Fix spelling (#4522)

.codespellrc

@@ -1,6 +1,6 @@
 # Ref: https://github.com/codespell-project/codespell#using-a-config-file
 [codespell]
-skip = .git,*.svg,.codespellrc,./bin/trace,./hl/tools/h5watch/h5watch.c,./tools/test/h5jam/tellub.c,./config/sanitizer/LICENSE,./config/sanitizer/sanitizers.cmake,./tools/test/h5repack/testfiles/*.dat,./test/API/driver,./configure,./bin/ltmain.sh,./bin/depcomp,./bin/config.guess,./bin/config.sub,./autom4te.cache,./m4/libtool.m4,./c++/src/*.html,./HDF5Examples/depcomp
+skip = .git,*.svg,.codespellrc,./bin/trace,./hl/tools/h5watch/h5watch.c,./tools/test/h5jam/tellub.c,./config/sanitizer/LICENSE,./config/sanitizer/sanitizers.cmake,./tools/test/h5import/testfiles/*.conf,./tools/test/h5repack/testfiles/*.dat,./test/API/driver,./configure,./bin/ltmain.sh,./bin/depcomp,./bin/config.guess,./bin/config.sub,./autom4te.cache,./m4/libtool.m4,./c++/src/*.html,./HDF5Examples/depcomp
 check-hidden = true
 # ignore-regex = 
-ignore-words-list = ot,isnt,inout,nd,parms,parm,ba,offsetP,ser,ois,had,fiter,fo,clude,refere,minnum,offsetp,creat,ans:,eiter,lastr,ans,isn't,ifset,sur,trun,dne,tthe,hda,filname,te,htmp,ake,gord,numer,ro,oce,msdos
+ignore-words-list = ot,isnt,inout,nd,parms,parm,ba,offsetP,ser,ois,had,fiter,fo,clude,refere,minnum,offsetp,creat,ans:,eiter,lastr,ans,isn't,ifset,sur,trun,dne,tthe,hda,filname,te,htmp,ake,gord,numer,ro,oce,msdos,TEXTIN

CODE_OF_CONDUCT.md

@@ -5,7 +5,7 @@
 We as members, contributors, and leaders pledge to make participation in our
 community a harassment-free experience for everyone, regardless of age, body
 size, visible or invisible disability, ethnicity, sex characteristics, gender
-identity and expression, level of experience, education, socio-economic status,
+identity and expression, level of experience, education, socioeconomic status,
 nationality, personal appearance, race, religion, or sexual identity
 and orientation.
 

config/cmake/NSIS.template.in

@@ -385,7 +385,7 @@ Function un.RemoveFromPath
 FunctionEnd
 
 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
-; Uninstall sutff
+; Uninstall stuff
 ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
 
 ###########################################

hl/src/H5TB.c

@@ -593,7 +593,7 @@ H5TBwrite_fields_index(hid_t loc_id, const char *dset_name, hsize_t nfields, con
     if ((write_type_id = H5Tcreate(H5T_COMPOUND, type_size)) < 0)
         goto out;
 
-    /* iterate tru the members */
+    /* iterate through the members */
     for (i = 0; i < nfields; i++) {
         unsigned j;
 
@@ -1032,7 +1032,7 @@ H5TBread_fields_index(hid_t loc_id, const char *dset_name, hsize_t nfields, cons
     if ((read_type_id = H5Tcreate(H5T_COMPOUND, type_size)) < 0)
         goto out;
 
-    /* iterate tru the members */
+    /* iterate through the members */
     for (i = 0; i < nfields; i++) {
         unsigned j;
 
@@ -2998,7 +2998,7 @@ H5TBget_field_info(hid_t loc_id, const char *dset_name, char *field_names[], siz
     if ((nfields = H5Tget_nmembers(tid)) < 0)
         goto out;
 
-    /* iterate tru the members */
+    /* iterate through the members */
     for (i = 0; i < nfields; i++) {
         /* get the member name */
         if (field_names) {

release_docs/HISTORY-1_0-1_8_0.txt

@@ -1525,7 +1525,7 @@ New Features
 Support for New Platforms, Languages and Compilers
 ==================================================
 
-No new platorms, languages, or compilers are supported in this release.
+No new platforms, languages, or compilers are supported in this release.
 
 
 Bug Fixes since HDF5-1.6.6 Release

src/H5ACmpio.c

@@ -1134,7 +1134,7 @@ done:
  *
  *		2) Apply the candidate entry list.
  *
- *		3) Particpate in a closing barrier.
+ *		3) Participate in a closing barrier.
  *
  *		4) Remove from the dirty list (d_slist_ptr) and from the
  *		   flushed and still clean entries list (c_slist_ptr),
@@ -1151,7 +1151,7 @@ done:
  *
  *		2) Apply the candidate entry list.
  *
- *		3) Particpate in a closing barrier.
+ *		3) Participate in a closing barrier.
  *
  * Return:      Success:        non-negative
  *

src/H5CX.c

@@ -3365,7 +3365,7 @@ done:
 /*-------------------------------------------------------------------------
  * Function:    H5CX_test_set_mpio_coll_chunk_link_num_true
  *
- * Purpose:     Sets the instrumented "collective chunk link num tru" value for the current API call context.
+ * Purpose:     Sets the instrumented "collective chunk link num true" value for the current API call context.
  *
  * Note:        Only sets value if property set in DXPL
  *

src/H5Dchunk.c

@@ -5376,7 +5376,7 @@ H5D__chunk_update_old_edge_chunks(H5D_t *dset, hsize_t old_dim[])
     const uint32_t     *chunk_dim = layout->u.chunk.dim;  /* Convenience pointer to chunk dimensions */
     unsigned            space_ndims;                      /* Dataset's space rank */
     const hsize_t      *space_dim;                        /* Dataset's dataspace dimensions */
-    unsigned            op_dim;                           /* Current operationg dimension */
+    unsigned            op_dim;                           /* Current operating dimension */
     H5D_io_info_t       chk_io_info;                      /* Chunked I/O info object */
     H5D_chunk_ud_t      chk_udata;                        /* User data for locking chunk */
     H5D_storage_t       chk_store;                        /* Chunk storage information */

src/H5FApkg.h

@@ -120,7 +120,7 @@ typedef struct H5FA_hdr_t {
     haddr_t dblk_addr; /* Address of Fixed Array Data block */
 
     /* Statistics for Fixed Array (stored in header) */
-    H5FA_stat_t stats; /* Statistcs for Fixed Array */
+    H5FA_stat_t stats; /* Statistics for Fixed Array */
 
     /* Computed/cached values (not stored in header) */
     size_t  rc;             /* Reference count of the header                                */

src/H5FDsubfiling/H5FDioc_priv.h

@@ -164,7 +164,7 @@ do {
  *         into the IOC I/O Queue, and set to true when the entry is dispatched
  *         to the worker thread pool for execution.
  *
- *         When in_progress is FALS, the entry is said to be pending.
+ *         When in_progress is false, the entry is said to be pending.
  *
  * counter: uint32_t containing a serial number assigned to this IOC
  *         I/O Queue entry.  Note that this will roll over on long

src/H5Shyper.c

@@ -7722,7 +7722,7 @@ H5S__hyper_clip_spans(H5S_hyper_span_info_t *a_spans, H5S_hyper_span_info_t *b_s
                         /* Keep going, nothing to split off */
                     } /* end else */
 
-                    /* Check for overlaps between span 'a' and midle of span 'b' */
+                    /* Check for overlaps between span 'a' and middle of span 'b' */
 
                     /* Make certain both spans either have a down span or both don't have one */
                     assert((span_a->down != NULL && span_b->down != NULL) ||

src/H5VLint.c

@@ -354,7 +354,7 @@ H5VL__set_def_conn(void)
     H5P_genclass_t *def_fapclass;           /* Default file access property class */
     const char     *env_var;                /* Environment variable for default VOL connector */
     char           *buf          = NULL;    /* Buffer for tokenizing string */
-    hid_t           connector_id = -1;      /* VOL conntector ID */
+    hid_t           connector_id = -1;      /* VOL connector ID */
     void           *vol_info     = NULL;    /* VOL connector info */
     herr_t          ret_value    = SUCCEED; /* Return value */
 

test/bittests.c

@@ -170,7 +170,7 @@ test_copy(void)
                 break;
         if (size > 0 && j >= (int)sizeof(v2)) {
             H5_FAILED();
-            puts("    Unabled to find copied region in destination");
+            puts("    Unable to find copied region in destination");
             goto failed;
         }
         if (0 == size && j < (int)sizeof(v2)) {
@@ -677,7 +677,7 @@ test_set(void)
                 break;
         if (size > 0 && j >= (int)sizeof(v2)) {
             H5_FAILED();
-            puts("    Unabled to find set region in buffer");
+            puts("    Unable to find set region in buffer");
             goto failed;
         }
         if (0 == size && j < (int)sizeof(v2)) {
@@ -792,7 +792,7 @@ test_clear(void)
                 break;
         if (size > 0 && j >= (int)sizeof(v2)) {
             H5_FAILED();
-            puts("    Unabled to find cleared region in buffer");
+            puts("    Unable to find cleared region in buffer");
             goto failed;
         }
         if (0 == size && j < (int)sizeof(v2)) {

test/fheap.c

@@ -16043,7 +16043,7 @@ main(void)
                 if (H5Pset_file_space_strategy(fcpl, H5F_FSPACE_STRATEGY_FSM_AGGR, true, (hsize_t)1) < 0)
                     TEST_ERROR;
                 fapl = def_fapl;
-                /* This is a fix for the daily test failure from the checkin for libver bounds. */
+                /* This is a fix for the daily test failure from the commit for libver bounds. */
                 /*
                  * Many tests failed the file size check when comparing (a) and (b) as below:
                  * --Create a file and close the file.  Got the initial file size (a).

test/gen_old_group.c

@@ -15,7 +15,7 @@
  *              empty "symbol table" group.
  *
  *              This file is used in the v1.7 branch (after the "compact group"
- *              checkin) to test compatibility.  Compile and run this
+ *              commit) to test compatibility.  Compile and run this
  *              program (with the 1.6.x branch), it will generate a file*
  *              called "group_old.h5".  You need to move it to the test
  *              directory in the HDF5 v1.7 source tree.  The test/stab.c

test/tsohm.c

@@ -2422,7 +2422,7 @@ test_sohm_size2(int close_reopen)
         (list_index_small.attrs1 - list_index_small.interleaved))
         VERIFY(0, 1, "h5_get_file_size");
 
-    /* Give it some overhead (for checkin to move messages into continuation message) */
+    /* Give it some overhead (for commit to move messages into continuation message) */
     if ((list_index_small.attrs1 - list_index_small.interleaved) >
         (h5_stat_size_t)((float)(btree_index.attrs1 - btree_index.interleaved) * OVERHEAD_ALLOWED))
         VERIFY(0, 1, "h5_get_file_size");

test/unlink.c

@@ -207,7 +207,7 @@ test_many(hid_t file)
     } /* end for */
     PASSED();
 
-    /* Create a bunch of names and unlink them from the midle */
+    /* Create a bunch of names and unlink them from the middle */
     TESTING("outward unlink");
     for (i = 0; i < how_many; i++) {
         snprintf(name, sizeof(name), "obj_%05d", i);

tools/src/h5repack/h5repack_opttable.c

@@ -191,7 +191,7 @@ options_add_layout(obj_list_t *obj_list, unsigned n_objs, pack_info_t *pack, pac
 
     /* search if this object is already in the table; "path" is the key */
     if (table->nelems > 0) {
-        /* go tru the supplied list of names */
+        /* go through the supplied list of names */
         for (j = 0; j < n_objs; j++) {
             /* linear table search */
             for (i = 0; i < table->nelems; i++) {
@@ -234,7 +234,7 @@ options_add_layout(obj_list_t *obj_list, unsigned n_objs, pack_info_t *pack, pac
     }
     /* first time insertion */
     else {
-        /* go tru the supplied list of names */
+        /* go through the supplied list of names */
         for (j = 0; j < n_objs; j++) {
             I = table->nelems + added;
             added++;
@@ -307,7 +307,7 @@ options_add_filter(obj_list_t *obj_list, unsigned n_objs, filter_info_t filt, pa
 
     /* first time insertion */
     else {
-        /* go tru the supplied list of names */
+        /* go through the supplied list of names */
         for (j = 0; j < n_objs; j++) {
             I = table->nelems + added;
             added++;

tools/test/h5dump/h5dumpgentest.c

@@ -6599,8 +6599,8 @@ gent_hyperslab(void)
 /*-------------------------------------------------------------------------
  * Function: gent_group_creation_order
  *
- * Purpose: generate a file with several groups with creation order set and not
+ * Purpose: generate a file with several groups with creation order set and
- *  set tru its hierarchy
+ *  not set throughout its hierarchy
  *
  *-------------------------------------------------------------------------
  */