++ b/develop/group___j_h5_g.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_i.html b/develop/group___j_h5_i.html index f8ab05cb2b8..1980159c725 100644 --- a/develop/group___j_h5_i.html +++ b/develop/group___j_h5_i.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_l.html b/develop/group___j_h5_l.html index 955b3e6f19d..56719638106 100644 --- a/develop/group___j_h5_l.html +++ b/develop/group___j_h5_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_o.html b/develop/group___j_h5_o.html index fe423dfa2f6..bfaea9a37b3 100644 --- a/develop/group___j_h5_o.html +++ b/develop/group___j_h5_o.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_p.html b/develop/group___j_h5_p.html index d5237b03fa7..d199d751ca3 100644 --- a/develop/group___j_h5_p.html +++ b/develop/group___j_h5_p.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_p_l.html b/develop/group___j_h5_p_l.html index 564bf959560..69d924ab1c6 100644 --- a/develop/group___j_h5_p_l.html +++ b/develop/group___j_h5_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_r.html b/develop/group___j_h5_r.html index 966f6356d25..aa9a7d00649 100644 --- a/develop/group___j_h5_r.html +++ b/develop/group___j_h5_r.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_s.html b/develop/group___j_h5_s.html index 9b88f03dbe4..15ceae06af9 100644 --- a/develop/group___j_h5_s.html +++ b/develop/group___j_h5_s.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_t.html b/develop/group___j_h5_t.html index 184fc7e102b..11fa93e2f27 100644 --- a/develop/group___j_h5_t.html +++ b/develop/group___j_h5_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_v_l.html b/develop/group___j_h5_v_l.html index 7c7408f3d1f..76a967dfb2e 100644 --- a/develop/group___j_h5_v_l.html +++ b/develop/group___j_h5_v_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___j_h5_z.html b/develop/group___j_h5_z.html index 9b8164de523..1236b91bd82 100644 --- a/develop/group___j_h5_z.html +++ b/develop/group___j_h5_z.html @@ -37,7 +37,7 @@ diff --git a/develop/group___l_a_p_l.html b/develop/group___l_a_p_l.html index 3d45891b658..1217a12b18f 100644 --- a/develop/group___l_a_p_l.html +++ b/develop/group___l_a_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___l_c_p_l.html b/develop/group___l_c_p_l.html index 5ea966d7031..ca05f7a78f2 100644 --- a/develop/group___l_c_p_l.html +++ b/develop/group___l_c_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___m_d_c.html b/develop/group___m_d_c.html index fbe92a9b15b..12e3144244b 100644 --- a/develop/group___m_d_c.html +++ b/develop/group___m_d_c.html @@ -37,7 +37,7 @@ @@ -409,7 +409,7 @@ Functions

        The metadata cache is a central part of the HDF5 library through which all file metadata reads and writes take place. File metadata is normally invisible to the user and is used by the library for purposes such as locating and indexing data. File metadata should not be confused with user metadata, which consists of attributes created by users and attached to HDF5 objects such as datasets via H5A API calls.

        Due to the complexity of the cache, a trace/logging feature has been created that can be used by HDF5 developers for debugging and performance analysis. The functions that control this functionality will normally be of use to a very limited number of developers outside of The HDF Group. The functions have been documented to help users create logs that can be sent with bug reports.

        Control of the log functionality is straightforward. Logging is enabled via the H5Pset_mdc_log_options() function, which will modify the file access property list used to open or create a file. This function has a flag that determines whether logging begins at file open or starts in a paused state. Log messages can then be controlled via the H5Fstart_mdc_logging() and H5Fstop_mdc_logging() functions. H5Pget_mdc_log_options() can be used to examine a file access property list, and H5Fget_mdc_logging_status() will return the current state of the logging flags.

        -

        The log format is described in the Metadata Cache Logging document.

        +

        The log format is described in the Metadata Cache Logging document.

        Note
        Unlike H5Fstart_mdc_logging() and H5Fstop_mdc_logging(), this function can be called on any open file identifier.
        Since
        1.10.0
        @@ -506,7 +506,7 @@ Functions

        H5Freset_mdc_hit_rate_stats() resets the hit rate statistics counters in the metadata cache associated with the specified file.

        If the adaptive cache resizing code is enabled, the hit rate statistics are reset at the beginning of each epoch. This API call allows you to do the same thing from your program.

        The adaptive cache resizing code may behave oddly if you use this call when adaptive cache resizing is enabled. However, the call should be useful if you choose to control metadata cache size from your program.

        -

        See Metadata Caching in HDF5 for details about the metadata cache and the adaptive cache resizing algorithms. If you have not read, understood, and thought about the material covered in that documentation, you should not be using this API call.

        +

        See Metadata Caching in HDF5 for details about the metadata cache and the adaptive cache resizing algorithms. If you have not read, understood, and thought about the material covered in that documentation, you should not be using this API call.

        Since
        1.8.0
        @@ -617,7 +617,7 @@ Functions

        The metadata cache is a central part of the HDF5 library through which all file metadata reads and writes take place. File metadata is normally invisible to the user and is used by the library for purposes such as locating and indexing data. File metadata should not be confused with user metadata, which consists of attributes created by users and attached to HDF5 objects such as datasets via H5A API calls.

        Due to the complexity of the cache, a trace/logging feature has been created that can be used by HDF5 developers for debugging and performance analysis. The functions that control this functionality will normally be of use to a very limited number of developers outside of The HDF Group. The functions have been documented to help users create logs that can be sent with bug reports.

        Control of the log functionality is straightforward. Logging is enabled via the H5Pset_mdc_log_options() function, which will modify the file access property list used to open or create a file. This function has a flag that determines whether logging begins at file open or starts in a paused state. Log messages can then be controlled via the H5Fstart_mdc_logging() and H5Fstop_mdc_logging() functions. H5Pget_mdc_log_options() can be used to examine a file access property list, and H5Fget_mdc_logging_status() will return the current state of the logging flags.

        -

        The log format is described in the Metadata Cache Logging document.

        +

        The log format is described in the Metadata Cache Logging document.

        Note
        Logging can only be started or stopped if metadata cache logging was enabled via H5Pset_mdc_log_options().
        When enabled and currently logging, the overhead of the logging feature will almost certainly be significant.
        The log file is opened when the HDF5 file is opened or created and not when this function is called for the first time.
        @@ -653,7 +653,7 @@ Functions

        The metadata cache is a central part of the HDF5 library through which all file metadata reads and writes take place. File metadata is normally invisible to the user and is used by the library for purposes such as locating and indexing data. File metadata should not be confused with user metadata, which consists of attributes created by users and attached to HDF5 objects such as datasets via H5A API calls.

        Due to the complexity of the cache, a trace/logging feature has been created that can be used by HDF5 developers for debugging and performance analysis. The functions that control this functionality will normally be of use to a very limited number of developers outside of The HDF Group. The functions have been documented to help users create logs that can be sent with bug reports.

        Control of the log functionality is straightforward. Logging is enabled via the H5Pset_mdc_log_options() function, which will modify the file access property list used to open or create a file. This function has a flag that determines whether logging begins at file open or starts in a paused state. Log messages can then be controlled via the H5Fstart_mdc_logging() and H5Fstop_mdc_logging() functions. H5Pget_mdc_log_options() can be used to examine a file access property list, and H5Fget_mdc_logging_status() will return the current state of the logging flags.

        -

        The log format is described in the Metadata Cache Logging document.

        +

        The log format is described in the Metadata Cache Logging document.

        Note
        Logging can only be started or stopped if metadata cache logging was enabled via H5Pset_mdc_log_options().
        This function only suspends the logging operations. The log file will remain open and will not be closed until the HDF5 file is closed.
        Since
        1.10.0
        diff --git a/develop/group___o_c_p_l.html b/develop/group___o_c_p_l.html index e33bc855119..3158ed27ed9 100644 --- a/develop/group___o_c_p_l.html +++ b/develop/group___o_c_p_l.html @@ -37,7 +37,7 @@
        @@ -935,7 +935,7 @@ The following table summarizes optional filter behavior.

        Modules

        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        The above principles apply generally in the use of HDF5 optional filters insofar as HDF5 does as much as possible to complete an operation when an optional filter is unavailable. (The SZIP filter is an exception to this rule; see H5Pset_szip() for details.)
        -
        See also
        Data Flow Pipeline for H5Dread(), Group implementations in HDF5
        +
        See also
        Data Flow Pipeline for H5Dread(), Group implementations in HDF5
        Version
        1.8.5 Function applied to group creation property lists.
        Since
        1.6.0
        diff --git a/develop/group___o_c_p_y_p_l.html b/develop/group___o_c_p_y_p_l.html index 901d3c320ec..e89efbacd84 100644 --- a/develop/group___o_c_p_y_p_l.html +++ b/develop/group___o_c_p_y_p_l.html @@ -37,7 +37,7 @@ @@ -237,7 +237,7 @@ Then, if no match has been found, search all the committed datatypes in the dest
      • H5Pget_mcdt_search_cb()
      • H5Pset_copy_object()
      • H5Pset_mcdt_search_cb()
      • -
      • Copying Committed Datatypes with H5Ocopy()
      • +
      • Copying Committed Datatypes with H5Ocopy()
      • Since
        1.8.9
        @@ -395,7 +395,7 @@ Then, if no match has been found, search all the committed datatypes in the dest
      • H5Pget_mcdt_search_cb()
      • H5Pset_copy_object()
      • H5Pset_mcdt_search_cb()
      • -
      • Copying Committed Datatypes with H5Ocopy()
      • +
      • Copying Committed Datatypes with H5Ocopy()
      • Since
        1.8.9
        @@ -472,7 +472,7 @@ Then, if no match has been found, search all the committed datatypes in the dest
      • H5Pget_mcdt_search_cb()
      • H5Pset_copy_object()
      • H5Pset_mcdt_search_cb()
      • -
      • Copying Committed Datatypes with H5Ocopy()
      • +
      • Copying Committed Datatypes with H5Ocopy()
      • Version
        1.8.9 H5O_COPY_MERGE_COMMITTED_DTYPE_FLAG added in this release.
        @@ -562,7 +562,7 @@ mcdt_search_cb(void *_udata)
      • H5Pget_mcdt_search_cb()
      • H5Pset_copy_object()
      • H5Pset_mcdt_search_cb()
      • -
      • Copying Committed Datatypes with H5Ocopy()
      • +
      • Copying Committed Datatypes with H5Ocopy()
      • Since
        1.8.9
        diff --git a/develop/group___o_p_a_q_u_e.html b/develop/group___o_p_a_q_u_e.html index bcb65c1561b..e8ddf0fe8e6 100644 --- a/develop/group___o_p_a_q_u_e.html +++ b/develop/group___o_p_a_q_u_e.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t.html b/develop/group___p_d_t.html index 4fcdbddc164..b1d58636c16 100644 --- a/develop/group___p_d_t.html +++ b/develop/group___p_d_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_a_l_p_h_a.html b/develop/group___p_d_t_a_l_p_h_a.html index 01ae63b5c5e..0d3caf58270 100644 --- a/develop/group___p_d_t_a_l_p_h_a.html +++ b/develop/group___p_d_t_a_l_p_h_a.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_c9x.html b/develop/group___p_d_t_c9x.html index 19387de7414..b6de61a7070 100644 --- a/develop/group___p_d_t_c9x.html +++ b/develop/group___p_d_t_c9x.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_c_p_u.html b/develop/group___p_d_t_c_p_u.html index b9ac7846d7a..00b459a3d91 100644 --- a/develop/group___p_d_t_c_p_u.html +++ b/develop/group___p_d_t_c_p_u.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_i_e_e_e.html b/develop/group___p_d_t_i_e_e_e.html index 1b0f07391c6..d878accbd47 100644 --- a/develop/group___p_d_t_i_e_e_e.html +++ b/develop/group___p_d_t_i_e_e_e.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_m_i_p_s.html b/develop/group___p_d_t_m_i_p_s.html index 5b92e82db3f..209698e446c 100644 --- a/develop/group___p_d_t_m_i_p_s.html +++ b/develop/group___p_d_t_m_i_p_s.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_n_a_t.html b/develop/group___p_d_t_n_a_t.html index 233a60548b2..a047178e673 100644 --- a/develop/group___p_d_t_n_a_t.html +++ b/develop/group___p_d_t_n_a_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_s.html b/develop/group___p_d_t_s.html index 28b1e64fc9f..17b43f00cab 100644 --- a/develop/group___p_d_t_s.html +++ b/develop/group___p_d_t_s.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_s_t_d.html b/develop/group___p_d_t_s_t_d.html index d9945bdbeb1..91b0e82e021 100644 --- a/develop/group___p_d_t_s_t_d.html +++ b/develop/group___p_d_t_s_t_d.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_u_n_i_x.html b/develop/group___p_d_t_u_n_i_x.html index 2a0a999598d..6c7f467191c 100644 --- a/develop/group___p_d_t_u_n_i_x.html +++ b/develop/group___p_d_t_u_n_i_x.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_d_t_x86.html b/develop/group___p_d_t_x86.html index 3ab80fe98ce..bbabcd47aba 100644 --- a/develop/group___p_d_t_x86.html +++ b/develop/group___p_d_t_x86.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_h5_f.html b/develop/group___p_h5_f.html index fdb44623a7a..f893c1db09f 100644 --- a/develop/group___p_h5_f.html +++ b/develop/group___p_h5_f.html @@ -37,7 +37,7 @@ @@ -176,7 +176,7 @@ Functions
        Returns
        Returns a non-negative value if successful; otherwise, returns a negative value.

        H5Fget_mpi_atomicity() retrieves the current consistency semantics mode for data access for the file file_id.

        Upon successful return, flag will be set to 1 if file access is set to atomic mode and 0 if file access is set to nonatomic mode.

        -
        See also
        Enabling a Strict Consistency Semantics Model in Parallel HDF5
        +
        See also
        Enabling a Strict Consistency Semantics Model in Parallel HDF5
        Since
        1.8.9
        @@ -233,7 +233,7 @@ Functions

        This issue arises because MPI atomicity is a matter of MPI file access operations rather than HDF5 access operations. But the user is normally seeking atomicity at the HDF5 level. To accomplish this, the application must set a barrier after a write, H5Dwrite(), but before the next read, H5Dread(), in addition to calling H5Fset_mpi_atomicity().The barrier will guarantee that all underlying write operations execute atomically before the read operations starts. This ensures additional ordering semantics and will normally produce the desired behavior.

        -
        See also
        Enabling a Strict Consistency Semantics Model in Parallel HDF5
        +
        See also
        Enabling a Strict Consistency Semantics Model in Parallel HDF5
        Since
        1.8.9
        diff --git a/develop/group___p_l_c_r.html b/develop/group___p_l_c_r.html index 322e58e8406..ad9f9e423b2 100644 --- a/develop/group___p_l_c_r.html +++ b/develop/group___p_l_c_r.html @@ -37,7 +37,7 @@ diff --git a/develop/group___p_l_c_r_a.html b/develop/group___p_l_c_r_a.html index 7eae562ecc1..666df0f0a07 100644 --- a/develop/group___p_l_c_r_a.html +++ b/develop/group___p_l_c_r_a.html @@ -37,7 +37,7 @@ diff --git a/develop/group___s_c_a_l_e_o_f_f_s_e_t.html b/develop/group___s_c_a_l_e_o_f_f_s_e_t.html index e0ef3b222f7..8f42f198b50 100644 --- a/develop/group___s_c_a_l_e_o_f_f_s_e_t.html +++ b/develop/group___s_c_a_l_e_o_f_f_s_e_t.html @@ -37,7 +37,7 @@ diff --git a/develop/group___s_h_u_f_f_l_e.html b/develop/group___s_h_u_f_f_l_e.html index 2ac46f3e7b8..c27c9af5303 100644 --- a/develop/group___s_h_u_f_f_l_e.html +++ b/develop/group___s_h_u_f_f_l_e.html @@ -37,7 +37,7 @@ diff --git a/develop/group___s_t_r_c_p_l.html b/develop/group___s_t_r_c_p_l.html index fca0e4c9c93..938eb63e846 100644 --- a/develop/group___s_t_r_c_p_l.html +++ b/develop/group___s_t_r_c_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___s_w_m_r.html b/develop/group___s_w_m_r.html index e1899cde5eb..44c59094200 100644 --- a/develop/group___s_w_m_r.html +++ b/develop/group___s_w_m_r.html @@ -37,7 +37,7 @@ diff --git a/develop/group___s_z_i_p.html b/develop/group___s_z_i_p.html index edeb46b8248..195eabbd756 100644 --- a/develop/group___s_z_i_p.html +++ b/develop/group___s_z_i_p.html @@ -37,7 +37,7 @@ diff --git a/develop/group___t_a_p_l.html b/develop/group___t_a_p_l.html index f95fdaacc68..222b13f5eea 100644 --- a/develop/group___t_a_p_l.html +++ b/develop/group___t_a_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___t_c_p_l.html b/develop/group___t_c_p_l.html index 2b2a295ecb8..553c5f28d55 100644 --- a/develop/group___t_c_p_l.html +++ b/develop/group___t_c_p_l.html @@ -37,7 +37,7 @@ diff --git a/develop/group___t_r_a_v.html b/develop/group___t_r_a_v.html index 3906adf7e44..93ee5b5a020 100644 --- a/develop/group___t_r_a_v.html +++ b/develop/group___t_r_a_v.html @@ -37,7 +37,7 @@ diff --git a/develop/group___v_l_e_n.html b/develop/group___v_l_e_n.html index b325f2d470c..8df709737f2 100644 --- a/develop/group___v_l_e_n.html +++ b/develop/group___v_l_e_n.html @@ -37,7 +37,7 @@ diff --git a/develop/h5clear_8h.html b/develop/h5clear_8h.html index 622b010a522..33b9e9b30a1 100644 --- a/develop/h5clear_8h.html +++ b/develop/h5clear_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5copy_8h.html b/develop/h5copy_8h.html index 4a01699cda5..23be70ba781 100644 --- a/develop/h5copy_8h.html +++ b/develop/h5copy_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5debug_8h.html b/develop/h5debug_8h.html index 7f9e4b57f55..6094d58571f 100644 --- a/develop/h5debug_8h.html +++ b/develop/h5debug_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5delete_8h.html b/develop/h5delete_8h.html index b563c9c1e85..5b78a028b97 100644 --- a/develop/h5delete_8h.html +++ b/develop/h5delete_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5diff__main_8h.html b/develop/h5diff__main_8h.html index d146b00e8c5..3794132277c 100644 --- a/develop/h5diff__main_8h.html +++ b/develop/h5diff__main_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5dump_8h.html b/develop/h5dump_8h.html index 968d9e54a03..e66ccc1efd6 100644 --- a/develop/h5dump_8h.html +++ b/develop/h5dump_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5format__convert_8h.html b/develop/h5format__convert_8h.html index 01bc8ae2ae0..b83eb18944a 100644 --- a/develop/h5format__convert_8h.html +++ b/develop/h5format__convert_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5import_8h.html b/develop/h5import_8h.html index 6c73a4af107..d4c0ba6bd45 100644 --- a/develop/h5import_8h.html +++ b/develop/h5import_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5jam_8h.html b/develop/h5jam_8h.html index 10f4219cb7c..fd7e2cc170c 100644 --- a/develop/h5jam_8h.html +++ b/develop/h5jam_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5ls_8h.html b/develop/h5ls_8h.html index 2c6cb881ae7..0260daefc49 100644 --- a/develop/h5ls_8h.html +++ b/develop/h5ls_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5mkgrp_8h.html b/develop/h5mkgrp_8h.html index ecba20420b6..7939d198b93 100644 --- a/develop/h5mkgrp_8h.html +++ b/develop/h5mkgrp_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5repack_8h.html b/develop/h5repack_8h.html index 6c95cba8835..c033b9ae80c 100644 --- a/develop/h5repack_8h.html +++ b/develop/h5repack_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5repart_8h.html b/develop/h5repart_8h.html index e16aac59a42..2e6a63287f1 100644 --- a/develop/h5repart_8h.html +++ b/develop/h5repart_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5stat_8h.html b/develop/h5stat_8h.html index e6217e034bb..ba18e5dd710 100644 --- a/develop/h5stat_8h.html +++ b/develop/h5stat_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/h5watch_8h.html b/develop/h5watch_8h.html index 6236916452c..d97439350fc 100644 --- a/develop/h5watch_8h.html +++ b/develop/h5watch_8h.html @@ -37,7 +37,7 @@ diff --git a/develop/high__level__menu_8md.html b/develop/high__level__menu_8md.html index 97e1666d2f8..a0200e4116d 100644 --- a/develop/high__level__menu_8md.html +++ b/develop/high__level__menu_8md.html @@ -37,7 +37,7 @@ diff --git a/develop/images__to__copy_8dox.html b/develop/images__to__copy_8dox.html index c1d294a7ab1..062a2cf8ac0 100644 --- a/develop/images__to__copy_8dox.html +++ b/develop/images__to__copy_8dox.html @@ -37,7 +37,7 @@ diff --git a/develop/index.html b/develop/index.html index 81593dd97d6..4b3f4ccc7e7 100644 --- a/develop/index.html +++ b/develop/index.html @@ -37,7 +37,7 @@ @@ -119,9 +119,9 @@ $(document).ready(function(){initNavTree('index.html',''); initResizable(); });

        This is the documentation set for HDF5. It includes specifications and documentation of software and tools developed and maintained by The HDF Group. It is impractical to document the entire HDF5 ecosystem in one place, and you should also consult the documentation sets of the many outstanding community projects.

        -

        For a first contact with HDF5, the best place is to have a look at the getting started page that shows you how to write and compile your first program with HDF5.

        -

        The main documentation is organized by documentation flavor. Most technical documentation consists to varying degrees of information related to tasks, concepts, or reference material. As its title suggests, the Reference Manual is 100% reference material, while the Cookbook is focused on tasks. The different guide-type documents cover a mix of tasks, concepts, and reference, to help a specific audience succeed.

        -
        Offline reading
        You can download it as an archive for offline reading.
        +

        For a first contact with HDF5, the best place is to have a look at the getting started page that shows you how to write and compile your first program with HDF5.

        +

        The main documentation is organized by documentation flavor. Most technical documentation consists to varying degrees of information related to tasks, concepts, or reference material. As its title suggests, the Reference Manual is 100% reference material, while the Cookbook is focused on tasks. The different guide-type documents cover a mix of tasks, concepts, and reference, to help a specific audience succeed.

        +
        Offline reading
        You can download it as an archive for offline reading.
        ToDo List
        There is plenty of unfinished business.
        diff --git a/develop/interfaceh5d_1_1h5dextend__f.html b/develop/interfaceh5d_1_1h5dextend__f.html index 6001d284cad..096bf737ebc 100644 --- a/develop/interfaceh5d_1_1h5dextend__f.html +++ b/develop/interfaceh5d_1_1h5dextend__f.html @@ -37,7 +37,7 @@ diff --git a/develop/interfaceh5e_1_1h5eprint__c.html b/develop/interfaceh5e_1_1h5eprint__c.html index e7c2f04c794..8ffdd8edf0e 100644 --- a/develop/interfaceh5e_1_1h5eprint__c.html +++ b/develop/interfaceh5e_1_1h5eprint__c.html @@ -37,7 +37,7 @@ diff --git a/develop/interfaceh5e_1_1h5eprint__f.html b/develop/interfaceh5e_1_1h5eprint__f.html index b3b8237baa5..d717c2c892e 100644 --- a/develop/interfaceh5e_1_1h5eprint__f.html +++ b/develop/interfaceh5e_1_1h5eprint__f.html @@ -37,7 +37,7 @@ diff --git a/develop/interfaceh5o_1_1h5oget__info__by__name__c.html b/develop/interfaceh5o_1_1h5oget__info__by__name__c.html index af50c7933a4..4f55d56d960 100644 --- a/develop/interfaceh5o_1_1h5oget__info__by__name__c.html +++ b/develop/interfaceh5o_1_1h5oget__info__by__name__c.html @@ -37,7 +37,7 @@ diff --git a/develop/interfaceh5p_1_1h5pget__fapl__mpio__f.html b/develop/interfaceh5p_1_1h5pget__fapl__mpio__f.html index 5ff2d08a39b..b39ce532714 100644 --- a/develop/interfaceh5p_1_1h5pget__fapl__mpio__f.html +++ b/develop/interfaceh5p_1_1h5pget__fapl__mpio__f.html @@ -37,7 +37,7 @@ diff --git a/develop/interfaceh5p_1_1h5pget__mpi__params__f.html b/develop/interfaceh5p_1_1h5pget__mpi__params__f.html index bd6e94dc687..e7f8ba3c6c1 100644 --- a/develop/interfaceh5p_1_1h5pget__mpi__params__f.html +++ b/develop/interfaceh5p_1_1h5pget__mpi__params__f.html @@ -37,7 +37,7 @@ diff --git a/develop/interfaceh5p_1_1h5pset__fapl__mpio__f.html b/develop/interfaceh5p_1_1h5pset__fapl__mpio__f.html index 53d35dec892..e01f89f8336 100644 --- a/develop/interfaceh5p_1_1h5pset__fapl__mpio__f.html +++ b/develop/interfaceh5p_1_1h5pset__fapl__mpio__f.html @@ -37,7 +37,7 @@ diff --git 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5a7625764bc..fb992285894 100644 --- a/develop/interfaceh5tb_1_1h5tbread__field__index__f.html +++ b/develop/interfaceh5tb_1_1h5tbread__field__index__f.html @@ -37,7 +37,7 @@ diff --git a/develop/interfaceh5tb_1_1h5tbread__field__name__f.html b/develop/interfaceh5tb_1_1h5tbread__field__name__f.html index fab96fb2e63..6af49be79b5 100644 --- a/develop/interfaceh5tb_1_1h5tbread__field__name__f.html +++ b/develop/interfaceh5tb_1_1h5tbread__field__name__f.html @@ -37,7 +37,7 @@ diff --git a/develop/interfaceh5tb_1_1h5tbwrite__field__index__f.html b/develop/interfaceh5tb_1_1h5tbwrite__field__index__f.html index 5d09107bb3a..b608f84f7a9 100644 --- a/develop/interfaceh5tb_1_1h5tbwrite__field__index__f.html +++ b/develop/interfaceh5tb_1_1h5tbwrite__field__index__f.html @@ -37,7 +37,7 @@ diff --git a/develop/interfaceh5tb_1_1h5tbwrite__field__name__f.html b/develop/interfaceh5tb_1_1h5tbwrite__field__name__f.html index 6f1488d87b5..a2ee28f65fa 100644 --- a/develop/interfaceh5tb_1_1h5tbwrite__field__name__f.html +++ b/develop/interfaceh5tb_1_1h5tbwrite__field__name__f.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_a__iterate__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_a__iterate__cb.html index 6e8f2eaac87..0c3d92e852e 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_a__iterate__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_a__iterate__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_a__iterate__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_a__iterate__t.html index 1b5fcd86b41..3985a33b01e 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_a__iterate__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_a__iterate__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__append__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__append__cb.html index c21cc2c8a7e..1c54a59c73b 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__append__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__append__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__append__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__append__t.html index 3f8ed8d0ccc..f57ca57bb47 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__append__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__append__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__iterate__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__iterate__cb.html index fc14e3181d5..cbedf431dcb 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__iterate__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__iterate__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__iterate__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__iterate__t.html index 840d27a808a..6fd5549af0c 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__iterate__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_d__iterate__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_e__walk__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_e__walk__cb.html index 1a49455f613..76fb051d5f2 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_e__walk__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_e__walk__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_e__walk__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_e__walk__t.html index 94b25e00fef..c1179fe63a8 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_e__walk__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_e__walk__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_l__iterate__opdata__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_l__iterate__opdata__t.html index 09195ee35a4..6ef6c43a288 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_l__iterate__opdata__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_l__iterate__opdata__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_l__iterate__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_l__iterate__t.html index 98069b7f5f1..0484bbbf588 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_l__iterate__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_l__iterate__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_o__iterate__opdata__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_o__iterate__opdata__t.html index 77a366e72fa..d04e839df06 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_o__iterate__opdata__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_o__iterate__opdata__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_o__iterate__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_o__iterate__t.html index 70bff168fee..d19e23c7e42 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_o__iterate__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_o__iterate__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__close__func__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__close__func__cb.html index 3e1804fa047..819bd4ed615 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__close__func__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__close__func__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__close__func__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__close__func__t.html index ef2f55e221b..b6f871fe083 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__close__func__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__close__func__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__copy__func__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__copy__func__cb.html index 8dc275e53fe..8eee235985c 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__copy__func__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__copy__func__cb.html @@ -37,7 +37,7 @@ diff 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c307e003c00..7834fe5ff9e 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__create__func__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__cls__create__func__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__iterate__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__iterate__cb.html index e0a451928ee..d38bd9bb3d3 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__iterate__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__iterate__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__iterate__t.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__iterate__t.html index 790b06dcbc7..364d9571c64 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__iterate__t.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__iterate__t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__close__func__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__close__func__cb.html index 7e2fd7e857c..d7468ef5410 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__close__func__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__close__func__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__compare__func__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__compare__func__cb.html index 1b1313327be..e8b57aba7cd 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__compare__func__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__compare__func__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__copy__func__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__copy__func__cb.html index 7925ba3e325..4c22ab99ecd 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__copy__func__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__copy__func__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__create__func__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__create__func__cb.html index e4005237719..d514631f705 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__create__func__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__create__func__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__delete__func__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__delete__func__cb.html index ed71c21a67a..1cefe54329d 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__delete__func__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__delete__func__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__get__func__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__get__func__cb.html index dc1d02ebe9c..9250c457178 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__get__func__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__get__func__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__set__func__cb.html b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__set__func__cb.html index 89d16a3e413..a04673989d1 100644 --- a/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__set__func__cb.html +++ b/develop/interfacehdf_1_1hdf5lib_1_1callbacks_1_1_h5_p__prp__set__func__cb.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacel__type__mod_1_1h5t.html b/develop/interfacel__type__mod_1_1h5t.html index 1226b9212e1..ef79f6e08d4 100644 --- a/develop/interfacel__type__mod_1_1h5t.html +++ b/develop/interfacel__type__mod_1_1h5t.html @@ -37,7 +37,7 @@ diff --git a/develop/interfacetype__mod_1_1h5t.html b/develop/interfacetype__mod_1_1h5t.html index bc12287c911..c902705e16d 100644 --- a/develop/interfacetype__mod_1_1h5t.html +++ b/develop/interfacetype__mod_1_1h5t.html @@ -37,7 +37,7 @@ diff --git a/develop/java__menu_8md.html b/develop/java__menu_8md.html index 7a56af3aea6..7c7f81d67c3 100644 --- a/develop/java__menu_8md.html +++ b/develop/java__menu_8md.html @@ -37,7 +37,7 @@ diff --git a/develop/library-init-shutdown_8md.html b/develop/library-init-shutdown_8md.html index 38b01ad3175..13e7c703b24 100644 --- a/develop/library-init-shutdown_8md.html +++ b/develop/library-init-shutdown_8md.html @@ -37,7 +37,7 @@ diff --git a/develop/maybe__metadata__reads_8dox.html b/develop/maybe__metadata__reads_8dox.html index 87c3db79bad..74bc6263d5f 100644 --- a/develop/maybe__metadata__reads_8dox.html +++ b/develop/maybe__metadata__reads_8dox.html @@ -37,7 +37,7 @@ diff --git a/develop/maybe_metadata_reads.html b/develop/maybe_metadata_reads.html index b03332566d5..1871ce87c8c 100644 --- a/develop/maybe_metadata_reads.html +++ b/develop/maybe_metadata_reads.html @@ -37,7 +37,7 @@ diff --git a/develop/md__c_o_d_e___o_f___c_o_n_d_u_c_t.html b/develop/md__c_o_d_e___o_f___c_o_n_d_u_c_t.html index 8f815f55523..f67d154d5ef 100644 --- a/develop/md__c_o_d_e___o_f___c_o_n_d_u_c_t.html +++ b/develop/md__c_o_d_e___o_f___c_o_n_d_u_c_t.html @@ -37,7 +37,7 @@ diff --git a/develop/md__c_o_n_t_r_i_b_u_t_i_n_g.html b/develop/md__c_o_n_t_r_i_b_u_t_i_n_g.html index 550ed756249..e79400354ee 100644 --- a/develop/md__c_o_n_t_r_i_b_u_t_i_n_g.html +++ b/develop/md__c_o_n_t_r_i_b_u_t_i_n_g.html @@ -37,7 +37,7 @@ diff --git a/develop/md__h_d_f5_examples_2_r_e_a_d_m_e.html b/develop/md__h_d_f5_examples_2_r_e_a_d_m_e.html index 793b727f2b1..261cb6d3144 100644 --- a/develop/md__h_d_f5_examples_2_r_e_a_d_m_e.html +++ b/develop/md__h_d_f5_examples_2_r_e_a_d_m_e.html @@ -37,7 +37,7 @@ @@ -142,11 +142,11 @@ FORUM and NEWS

        HDF5 SNAPSHOTS, PREVIOUS RELEASES AND SOURCE CODE

        Full Documentation and Programming Resources for this HDF5 can be found at

        -

        https://portal.hdfgroup.org/documentation/index.html

        +

        https://support.hdfgroup.org/documentation/HDF5/index.html

        Periodically development code snapshots are provided at the following URL:

        -

        https://gamma.hdfgroup.org/ftp/pub/outgoing/hdf5/snapshots/

        +

        https://github.com/HDFGroup/hdf5/releases

        Source packages for current and previous releases are located at:

        -

        https://portal.hdfgroup.org/downloads/

        +

        https://support.hdfgroup.org/releases/hdf5/downloads/

        Development code is available at our Github location:

        https://github.com/HDFGroup/hdf5.git

        diff --git a/develop/md__r_e_a_d_m_e.html b/develop/md__r_e_a_d_m_e.html index 16447643bdd..ff4fd0d4ee3 100644 --- a/develop/md__r_e_a_d_m_e.html +++ b/develop/md__r_e_a_d_m_e.html @@ -37,7 +37,7 @@ @@ -121,7 +121,7 @@ $(document).ready(function(){initNavTree('md__r_e_a_d_m_e.html',''); initResizab
        README
        -

        HDF5 version 1.15.0 released on 2024-08-29

        +

        HDF5 version 1.15.0-bca2806 released on 2024-08-30

        @@ -179,7 +179,7 @@ SNAPSHOTS, PREVIOUS RELEASES AND SOURCE CODE

        Periodically development code snapshots are provided at the following URL:

        https://github.com/HDFGroup/hdf5/releases/tag/snapshot

        Source packages for current and previous releases are located at:

        -

        https://portal.hdfgroup.org/Downloads

        +

        https://support.hdfgroup.org/downloads/HDF5

        Development code is available at our Github location:

        https://github.com/HDFGroup/hdf5.git

        diff --git a/develop/md__s_e_c_u_r_i_t_y.html b/develop/md__s_e_c_u_r_i_t_y.html index ba3b8548966..a2a96b86f3a 100644 --- a/develop/md__s_e_c_u_r_i_t_y.html +++ b/develop/md__s_e_c_u_r_i_t_y.html @@ -37,7 +37,7 @@
        diff --git a/develop/md_bin_2_r_e_a_d_m_e.html b/develop/md_bin_2_r_e_a_d_m_e.html index b17f2b660bc..9db976f73ee 100644 --- a/develop/md_bin_2_r_e_a_d_m_e.html +++ b/develop/md_bin_2_r_e_a_d_m_e.html @@ -37,7 +37,7 @@ diff --git a/develop/md_config_2_r_e_a_d_m_e.html b/develop/md_config_2_r_e_a_d_m_e.html index 492da022d93..ab9713dc011 100644 --- a/develop/md_config_2_r_e_a_d_m_e.html +++ b/develop/md_config_2_r_e_a_d_m_e.html @@ -37,7 +37,7 @@ diff --git a/develop/md_doc_2branches-explained.html b/develop/md_doc_2branches-explained.html index eb80c306304..e43a5ac1ff9 100644 --- a/develop/md_doc_2branches-explained.html +++ b/develop/md_doc_2branches-explained.html @@ -37,7 +37,7 @@ diff --git a/develop/md_doc_2cmake-vols-fetchcontent.html b/develop/md_doc_2cmake-vols-fetchcontent.html index abdabbf4ef5..222fc203a5d 100644 --- a/develop/md_doc_2cmake-vols-fetchcontent.html +++ b/develop/md_doc_2cmake-vols-fetchcontent.html @@ -37,7 +37,7 @@ diff --git a/develop/md_doc_2code-conventions.html b/develop/md_doc_2code-conventions.html index c9ed4af3d33..2e0cc726b05 100644 --- a/develop/md_doc_2code-conventions.html +++ b/develop/md_doc_2code-conventions.html @@ -37,7 +37,7 @@ diff --git a/develop/md_doc_2file-locking.html b/develop/md_doc_2file-locking.html index 0e78ae5672b..afa415350be 100644 --- a/develop/md_doc_2file-locking.html +++ b/develop/md_doc_2file-locking.html @@ -37,7 +37,7 @@ diff --git a/develop/md_doc_2library-init-shutdown.html b/develop/md_doc_2library-init-shutdown.html index f27c4c64261..680207b1468 100644 --- a/develop/md_doc_2library-init-shutdown.html +++ b/develop/md_doc_2library-init-shutdown.html @@ -37,7 +37,7 @@ diff --git a/develop/md_doc_2parallel-compression.html b/develop/md_doc_2parallel-compression.html index 8653f090fba..ead7fe9e797 100644 --- a/develop/md_doc_2parallel-compression.html +++ b/develop/md_doc_2parallel-compression.html @@ -37,7 +37,7 @@ @@ -153,14 +153,14 @@ Multi-dataset I/O support Incremental file space allocation support

        HDF5's file space allocation time is a dataset creation property that can have significant effects on application performance, especially if the application uses parallel HDF5. In a serial HDF5 application, the default file space allocation time for chunked datasets is "incremental". This means that allocation of space in the HDF5 file for data chunks is deferred until data is first written to those chunks. In parallel HDF5, the file space allocation time was previously always forced to "early", which allocates space in the file for all of a dataset's data chunks at creation time (or during the first open of a dataset if it was created serially). This would ensure that all the necessary file space was allocated so MPI ranks could perform independent I/O operations on a dataset without needing further coordination of file metadata as described previously.

        While this strategy has worked in the past, it has some noticeable drawbacks. For one, the larger the chunked dataset being created, the more noticeable overhead there will be during dataset creation as all of the data chunks are being allocated in the HDF5 file. Further, these data chunks will, by default, be filled with HDF5's default fill data value, leading to extraordinary dataset creation overhead and resulting in pre-filling large portions of a dataset that the application might have been planning to overwrite anyway. Even worse, there will be more initial overhead from compressing that fill data before writing it out, only to have it read back in, unfiltered and modified the first time a chunk is written to. In the past, it was typically suggested that parallel HDF5 applications should use H5Pset_fill_time with a value of H5D_FILL_TIME_NEVER in order to disable writing of the fill value to dataset chunks, but this isn't ideal if the application actually wishes to make use of fill values.

        -

        With improvements made to the parallel compression feature for the HDF5 1.13.1 release, "incremental" file space allocation is now the default for datasets created in parallel only if they have filters applied to them. "Early" file space allocation is still supported for these datasets if desired and is still forced for datasets created in parallel that do not have filters applied to them. This change should significantly reduce the overhead of creating filtered datasets in parallel HDF5 applications and should be helpful to applications that wish to use a fill value for these datasets. It should also help significantly reduce the size of the HDF5 file, as file space for the data chunks is allocated as needed rather than all at once.

        +

        With improvements made to the parallel compression feature for the HDF5 1.13.1 release, "incremental" file space allocation is now the default for datasets created in parallel only if they have filters applied to them. "Early" file space allocation is still supported for these datasets if desired and is still forced for datasets created in parallel that do not have filters applied to them. This change should significantly reduce the overhead of creating filtered datasets in parallel HDF5 applications and should be helpful to applications that wish to use a fill value for these datasets. It should also help significantly reduce the size of the HDF5 file, as file space for the data chunks is allocated as needed rather than all at once.

        Performance Considerations

        Since getting good performance out of HDF5's parallel compression feature involves several factors, the following is a list of performance considerations (generally from most to least important) and best practices to take into account when trying to get the optimal performance out of the parallel compression feature.

        Begin with a good chunking strategy

        -

        Starting with a good chunking strategy will generally have the largest impact on overall application performance. The different chunking parameters can be difficult to fine-tune, but it is essential to start with a well-performing chunking layout before adding compression and parallel I/O into the mix. Compression itself adds overhead and may have side effects that necessitate further adjustment of the chunking parameters and HDF5 application settings. Consider that the chosen chunk size becomes a very important factor when compression is involved, as data chunks have to be completely read and re-written to perform partial writes to the chunk.

        -

        Improving I/O performance with HDF5 compressed datasets is a useful reference for more information on getting good performance when using a chunked dataset layout.

        +

        Starting with a good chunking strategy will generally have the largest impact on overall application performance. The different chunking parameters can be difficult to fine-tune, but it is essential to start with a well-performing chunking layout before adding compression and parallel I/O into the mix. Compression itself adds overhead and may have side effects that necessitate further adjustment of the chunking parameters and HDF5 application settings. Consider that the chosen chunk size becomes a very important factor when compression is involved, as data chunks have to be completely read and re-written to perform partial writes to the chunk.

        +

        Improving I/O performance with HDF5 compressed datasets is a useful reference for more information on getting good performance when using a chunked dataset layout.

        Avoid chunk sharing

        Since the parallel compression feature has to assign ownership of data chunks to a single MPI rank in order to avoid the previously described read-modify-write issue, an HDF5 application may need to take care when determining how a dataset will be divided up among the MPI ranks writing to it. Each dataset data chunk that is written to by more than 1 MPI rank will incur extra MPI overhead as one of the ranks takes ownership and the other ranks send it their data and information about where in the chunk that data belongs. While not always possible to do, an HDF5 application will get the best performance out of parallel compression if it can avoid writing in a way that causes more than 1 MPI rank to write to any given data chunk in a dataset.

        diff --git a/develop/md_doxygen_2examples_2menus_2core__menu.html b/develop/md_doxygen_2examples_2menus_2core__menu.html index 69cda6a657c..c60a142ee0c 100644 --- a/develop/md_doxygen_2examples_2menus_2core__menu.html +++ b/develop/md_doxygen_2examples_2menus_2core__menu.html @@ -37,7 +37,7 @@ diff --git a/develop/md_doxygen_2examples_2menus_2fortran__menu.html b/develop/md_doxygen_2examples_2menus_2fortran__menu.html index 4b6a787227a..57338de1133 100644 --- a/develop/md_doxygen_2examples_2menus_2fortran__menu.html +++ b/develop/md_doxygen_2examples_2menus_2fortran__menu.html @@ -37,7 +37,7 @@ diff --git a/develop/md_doxygen_2examples_2menus_2high__level__menu.html b/develop/md_doxygen_2examples_2menus_2high__level__menu.html index fe6ce31f40f..63d4218647c 100644 --- a/develop/md_doxygen_2examples_2menus_2high__level__menu.html +++ b/develop/md_doxygen_2examples_2menus_2high__level__menu.html @@ -37,7 +37,7 @@ diff --git a/develop/md_doxygen_2examples_2menus_2java__menu.html b/develop/md_doxygen_2examples_2menus_2java__menu.html index eedcf8041f7..212d28e713b 100644 --- a/develop/md_doxygen_2examples_2menus_2java__menu.html +++ b/develop/md_doxygen_2examples_2menus_2java__menu.html @@ -37,7 +37,7 @@ diff --git a/develop/md_fortran_2src_2_r_e_a_d_m_e.html b/develop/md_fortran_2src_2_r_e_a_d_m_e.html index 084336cc34a..d2c54f63d57 100644 --- a/develop/md_fortran_2src_2_r_e_a_d_m_e.html +++ b/develop/md_fortran_2src_2_r_e_a_d_m_e.html @@ -37,7 +37,7 @@ diff --git a/develop/md_release__docs_2_r_e_a_d_m_e.html b/develop/md_release__docs_2_r_e_a_d_m_e.html index e7b7e108f33..f9f56cdc356 100644 --- a/develop/md_release__docs_2_r_e_a_d_m_e.html +++ b/develop/md_release__docs_2_r_e_a_d_m_e.html @@ -37,7 +37,7 @@ diff --git a/develop/md_release__docs_2_r_e_l_e_a_s_e___p_r_o_c_e_s_s.html b/develop/md_release__docs_2_r_e_l_e_a_s_e___p_r_o_c_e_s_s.html index 1c5c6e12b42..381b156917a 100644 --- a/develop/md_release__docs_2_r_e_l_e_a_s_e___p_r_o_c_e_s_s.html +++ b/develop/md_release__docs_2_r_e_l_e_a_s_e___p_r_o_c_e_s_s.html @@ -37,7 +37,7 @@ @@ -138,7 +138,7 @@ Description (HDF5):

        Maintenance releases are always forward compatible with regards to the HDF5 file format, meaning that:

        • HDF5 libraries and command line utilities can access files created by future maintenance versions of the library. Note that maintenance releases are NOT guaranteed to be interface-compatible, meaning that, on occasion, application source code will need updated and re-compiled against a new maintenance release when the interface changes. Interface changes are only made when absolutely necessary as deemed by the HDF5 product manager(s), and interface compatibility reports are published with each release to inform customers and users of any incompatibilities in the interface.
        -

        For more information on the HDF5 versioning and backward and forward compatibility issues, see the API Compatibility Macros on the public website.

        +

        For more information on the HDF5 versioning and backward and forward compatibility issues, see the API Compatibility Macros on the public website.

        Participants:

          @@ -176,9 +176,9 @@ Tasks:
        • Update current compiler information for each platform in the PLATFORMS TESTED section of RELEASE.txt.
        • Review the RELEASE.txt for formatting and language to verify that it corresponds to guidelines found in [Writing Notes in a RELEASE.txt(this is missing)]() File.
        • Review and update, if needed, the README and COPYING files.
        • -
        • Review and update all INSTALL_* files in release_docs, if needed.
        • Download and inspect release build source and binary files. Downloaded source files should build correctly, one or more binaries should install and run correctly. There should be nothing missing nor any extraneous files that aren’t meant for release.
        • -
        • Verify the interface compatibility reports between the current source and the previous release on the Github Snapshots page.
            +
          • Verify the interface compatibility reports between the current source and the previous release on the Github [Snapshots]u14] page.
            • The compatibility reports are produced by the CI and are viewable in the Github Releases/snapshot section.
          • @@ -245,7 +245,7 @@ Tasks:
          • $ git push
        • -
        • Change the release preparation branch's version number to X.Y.Z-{SR+1} using the bin/h5vers script:
            +
          • Change the release preparation branch's version number to X.Y.Z-{SR+1} using the bin/h5vers/bin/h5vers script:
            • $ git checkout hdf5_X_Y_Z;
            • $ bin/h5vers -s X.Y.Z-{SR+1};
            • $ git commit -m "Updated release preparation branch version number to X.Y.Z-{SR+1}"
            • @@ -254,7 +254,7 @@ Tasks:
            • Update default configuration mode
              • $ git checkout hdf5_X_Y_Z; and $ bin/switch_maint_mode -disable ./configure.ac to disable AM_MAINTAINER_MODE.
              • -
              • Need to set option HDF5_GENERATE_HEADERS to OFF, currently in line 996 of src/CMakeLists.txt.
              • +
              • Need to set option HDF5_GENERATE_HEADERS to OFF, currently in line 996 of [src/CMakeLists.txt][11].
              • Change the release preparation branch's (i.e. hdf5_X_Y_Z) default configuration mode from development to production in configure.ac.
              • Find “Determine build mode” in configure.ac.
              • Change default=debug to default=production at the bottom of the AS_HELP_STRING for --enable-build-mode.
              • @@ -279,7 +279,7 @@ Tasks:
              • P is some pre-release number.
            • -
            • Send a message to the HDF forum indicating that a pre-release source package is available for testing at <e.g. gamma.hdfgroup.org/ftp/pub/outgoing/hdf5/{hdf5-X.Y.Z-P}> and that feedback from the user community on their test results is being accepted.
            • +
            • Send a message to the HDF forum indicating that a pre-release source package is available for testing at <e.g. https://github.com/HDFGroup/hdf5/releases/{hdf5-X.Y.Z-P}> and that feedback from the user community on their test results is being accepted.
            • Contact paying clients who are interested in testing the pre-release source package and inform them that it is available for testing and that feedback on their test results of the pre-release is appreciated.
            • This should be automated and currently github binaries are not signed.
              • Follow the [How to sign binaries with digital certificates(this is missing)]() work instructions to sign each Windows and Mac binary package with a digital certificate.
              • diff --git a/develop/md_test_2_a_p_i_2_r_e_a_d_m_e.html b/develop/md_test_2_a_p_i_2_r_e_a_d_m_e.html index e3abdec3658..d84f1d78fe8 100644 --- a/develop/md_test_2_a_p_i_2_r_e_a_d_m_e.html +++ b/develop/md_test_2_a_p_i_2_r_e_a_d_m_e.html @@ -37,7 +37,7 @@
        diff --git a/develop/namespace_h5.html b/develop/namespace_h5.html index 59a48779b8f..93f22a93952 100644 --- a/develop/namespace_h5.html +++ b/develop/namespace_h5.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5a.html b/develop/namespaceh5a.html index 28ece9e38bf..a8c3bbd2482 100644 --- a/develop/namespaceh5a.html +++ b/develop/namespaceh5a.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5d.html b/develop/namespaceh5d.html index ed0ff8ad384..d2eec171c35 100644 --- a/develop/namespaceh5d.html +++ b/develop/namespaceh5d.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5do.html b/develop/namespaceh5do.html index 69df1037406..f1443c9f844 100644 --- a/develop/namespaceh5do.html +++ b/develop/namespaceh5do.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5ds.html b/develop/namespaceh5ds.html index 504b0126d1e..cea66b2910d 100644 --- a/develop/namespaceh5ds.html +++ b/develop/namespaceh5ds.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5e.html b/develop/namespaceh5e.html index c801f4b03d5..ccf50e75081 100644 --- a/develop/namespaceh5e.html +++ b/develop/namespaceh5e.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5es.html b/develop/namespaceh5es.html index 8517feb0aa6..d116c3be5f2 100644 --- a/develop/namespaceh5es.html +++ b/develop/namespaceh5es.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5f.html b/develop/namespaceh5f.html index f6139b6e919..8390c868bbb 100644 --- a/develop/namespaceh5f.html +++ b/develop/namespaceh5f.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5fortkit.html b/develop/namespaceh5fortkit.html index 3b6a871c192..0f79a8975e8 100644 --- a/develop/namespaceh5fortkit.html +++ b/develop/namespaceh5fortkit.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5g.html b/develop/namespaceh5g.html index 4cf94cd16c4..1efe40a82ed 100644 --- a/develop/namespaceh5g.html +++ b/develop/namespaceh5g.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5global.html b/develop/namespaceh5global.html index 2baa7e3e9a4..f2e1853200d 100644 --- a/develop/namespaceh5global.html +++ b/develop/namespaceh5global.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5i.html b/develop/namespaceh5i.html index b2e9a024785..fc296424f2e 100644 --- a/develop/namespaceh5i.html +++ b/develop/namespaceh5i.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5im.html b/develop/namespaceh5im.html index 54c552b500d..04cec11a9c8 100644 --- a/develop/namespaceh5im.html +++ b/develop/namespaceh5im.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5l.html b/develop/namespaceh5l.html index ea0a079dfd5..91eab64774c 100644 --- a/develop/namespaceh5l.html +++ b/develop/namespaceh5l.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5lib.html b/develop/namespaceh5lib.html index 9671be06bd7..c360371cb86 100644 --- a/develop/namespaceh5lib.html +++ b/develop/namespaceh5lib.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5lt.html b/develop/namespaceh5lt.html index 037158a090d..7cef546db07 100644 --- a/develop/namespaceh5lt.html +++ b/develop/namespaceh5lt.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5o.html b/develop/namespaceh5o.html index 0c276ef1dc1..7b90243e3d3 100644 --- a/develop/namespaceh5o.html +++ b/develop/namespaceh5o.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5p.html b/develop/namespaceh5p.html index 974f9ca186d..1ef393c1be8 100644 --- a/develop/namespaceh5p.html +++ b/develop/namespaceh5p.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5r.html b/develop/namespaceh5r.html index 3dbaf87e99a..5d7f8f57dea 100644 --- a/develop/namespaceh5r.html +++ b/develop/namespaceh5r.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5s.html b/develop/namespaceh5s.html index 270c4450570..732ea562262 100644 --- a/develop/namespaceh5s.html +++ b/develop/namespaceh5s.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5t.html b/develop/namespaceh5t.html index 8ab8bcf28a5..97d929116ea 100644 --- a/develop/namespaceh5t.html +++ b/develop/namespaceh5t.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5tb.html b/develop/namespaceh5tb.html index 62e4e4e3334..43e35b10645 100644 --- a/develop/namespaceh5tb.html +++ b/develop/namespaceh5tb.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5vl.html b/develop/namespaceh5vl.html index c84c39bbbc5..4fe16307df3 100644 --- a/develop/namespaceh5vl.html +++ b/develop/namespaceh5vl.html @@ -37,7 +37,7 @@ diff --git a/develop/namespaceh5z.html b/develop/namespaceh5z.html index 1924f71c33d..67f10c81bab 100644 --- a/develop/namespaceh5z.html +++ b/develop/namespaceh5z.html @@ -37,7 +37,7 @@ diff --git a/develop/namespacehdf5.html b/develop/namespacehdf5.html index d2f73811c6b..d4a993b91d5 100644 --- a/develop/namespacehdf5.html +++ b/develop/namespacehdf5.html @@ -37,7 +37,7 @@ diff --git a/develop/namespacehdf_1_1hdf5lib.html b/develop/namespacehdf_1_1hdf5lib.html index cddf01c5ec9..4e48d1d4d34 100644 --- a/develop/namespacehdf_1_1hdf5lib.html +++ b/develop/namespacehdf_1_1hdf5lib.html @@ -37,7 +37,7 @@ diff --git a/develop/namespacehdf_1_1hdf5lib_1_1callbacks.html b/develop/namespacehdf_1_1hdf5lib_1_1callbacks.html index b09f9785a4a..8e645e38cae 100644 --- a/develop/namespacehdf_1_1hdf5lib_1_1callbacks.html +++ b/develop/namespacehdf_1_1hdf5lib_1_1callbacks.html @@ -37,7 +37,7 @@ diff --git a/develop/namespacehdf_1_1hdf5lib_1_1exceptions.html b/develop/namespacehdf_1_1hdf5lib_1_1exceptions.html index 0148233324f..926e25a9484 100644 --- a/develop/namespacehdf_1_1hdf5lib_1_1exceptions.html +++ b/develop/namespacehdf_1_1hdf5lib_1_1exceptions.html @@ -37,7 +37,7 @@ diff --git a/develop/namespacehdf_1_1hdf5lib_1_1structs.html b/develop/namespacehdf_1_1hdf5lib_1_1structs.html index 69a37524994..727aa81d07c 100644 --- a/develop/namespacehdf_1_1hdf5lib_1_1structs.html +++ b/develop/namespacehdf_1_1hdf5lib_1_1structs.html @@ -37,7 +37,7 @@ diff --git a/develop/namespacel__type__mod.html b/develop/namespacel__type__mod.html index 5785daaf350..d972bb3ca15 100644 --- a/develop/namespacel__type__mod.html +++ b/develop/namespacel__type__mod.html @@ -37,7 +37,7 @@ diff --git a/develop/namespacetype__mod.html b/develop/namespacetype__mod.html index d7b0553f683..2a03742c704 100644 --- a/develop/namespacetype__mod.html +++ b/develop/namespacetype__mod.html @@ -37,7 +37,7 @@ diff --git a/develop/parallel-compression_8md.html b/develop/parallel-compression_8md.html index 1ea8ce3d820..f636de5249e 100644 --- a/develop/parallel-compression_8md.html +++ b/develop/parallel-compression_8md.html @@ -37,7 +37,7 @@ diff --git a/develop/predefined_datatypes_8dox.html b/develop/predefined_datatypes_8dox.html index eee9f8ea688..507e95944da 100644 --- a/develop/predefined_datatypes_8dox.html +++ b/develop/predefined_datatypes_8dox.html @@ -37,7 +37,7 @@ diff --git a/develop/predefined_datatypes_tables.html b/develop/predefined_datatypes_tables.html index 9863e014d1b..a5dde0b4326 100644 --- a/develop/predefined_datatypes_tables.html +++ 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b/develop/struct_h5_v_l__dataset__get__args__t.html @@ -37,7 +37,7 @@ diff --git a/develop/struct_h5_v_l__dataset__specific__args__t.html b/develop/struct_h5_v_l__dataset__specific__args__t.html index 749fe3041c6..80de5057fd4 100644 --- a/develop/struct_h5_v_l__dataset__specific__args__t.html +++ b/develop/struct_h5_v_l__dataset__specific__args__t.html @@ -37,7 +37,7 @@ diff --git a/develop/struct_h5_v_l__datatype__class__t.html b/develop/struct_h5_v_l__datatype__class__t.html index afdc8f9df6c..a64d2af191e 100644 --- a/develop/struct_h5_v_l__datatype__class__t.html +++ b/develop/struct_h5_v_l__datatype__class__t.html @@ -37,7 +37,7 @@ diff --git a/develop/struct_h5_v_l__datatype__get__args__t.html b/develop/struct_h5_v_l__datatype__get__args__t.html index 5508ad97389..a5534f6acd8 100644 --- a/develop/struct_h5_v_l__datatype__get__args__t.html +++ b/develop/struct_h5_v_l__datatype__get__args__t.html @@ -37,7 +37,7 @@ diff --git a/develop/struct_h5_v_l__datatype__specific__args__t.html 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b/develop/structdump__functions.html index 9a76d9e9810..853eb48a44f 100644 --- a/develop/structdump__functions.html +++ b/develop/structdump__functions.html @@ -37,7 +37,7 @@ diff --git a/develop/structdump__opt__t.html b/develop/structdump__opt__t.html index acc85665512..71ec0add493 100644 --- a/develop/structdump__opt__t.html +++ b/develop/structdump__opt__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structfilter__info__t.html b/develop/structfilter__info__t.html index c43dde762d1..ca56976d8e2 100644 --- a/develop/structfilter__info__t.html +++ b/develop/structfilter__info__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5dump__table__items__t.html b/develop/structh5dump__table__items__t.html index 93a3a91b88c..0e949e94d1d 100644 --- a/develop/structh5dump__table__items__t.html +++ b/develop/structh5dump__table__items__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5dump__table__list__t.html b/develop/structh5dump__table__list__t.html index ff466909246..e543f1d5f74 100644 --- a/develop/structh5dump__table__list__t.html +++ b/develop/structh5dump__table__list__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5e_1_1h5e__error__t.html b/develop/structh5e_1_1h5e__error__t.html index 4d1f219879d..1388cea4c16 100644 --- a/develop/structh5e_1_1h5e__error__t.html +++ b/develop/structh5e_1_1h5e__error__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5f_1_1h5f__info__free__t.html b/develop/structh5f_1_1h5f__info__free__t.html index 67ba76422de..37f71bd2c23 100644 --- a/develop/structh5f_1_1h5f__info__free__t.html +++ b/develop/structh5f_1_1h5f__info__free__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5f_1_1h5f__info__sohm__t.html b/develop/structh5f_1_1h5f__info__sohm__t.html index 6a66864309d..824a0eda3b5 100644 --- a/develop/structh5f_1_1h5f__info__sohm__t.html +++ b/develop/structh5f_1_1h5f__info__sohm__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5f_1_1h5f__info__super__t.html b/develop/structh5f_1_1h5f__info__super__t.html index f2645071b20..7de8971eadd 100644 --- a/develop/structh5f_1_1h5f__info__super__t.html +++ b/develop/structh5f_1_1h5f__info__super__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5f_1_1h5f__info__t.html b/develop/structh5f_1_1h5f__info__t.html index 31e69a4a166..96a004b69bf 100644 --- a/develop/structh5f_1_1h5f__info__t.html +++ b/develop/structh5f_1_1h5f__info__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5g_1_1h5g__info__t.html b/develop/structh5g_1_1h5g__info__t.html index b903e9fe2e3..19c7a6652dd 100644 --- a/develop/structh5g_1_1h5g__info__t.html +++ b/develop/structh5g_1_1h5g__info__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5global_1_1h5__ih__info__t.html b/develop/structh5global_1_1h5__ih__info__t.html index 5ce66155e17..5bd91af1715 100644 --- a/develop/structh5global_1_1h5__ih__info__t.html +++ b/develop/structh5global_1_1h5__ih__info__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5global_1_1h5o__token__t__f.html b/develop/structh5global_1_1h5o__token__t__f.html index e5fe333c8d1..aceed9df628 100644 --- a/develop/structh5global_1_1h5o__token__t__f.html +++ b/develop/structh5global_1_1h5o__token__t__f.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5global_1_1hdset__reg__ref__t__f.html b/develop/structh5global_1_1hdset__reg__ref__t__f.html index a5dad52a78b..4d0ecdf71d6 100644 --- a/develop/structh5global_1_1hdset__reg__ref__t__f.html +++ b/develop/structh5global_1_1hdset__reg__ref__t__f.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5global_1_1hobj__ref__t__f.html b/develop/structh5global_1_1hobj__ref__t__f.html index cc4f2e627e9..d0a49685d2c 100644 --- a/develop/structh5global_1_1hobj__ref__t__f.html +++ b/develop/structh5global_1_1hobj__ref__t__f.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5l_1_1h5l__info__t.html b/develop/structh5l_1_1h5l__info__t.html index 419c78a3220..d0f4620de2f 100644 --- a/develop/structh5l_1_1h5l__info__t.html +++ b/develop/structh5l_1_1h5l__info__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5l_1_1union__t.html b/develop/structh5l_1_1union__t.html index e07060fd790..c13979b1def 100644 --- a/develop/structh5l_1_1union__t.html +++ b/develop/structh5l_1_1union__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5o_1_1c__h5o__info__t.html b/develop/structh5o_1_1c__h5o__info__t.html index f4898a7fc82..21c5f69904e 100644 --- a/develop/structh5o_1_1c__h5o__info__t.html +++ b/develop/structh5o_1_1c__h5o__info__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5o_1_1c__h5o__native__info__t.html b/develop/structh5o_1_1c__h5o__native__info__t.html index 44d8917ba83..eb10332451c 100644 --- a/develop/structh5o_1_1c__h5o__native__info__t.html +++ b/develop/structh5o_1_1c__h5o__native__info__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5o_1_1c__hdr__t.html b/develop/structh5o_1_1c__hdr__t.html index 80e2fae2d60..fc0b9e5df11 100644 --- a/develop/structh5o_1_1c__hdr__t.html +++ b/develop/structh5o_1_1c__hdr__t.html @@ -37,7 +37,7 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b/develop/structh5o_1_1meta__size__t.html index 76c9150f0b0..0e9e06acff4 100644 --- a/develop/structh5o_1_1meta__size__t.html +++ b/develop/structh5o_1_1meta__size__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5o_1_1space__t.html b/develop/structh5o_1_1space__t.html index bb363a82f3e..d3c3480c28c 100644 --- a/develop/structh5o_1_1space__t.html +++ b/develop/structh5o_1_1space__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5p_1_1h5fd__ioc__config__t.html b/develop/structh5p_1_1h5fd__ioc__config__t.html index f8e1b4feb9d..dbd53e4c292 100644 --- a/develop/structh5p_1_1h5fd__ioc__config__t.html +++ b/develop/structh5p_1_1h5fd__ioc__config__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structh5p_1_1h5fd__subfiling__config__t.html b/develop/structh5p_1_1h5fd__subfiling__config__t.html index 772ae52ea8c..6043004fc71 100644 --- a/develop/structh5p_1_1h5fd__subfiling__config__t.html +++ b/develop/structh5p_1_1h5fd__subfiling__config__t.html @@ -37,7 +37,7 @@ diff --git 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b/develop/structinfilesformat.html @@ -37,7 +37,7 @@ diff --git a/develop/structinfo__header__t.html b/develop/structinfo__header__t.html index aed1303a177..e615c1008cb 100644 --- a/develop/structinfo__header__t.html +++ b/develop/structinfo__header__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structio__req__t.html b/develop/structio__req__t.html index 3ed3d4c6ffb..dd9a5041639 100644 --- a/develop/structio__req__t.html +++ b/develop/structio__req__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structioc__io__queue__entry__t.html b/develop/structioc__io__queue__entry__t.html index 02ff326e3ff..a4c94254c82 100644 --- a/develop/structioc__io__queue__entry__t.html +++ b/develop/structioc__io__queue__entry__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structioc__io__queue__t.html b/develop/structioc__io__queue__t.html index 0aa7b3fa02a..f131f10cf55 100644 --- a/develop/structioc__io__queue__t.html +++ b/develop/structioc__io__queue__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structnamed__dt__t.html b/develop/structnamed__dt__t.html index 07fb1c07b99..204d7cfe527 100644 --- a/develop/structnamed__dt__t.html +++ b/develop/structnamed__dt__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structobj__list__t.html b/develop/structobj__list__t.html index ed41f19bd8e..821ddc0cf2c 100644 --- a/develop/structobj__list__t.html +++ b/develop/structobj__list__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structpack__info__t.html b/develop/structpack__info__t.html index 58dba5e80a9..dd6439b1325 100644 --- a/develop/structpack__info__t.html +++ b/develop/structpack__info__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structpack__opt__t.html b/develop/structpack__opt__t.html index 0fd35d4df33..a02016a5a29 100644 --- a/develop/structpack__opt__t.html +++ b/develop/structpack__opt__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structpack__opttbl__t.html b/develop/structpack__opttbl__t.html index 2b2305d55cf..f130770decb 100644 --- a/develop/structpack__opttbl__t.html +++ b/develop/structpack__opttbl__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structparsed__url__t.html b/develop/structparsed__url__t.html index 9fea11c0fb4..4ca455a79db 100644 --- a/develop/structparsed__url__t.html +++ b/develop/structparsed__url__t.html @@ -37,7 +37,7 @@ diff --git a/develop/structpath__info.html b/develop/structpath__info.html index 21e94cd555c..4aad326f509 100644 --- a/develop/structpath__info.html +++ b/develop/structpath__info.html @@ -37,7 +37,7 @@ diff --git a/develop/structs3r__t.html b/develop/structs3r__t.html index 40e69a1385a..d0d98307540 100644 --- a/develop/structs3r__t.html +++ b/develop/structs3r__t.html @@ -37,7 +37,7 @@ diff --git a/develop/test_2_a_p_i_2_r_e_a_d_m_e_8md.html b/develop/test_2_a_p_i_2_r_e_a_d_m_e_8md.html index d663c184bb1..4f7777bd63a 100644 --- a/develop/test_2_a_p_i_2_r_e_a_d_m_e_8md.html +++ b/develop/test_2_a_p_i_2_r_e_a_d_m_e_8md.html @@ -37,7 +37,7 @@ diff --git a/develop/thread-safe-lib.html b/develop/thread-safe-lib.html new file mode 100644 index 00000000000..28b190c46ae --- /dev/null +++ b/develop/thread-safe-lib.html @@ -0,0 +1,452 @@ + + + + + + + +HDF5: Thread Safe Library + + + + + + + + + + + + + + + + + +
        Please, help us to better serve our user community by answering the following short survey: https://www.hdfgroup.org/website-survey/
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        +
        Thread Safe Library
        +
        +
        +

        +Library header files and conditional compilation

        +

        The following code is placed at the beginning of H5private.h:

        #ifdef H5_HAVE_THREADSAFE
        +
        #include <pthread.h>
        +
        #endif
        +

        H5_HAVE_THREADSAFE is defined when the HDF5 library is compiled with the –enable-threadsafe configuration option using autotools or HDF5_ENABLE_THREADSAFE=ON using CMake. In general, code for the non-threadsafe version of HDF5 library are placed within the # else part of the conditional compilation. The exception to this rule are the changes to the FUNC_ENTER (in H5private.h), HRETURN and HRETURN_ERROR (in H5Eprivate.h) macros (see section Changes to HRETURN and HRETURN_ERROR).

        +

        +Global variables/structures

        +

        +Global library initialization variable

        +

        In the threadsafe implementation, the global library initialization variable H5_libinit_g is changed to a global structure consisting of the variable with its associated lock (locks are explained in section Recursive Locks):

        hbool_t H5_libinit_g = FALSE;
        +
        bool hbool_t
        Definition H5public.h:253
        +

        becomes

        H5_api_t H5_g;
        +

        where H5_api_t is

        typedef struct H5_api_struct {
        +
        H5_mutex_t init_lock; // API entrance mutex
        +
        hbool_t H5_libinit_g;
        +
        } H5_api_t;
        +

        All former references to H5_libinit_g in the library are now made using the macro H5_INIT_GLOBAL. If the threadsafe library is to be used, the macro is set to H5_g.H5_libinit_g instead.

        +

        +Global serialization variable

        +

        A new global boolean variable H5_allow_concurrent_g is used to determine if multiple threads are allowed to an API call simultaneously. This is set to FALSE.

        +

        All APIs that are allowed to do so have their own local variable that shadows the global variable and is set to TRUE. In phase 1, no such APIs exist.

        +

        It is defined in H5.c as follows:

        hbool_t H5_allow_concurrent_g = FALSE;
        +

        +Global thread initialization variable

        +

        The global variable H5_first_init_g of type pthread_once_t is used to allow only the first thread in the application process to call an initialization function using pthread_once. All subsequent calls to pthread_once by any thread are disregarded.

        +

        The call sets up the mutex in the global structure H5_g (see section Global library initialization variable) via an initialization function H5_first_thread_init. The first thread initialization function is described in section First thread initialization.

        +

        H5_first_init_g is defined in H5.c as follows:

        pthread_once_t H5_first_init_g = PTHREAD_ONCE_INIT;
        +

        +Global key for per-thread error stacks

        +

        A global pthread-managed key H5_errstk_key_g is used to allow pthreads to maintain a separate error stack (of type H5E_t) for each thread. This is defined in H5.c as:

        pthread_key_t H5_errstk_key_g;
        +

        Error stack management is described in section Per-thread error stack management.

        +

        +Global structure and key for thread cancellation prevention

        +

        We need to preserve the thread cancellation status of each thread individually by using a key H5_cancel_key_g. The status is preserved using a structure (of type H5_cancel_t) which maintains the cancellability state of the thread before it entered the library and a count (which works very much like the recursive lock counter) which keeps track of the number of API calls the thread makes within the library.

        +

        The structure is defined in H5private.h as:

        // cancellability structure
        +
        typedef struct H5_cancel_struct {
        +
        int previous_state;
        +
        unsigned int cancel_count;
        +
        } H5_cancel_t;
        +

        Thread cancellation is described in section Thread Cancellation safety.

        +

        +Changes to Macro expansions

        +

        +Changes to FUNC_ENTER

        +

        The FUNC_ENTER macro is now extended to include macro calls to initialize first threads, disable cancellability and wraps a lock operation around the checking of the global initialization flag. It should be noted that the cancellability should be disabled before acquiring the lock on the library. Doing so otherwise would allow the possibility that the thread be cancelled just after it has acquired the lock on the library and in that scenario, if the cleanup routines are not properly set, the library would be permanently locked out.

        +

        The additional macro code and new macro definitions can be found in Appendix Macro expansion codes. The changes are made in H5private.h.

        +

        +Changes to HRETURN and HRETURN_ERROR

        +

        The HRETURN and HRETURN_ERROR macros are the counterparts to the FUNC_ENTER macro described in section Changes to FUNC_ENTER. FUNC_LEAVE makes a macro call to HRETURN, so it is also covered here.

        +

        The basic changes to these two macros involve adding macro calls to call an unlock operation and re-enable cancellability if necessary. It should be noted that the cancellability should be re-enabled only after the thread has released the lock to the library. The consequence of doing otherwise would be similar to that described in section Changes to FUNC_ENTER.

        +

        The additional macro code and new macro definitions can be found in Appendix Macro expansion codes. The changes are made in H5Eprivate.h.

        +

        +Implementation of threadsafe functionality

        +

        +Recursive Locks

        +

        A recursive mutex lock m allows a thread t1 to successfully lock m more than once without blocking t1. Another thread t2 will block if t2 tries to lock m while t1 holds the lock to m. If t1 makes k lock calls on m, then it also needs to make k unlock calls on m before it releases the lock.

        +

        Our implementation of recursive locks is built on top of a pthread mutex lock (which is not recursive). It makes use of a pthread condition variable to have unsuccessful threads wait on the mutex. Waiting threads are awaken by a signal from the final unlock call made by the thread holding the lock.

        +

        Recursive locks are defined to be the following type (H5private.h):

        typedef struct H5_mutex_struct {
        +
        pthread_t owner_thread; // current lock owner
        +
        pthread_mutex_t atomic_lock; // lock for atomicity of new mechanism
        +
        pthread_cond_t cond_var; // condition variable
        +
        unsigned int lock_count;
        +
        } H5_mutex_t;
        +

        Detailed implementation code can be found in Appendix Recursive Lock implementation code. The implementation changes are made in H5TS.c.

        +

        +First thread initialization

        +

        Because the mutex lock associated with a recursive lock cannot be statically initialized, a mechanism is required to initialize the recursive lock associated with H5_g so that it can be used for the first time.

        +

        The pthreads library allows this through the pthread_once call which as described in section Global thread initialization variable allows only the first thread accessing the library in an application to initialize H5_g.

        +

        In addition to initializing H5_g, it also initializes the key (see section Global key for per-thread error stacks) for use with per-thread error stacks (see section Per-thread error stack management).

        +

        The first thread initialization mechanism is implemented as the function call H5_first_thread_init() in H5TS.c. This is described in appendix B.

        +

        +Per-thread error stack management

        +

        Pthreads allows individual threads to access dynamic and persistent per-thread data through the use of keys. Each key is associated with a table that maps threads to data items. Keys can be initialized by pthread_key_create() in pthreads (see sections Global key for per-thread error stacks and First thread initialization). Per-thread data items are accessed using a key through the pthread_getspecific() and pthread_setspecific() calls to read and write to the association table respectively.

        +

        Per-thread error stacks are accessed through the key H5_errstk_key_g which is initialized by the first thread initialization call (see section First thread initialization).

        +

        In the non-threadsafe version of the library, there is a global stack variable H5E_stack_g[1] which is no longer defined in the threadsafe version. At the same time, the macro call to gain access to the error stack H5E_get_my_stack is changed from:

        #define H5E_get_my_stack() (H5E_stack_g+0)
        +

        to:

        #define H5E_get_my_stack() H5E_get_stack()
        +

        where H5E_get_stack() is a surrogate function that does the following operations:

          +
        1. +

          if a thread is attempting to get an error stack for the first time, the error stack is dynamically allocated for the thread and associated with H5_errstk_key_g using pthread_setspecific(). The way we detect if it is the first time is through pthread_getspecific() which returns NULL if no previous value is associated with the thread using the key.

          +

          +
        2. +
        3. +if pthread_getspecific() returns a non-null value, then that is the pointer to the error stack associated with the thread and the stack can be used as usual.
        4. +
        +

        A final change to the error reporting routines is as follows; the current implementation reports errors to always be detected at thread 0. In the threadsafe implementation, this is changed to report the number returned by a call to pthread_self().

        +

        The change in code (reflected in H5Eprint of file H5E.c) is as follows:

        #ifdef H5_HAVE_THREADSAFE
        +
        fprintf (stream, "HDF5-DIAG: Error detected in thread %d." ,pthread_self());
        +
        #else
        +
        fprintf (stream, "HDF5-DIAG: Error detected in thread 0.");
        +
        #endif
        +

        Code for H5E_get_stack() can be found in Appendix Per-thread error stack acquisition. All the above changes were made in H5E.c.

        +

        +Thread Cancellation safety

        +

        To prevent thread cancellations from killing a thread while it is in the library, we maintain per-thread information about the cancellability status of the thread before it entered the library so that we can restore that same status when the thread leaves the library.

        +

        By enter and leave the library, we mean the points when a thread makes an API call from a user application and the time that API call returns. Other API or callback function calls made from within that API call are considered within the library.

        +

        Because other API calls may be made from within the first API call, we need to maintain a counter to determine which was the first and correspondingly the last return.

        +

        When a thread makes an API call, the macro H5_API_SET_CANCEL calls the worker function H5_cancel_count_inc() which does the following:

          +
        1. +if this is the first time the thread has entered the library, a new cancellability structure needs to be assigned to it.
        2. +
        3. +if the thread is already within the library when the API call is made, then cancel_count is simply incremented. Otherwise, we set the cancellability state to PTHREAD_CANCEL_DISABLE while storing the previous state into the cancellability structure. cancel_count is also incremented in this case.
        4. +
        +

        When a thread leaves an API call, the macro H5_API_UNSET_CANCEL calls the worker function H5_cancel_count_dec() which does the following:

          +
        1. +if cancel_count is greater than 1, indicating that the thread is not yet about to leave the library, then cancel_count is simply decremented.
        2. +
        3. +otherwise, we reset the cancellability state back to its original state before it entered the library and decrement the count (back to zero).
        4. +
        +

        H5_cancel_count_inc and H5_cancel_count_dec are described in Appendix Thread cancellation mechanisms and may be found in H5TS.c.

        +

        +Test programs

        +

        Except where stated, all tests involve 16 simultaneous threads that make use of HDF5 API calls without any explicit synchronization typically required in a non-threadsafe environment.

        +

        +Data set create and write

        +

        The test program sets up 16 threads to simultaneously create 16 different datasets named from zero to fifteen for a single file and then writing an integer value into that dataset equal to the dataset's named value.

        +

        The main thread would join with all 16 threads and attempt to match the resulting HDF5 file with expected results - that each dataset contains the correct value (0 for zero, 1 for one etc ...) and all datasets were correctly created.

        +

        The test is implemented in the file ttsafe_dcreate.c.

        +

        +Test on error stack

        +

        The error stack test is one in which 16 threads simultaneously try to create datasets with the same name. The result, when properly serialized, should be equivalent to 16 attempts to create the dataset with the same name.

        +

        The error stack implementation runs correctly if it reports 15 instances of the dataset name conflict error and finally generates a correct HDF5 containing that single dataset. Each thread should report its own stack of errors with a thread number associated with it.

        +

        The test is implemented in the file ttsafe_error.c.

        +

        +Test on cancellation safety

        +

        The main idea in thread cancellation safety is as follows; a child thread is spawned to create and write to a dataset. Following that, it makes a H5Diterate call on that dataset which activates a callback function.

        +

        A deliberate barrier is invoked at the callback function which waits for both the main and child thread to arrive at that point. After that happens, the main thread proceeds to make a thread cancel call on the child thread while the latter sleeps for 3 seconds before proceeding to write a new value to the dataset.

        +

        After the iterate call, the child thread logically proceeds to wait another 3 seconds before writing another newer value to the dataset.

        +

        The test is correct if the main thread manages to read the second value at the end of the test. This means that cancellation did not take place until the end of the iteration call despite of the 3 second wait within the iteration callback and the extra dataset write operation. Furthermore, the cancellation should occur before the child can proceed to write the last value into the dataset.

        +

        +Test on attribute creation

        +

        A main thread makes 16 threaded calls to H5Acreate with a generated name for each attribute. Sixteen attributes should be created for the single dataset in random (chronological) order and receive values depending on its generated attribute name (e.g. attrib010 would receive the value 10).

        +

        After joining with all child threads, the main thread proceeds to read each attribute by generated name to see if the value tallies. Failure is detected if the attribute name does not exist (meaning they were never created) or if the wrong values were read back.

        +

        +Appendix

        +

        +Recursive Lock implementation code

        +
        void H5_mutex_init(H5_mutex_t *H5_mutex)
        +
        {
        +
        H5_mutex-&gt;owner_thread = NULL;
        +
        pthread_mutex_init(&amp;H5_mutex-&gt;atomic_lock, NULL);
        +
        pthread_cond_init(&amp;H5_mutex-&gt;cond_var, NULL);
        +
        H5_mutex-&gt;lock_count = 0;
        +
        }
        +
        +
        void H5_mutex_lock(H5_mutex_t *H5_mutex)
        +
        {
        +
        pthread_mutex_lock(&amp;H5_mutex-&gt;atomic_lock);
        +
        +
        if (pthread_equal(pthread_self(), H5_mutex-&gt;owner_thread)) {
        +
        // already owned by self - increment count
        +
        H5_mutex-&gt;lock_count++;
        +
        }
        +
        else {
        +
        if (H5_mutex-&gt;owner_thread == NULL) {
        +
        // no one else has locked it - set owner and grab lock
        +
        H5_mutex-&gt;owner_thread = pthread_self();
        +
        H5_mutex-&gt;lock_count = 1;
        +
        }
        +
        else {
        +
        /* if already locked by someone else */
        +
        while (1) {
        +
        pthread_cond_wait(&amp;H5_mutex-&gt;cond_var, &amp;H5_mutex-&gt;atomic_lock);
        +
        +
        if (H5_mutex-&gt;owner_thread == NULL) {
        +
        H5_mutex-&gt;owner_thread = pthread_self();
        +
        H5_mutex-&gt;lock_count = 1;
        +
        break;
        +
        } // else do nothing and loop back to wait on condition
        +
        }
        +
        }
        +
        }
        +
        +
        pthread_mutex_unlock(&amp;H5_mutex-&gt;atomic_lock);
        +
        }
        +
        +
        void H5_mutex_unlock(H5_mutex_t *H5_mutex)
        +
        {
        +
        pthread_mutex_lock(&amp;H5_mutex-&gt;atomic_lock);
        +
        H5_mutex-&gt;lock_count--;
        +
        +
        if (H5_mutex-&gt;lock_count == 0) {
        +
        H5_mutex-&gt;owner_thread = NULL;
        +
        pthread_cond_signal(&amp;H5_mutex-&gt;cond_var);
        +
        }
        +
        pthread_mutex_unlock(&amp;H5_mutex-&gt;atomic_lock);
        +
        }
        +

        +First thread initialization

        +
        void H5_first_thread_init(void)
        +
        {
        +
        // initialize global API mutex lock
        +
        H5_g.H5_libinit_g = FALSE;
        +
        H5_g.init_lock.owner_thread = NULL;
        +
        pthread_mutex_init(&amp;H5_g.init_lock.atomic_lock, NULL);
        +
        pthread_cond_init(&amp;H5_g.init_lock.cond_var, NULL);
        +
        H5_g.init_lock.lock_count = 0;
        +
        +
        // initialize key for thread-specific error stacks
        +
        pthread_key_create(&amp;H5_errstk_key_g, NULL);
        +
        +
        // initialize key for thread cancellability mechanism
        +
        pthread_key_create(&amp;H5_cancel_key_g, NULL);
        +
        }
        +

        +Per-thread error stack acquisition

        +
        H5E_t *H5E_get_stack(void)
        +
        {
        +
        H5E_t *estack;
        +
        +
        if (estack = pthread_getspecific(H5_errstk_key_g)) {
        +
        return estack;
        +
        }
        +
        else {
        +
        // no associated value with current thread - create one
        +
        estack = (H5E_t *)malloc(sizeof(H5E_t));
        +
        pthread_setspecific(H5_errstk_key_g, (void *)estack);
        +
        return estack;
        +
        }
        +
        }
        +

        +Thread cancellation mechanisms

        +
        void H5_cancel_count_inc(void)
        +
        {
        +
        H5_cancel_t *cancel_counter;
        +
        +
        if (cancel_counter = pthread_getspecific(H5_cancel_key_g)) {
        +
        // do nothing here
        +
        }
        +
        else {
        +
        // first time thread calls library - create new counter and
        +
        // associate with key
        +
        cancel_counter = (H5_cancel_t *)malloc(sizeof(H5_cancel_t));
        +
        cancel_counter-&gt;cancel_count = 0;
        +
        pthread_setspecific(H5_cancel_key_g, (void *)cancel_counter);
        +
        }
        +
        +
        if (cancel_counter-&gt;cancel_count == 0) {
        +
        /* thread entering library */
        +
        pthread_setcancelstate(PTHREAD_CANCEL_DISABLE, &amp;(cancel_counter-&gt;previous_state));
        +
        }
        +
        +
        cancel_counter-&gt;cancel_count++;
        +
        }
        +
        +
        void H5_cancel_count_dec(void)
        +
        {
        +
        H5_cancel_t *cancel_counter = pthread_getspecific(H5_cancel_key_g);
        +
        +
        if (cancel_counter-&gt;cancel_count == 1)
        +
        pthread_setcancelstate(cancel_counter-&gt;previous_state, NULL);
        +
        +
        cancel_counter-&gt;cancel_count--;
        +
        }
        +

        +Macro expansion codes

        +

        +<code>FUNC_ENTER</code>

        +
        // Initialize the library \
        +
        H5_FIRST_THREAD_INIT \
        +
        H5_API_UNSET_CANCEL \
        +
        H5_API_LOCK_BEGIN \
        +
        if (!(H5_INIT_GLOBAL)) { \
        +
        H5_INIT_GLOBAL = TRUE; \
        +
        if (H5_init_library() &lt; 0) { \
        +
        HRETURN_ERROR (H5E_FUNC, H5E_CANTINIT, err, \
        +
        "library initialization failed"); \
        +
        } \
        +
        } \
        +
        H5_API_LOCK_END \
        +
        :
        +
        :
        +
        :
        +

        +<code>H5_FIRST_THREAD_INIT</code>

        +
        // Macro for first thread initialization
        +
        #define H5_FIRST_THREAD_INIT \
        +
        pthread_once(&amp;H5_first_init_g, H5_first_thread_init);
        +

        +<code>H5_API_UNSET_CANCEL</code>

        +
        #define H5_API_UNSET_CANCEL \
        +
        if (H5_IS_API(__func__)) { \
        +
        H5_cancel_count_inc(); \
        +
        }
        +

        +<code>H5_API_LOCK_BEGIN</code>

        +
        #define H5_API_LOCK_BEGIN \
        +
        if (H5_IS_API(__func__)) { \
        +
        H5_mutex_lock(&amp;H5_g.init_lock);
        +

        +<code>H5_API_LOCK_END</code>

        +
        #define H5_API_LOCK_END }
        +

        +<code>HRETURN</code> and <code>HRETURN_ERROR</code>

        +
        :
        +
        :
        +
        H5_API_UNLOCK_BEGIN \
        +
        H5_API_UNLOCK_END \
        +
        H5_API_SET_CANCEL \
        +
        return ret_val; \
        +
        }
        +

        +<code>H5_API_UNLOCK_BEGIN</code>

        +
        #define H5_API_UNLOCK_BEGIN \
        +
        if (H5_IS_API(__func__)) { \
        +
        H5_mutex_unlock(&amp;H5_g.init_lock);
        +

        +<code>H5_API_UNLOCK_END</code>

        +
        #define H5_API_UNLOCK_END }
        +
        </pre>
        +

        +<code>H5_API_SET_CANCEL</code>

        +
        #define H5_API_SET_CANCEL \
        +
        if (H5_IS_API(__func__)) { \
        +
        H5_cancel_count_dec(); \
        +
        }
        +
        +
        +
        + + + + diff --git a/develop/todo.html b/develop/todo.html index ec2ea31e74d..8a330c413eb 100644 --- a/develop/todo.html +++ b/develop/todo.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        @@ -122,48 +122,42 @@ $(document).ready(function(){initNavTree('todo.html',''); initResizable(); });
        -
        Page DDL in BNF for HDF5 1.12 through HDF5 1.14.3
        -
        Revise this & break it up!
        -
        Page DDL in BNF for HDF5 1.14.4 and above
        -
        Revise this & break it up!
        -
        Page DDL in BNF through HDF5 1.10
        -
        Revise this & break it up!
        Global H5DSset_scale (hid_t dsid, const char *dimname)
        -
        what is [9] after Palette interface?
        +
        what is [9] after Palette interface?
        Module H5ES
        -
        Add the event set life cycle.
        +
        Add the event set life cycle.
        Global H5LTopen_file_image (void *buf_ptr, size_t buf_size, unsigned flags)
        -
        There is no "See Also" section???
        +
        There is no "See Also" section???
        Module H5VL
        -
        Describe the VOL plugin life cycle.
        +
        Describe the VOL plugin life cycle.
        Page HDF5 Event Set
        -
        Under Construction
        +
        Under Construction
        Page HDF5 Filters
        -
        Under Construction
        +
        Under Construction
        Page HDF5 High Level Dimension Scales
        -
        Under Construction
        +
        Under Construction
        Page HDF5 High Level Images
        -
        Under Construction
        -
        Page HDF5 High Level Lite
        -
        Under Construction
        -
        Page HDF5 High Level Optimizations
        Under Construction
        +
        Page HDF5 High Level Lite
        +
        Under Construction
        +
        Page HDF5 High Level Optimizations
        +
        Under Construction
        Page HDF5 High Level Packet Table
        -
        Under Construction
        +
        Under Construction
        Page HDF5 High Level Table
        -
        Under Construction
        +
        Under Construction
        Page HDF5 Identifiers
        -
        Under Construction
        +
        Under Construction
        Page HDF5 Links
        -
        Under Construction
        +
        Under Construction
        Page HDF5 Objects
        -
        Under Construction
        +
        Under Construction
        Page HDF5 VOL Data Mapping
        -

        Describe the map life cycle.

        -

        How does MAPL fit into Property List Classes.

        +

        Describe the map life cycle.

        +

        How does MAPL fit into Property List Classes.

        Page Metadata Caching in HDF5
        -
        Revise this!
        +
        Revise this!
        diff --git a/develop/union_h5_v_l__map__args__t.html b/develop/union_h5_v_l__map__args__t.html index ac3c8906845..e61be5d4d56 100644 --- a/develop/union_h5_v_l__map__args__t.html +++ b/develop/union_h5_v_l__map__args__t.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/union_h5_v_l__native__attr__optional__args__t.html b/develop/union_h5_v_l__native__attr__optional__args__t.html index f9ff6ba8c3d..fc86ed533d0 100644 --- a/develop/union_h5_v_l__native__attr__optional__args__t.html +++ b/develop/union_h5_v_l__native__attr__optional__args__t.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/union_h5_v_l__native__dataset__optional__args__t.html b/develop/union_h5_v_l__native__dataset__optional__args__t.html index 2d00bc2a087..a42dc448b77 100644 --- a/develop/union_h5_v_l__native__dataset__optional__args__t.html +++ b/develop/union_h5_v_l__native__dataset__optional__args__t.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/union_h5_v_l__native__file__optional__args__t.html b/develop/union_h5_v_l__native__file__optional__args__t.html index f54af8b6be4..558ab7c3be3 100644 --- a/develop/union_h5_v_l__native__file__optional__args__t.html +++ b/develop/union_h5_v_l__native__file__optional__args__t.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/union_h5_v_l__native__group__optional__args__t.html b/develop/union_h5_v_l__native__group__optional__args__t.html index 20bbc886f5e..9c0c004500c 100644 --- a/develop/union_h5_v_l__native__group__optional__args__t.html +++ b/develop/union_h5_v_l__native__group__optional__args__t.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/union_h5_v_l__native__object__optional__args__t.html b/develop/union_h5_v_l__native__object__optional__args__t.html index e7bba3fc9e1..c55568ed4aa 100644 --- a/develop/union_h5_v_l__native__object__optional__args__t.html +++ b/develop/union_h5_v_l__native__object__optional__args__t.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference
        diff --git a/develop/vol_a_p_is_8dox.html b/develop/vol_a_p_is_8dox.html index d5a1ab6bcd1..cd7a791584a 100644 --- a/develop/vol_a_p_is_8dox.html +++ b/develop/vol_a_p_is_8dox.html @@ -37,7 +37,7 @@ Logo -
        HDF5 1.15.0 +
        HDF5 1.15.0.bca2806
        API Reference