mirror of
https://github.com/HDFGroup/hdf5.git
synced 2026-09-25 04:09:44 +03:00
Develop jni trans (#2266)
* Add compound and refactor out atomic types * Add Array String tests back * Convert Attribute version of compound example * Update transfer atom8ic read to return object
This commit is contained in:
Allen Byrne
+141
-4
@@ -46,6 +46,7 @@ public class TestH5A {
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private static final int DIM_Y = 6;
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long H5fid = HDF5Constants.H5I_INVALID_HID;
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long H5dsid = HDF5Constants.H5I_INVALID_HID;
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long H5atid = HDF5Constants.H5I_INVALID_HID;
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long H5did = HDF5Constants.H5I_INVALID_HID;
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long[] H5dims = {DIM_X, DIM_Y};
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long type_id = HDF5Constants.H5I_INVALID_HID;
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@@ -136,8 +137,12 @@ public class TestH5A {
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}
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catch (Exception ex) {
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}
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_deleteFile(H5_FILE);
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if (H5atid > 0)
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try {
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H5.H5Tclose(H5atid);
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}
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catch (Exception ex) {
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}
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if (type_id > 0)
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try {
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@@ -163,6 +168,8 @@ public class TestH5A {
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}
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catch (Exception ex) {
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}
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_deleteFile(H5_FILE);
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System.out.println();
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}
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@@ -1072,7 +1079,7 @@ public class TestH5A {
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HDF5Constants.H5P_DEFAULT);
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assertTrue("testH5Awrite_readVL: ", attr_id >= 0);
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H5.H5Awrite_VLStrings(attr_id, atype_id, str_data);
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H5.H5AwriteVL(attr_id, atype_id, str_data);
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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@@ -1084,7 +1091,7 @@ public class TestH5A {
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strs[j] = "";
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}
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try {
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H5.H5Aread_VLStrings(attr_id, atype_id, strs);
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H5.H5AreadVL(attr_id, atype_id, strs);
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}
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catch (Exception ex) {
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ex.printStackTrace();
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@@ -1863,4 +1870,134 @@ public class TestH5A {
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}
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}
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}
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@Test
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public void testH5AArray_string_buffer() throws Throwable
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{
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String att_str_name = "ArrayStringdata";
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long att_str_id = HDF5Constants.H5I_INVALID_HID;
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long atype_str_id = HDF5Constants.H5I_INVALID_HID;
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long aspace_id = HDF5Constants.H5I_INVALID_HID;
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long[] strdims = {4};
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long[] dims = {6};
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long lsize = 1;
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String[] str_data0 = {"Parting", "is such", "sweet", "sorrow."};
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String[] str_data1 = {"Testing", "one", "two", "three."};
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String[] str_data2 = {"Dog,", "man's", "best", "friend."};
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String[] str_data3 = {"Diamonds", "are", "a", "girls!"};
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String[] str_data4 = {"S A", "T U R", "D A Y", "night"};
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String[] str_data5 = {"That's", "all", "folks", "!!!"};
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ArrayList[] arr_str_data = new ArrayList[6];
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arr_str_data[0] = new ArrayList<String>(Arrays.asList(str_data0));
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arr_str_data[1] = new ArrayList<String>(Arrays.asList(str_data1));
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arr_str_data[2] = new ArrayList<String>(Arrays.asList(str_data2));
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arr_str_data[3] = new ArrayList<String>(Arrays.asList(str_data3));
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arr_str_data[4] = new ArrayList<String>(Arrays.asList(str_data4));
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arr_str_data[5] = new ArrayList<String>(Arrays.asList(str_data5));
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try {
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H5atid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5AArray_string_buffer.H5.H5Tcopy: " + err);
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}
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assertTrue("testH5AArray_string_buffer.H5Tcopy: ", H5atid >= 0);
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try {
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H5.H5Tset_size(H5atid, HDF5Constants.H5T_VARIABLE);
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assertTrue("testH5AArray_string_buffer.H5Tis_variable_str", H5.H5Tis_variable_str(H5atid));
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5DArray_string_buffer.H5Tset_size: " + err);
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}
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try {
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atype_str_id = H5.H5Tarray_create(H5atid, 1, strdims);
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assertTrue("testH5AArray_string_buffer.H5Tarray_create: ", atype_str_id >= 0);
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}
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catch (Exception err) {
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if (atype_str_id > 0)
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try {
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H5.H5Tclose(atype_str_id);
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}
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catch (Exception ex) {
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}
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err.printStackTrace();
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fail("testH5AArray_string_buffer: " + err);
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}
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try {
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aspace_id = H5.H5Screate_simple(1, dims, null);
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assertTrue(aspace_id > 0);
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att_str_id = H5.H5Acreate(H5did, att_str_name, atype_str_id, aspace_id, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT);
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assertTrue("testH5AArray_string_buffer: ", att_str_id >= 0);
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H5.H5AwriteVL(att_str_id, atype_str_id, arr_str_data);
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}
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catch (Exception err) {
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if (att_str_id > 0)
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try {
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H5.H5Dclose(att_str_id);
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}
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catch (Exception ex) {
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}
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if (atype_str_id > 0)
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try {
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H5.H5Tclose(atype_str_id);
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}
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catch (Exception ex) {
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}
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err.printStackTrace();
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fail("testH5AArray_string_buffer: " + err);
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}
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finally {
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if (aspace_id > 0)
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try {
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H5.H5Sclose(aspace_id);
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}
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catch (Exception ex) {
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}
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}
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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for (int j = 0; j < dims.length; j++)
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lsize *= dims[j];
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ArrayList[] arr_readbuf = new ArrayList[6];
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for (int j = 0; j < lsize; j++)
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arr_readbuf[j] = new ArrayList<String>();
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try {
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H5.H5AreadVL(att_str_id, atype_str_id, arr_readbuf);
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}
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catch (Exception ex) {
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ex.printStackTrace();
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}
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finally {
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if (att_str_id > 0)
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try {
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H5.H5Aclose(att_str_id);
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}
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catch (Exception ex) {
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}
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if (atype_str_id > 0)
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try {
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H5.H5Tclose(atype_str_id);
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}
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catch (Exception ex) {
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}
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}
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assertTrue("testH5AArray_string_buffer:" + arr_readbuf[0].get(0),
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arr_str_data[0].get(0).equals(arr_readbuf[0].get(0)));
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assertTrue("testH5AArray_string_buffer:" + arr_readbuf[1].get(0),
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arr_str_data[1].get(0).equals(arr_readbuf[1].get(0)));
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assertTrue("testH5AArray_string_buffer:" + arr_readbuf[2].get(0),
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arr_str_data[2].get(0).equals(arr_readbuf[2].get(0)));
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assertTrue("testH5AArray_string_buffer:" + arr_readbuf[3].get(0),
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arr_str_data[3].get(0).equals(arr_readbuf[3].get(0)));
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}
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}
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+471
-48
@@ -158,7 +158,7 @@ public class TestH5D {
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assertTrue("TestH5D._createDataset.H5Dcreate: ", H5did >= 0);
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}
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private final void _createVLDataset(long fid, long dsid, String name, long dapl)
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private final void _createVLStrDataset(String name, long dapl)
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{
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try {
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H5dtid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
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@@ -167,24 +167,24 @@ public class TestH5D {
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err.printStackTrace();
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fail("H5.H5Tcopy: " + err);
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}
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assertTrue("TestH5D._createVLDataset.H5Tcopy: ", H5dtid >= 0);
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assertTrue("TestH5D._createVLStrDataset.H5Tcopy: ", H5dtid >= 0);
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try {
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H5.H5Tset_size(H5dtid, HDF5Constants.H5T_VARIABLE);
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assertTrue("TestH5D._createVLDataset.H5Tis_variable_str", H5.H5Tis_variable_str(H5dtid));
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assertTrue("TestH5D._createVLStrDataset.H5Tis_variable_str", H5.H5Tis_variable_str(H5dtid));
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Tset_size: " + err);
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}
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try {
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H5did = H5.H5Dcreate(fid, name, H5dtid, dsid, HDF5Constants.H5P_DEFAULT,
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H5did = H5.H5Dcreate(H5fid, name, H5dtid, H5dsid, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT, dapl);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Dcreate: " + err);
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}
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assertTrue("TestH5D._createVLDataset.H5Dcreate: ", H5did >= 0);
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assertTrue("TestH5D._createVLStrDataset.H5Dcreate: ", H5did >= 0);
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}
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private final void _closeH5file() throws HDF5LibraryException
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@@ -935,7 +935,7 @@ public class TestH5D {
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buf_data[(indx * DIM_Y) + jndx] == 126);
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}
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@Test
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@Ignore
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public void testH5Dvlen_get_buf_size()
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{
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String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.",
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@@ -946,12 +946,12 @@ public class TestH5D {
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for (int idx = 0; idx < str_data.length; idx++)
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str_data_bytes += str_data[idx].length() + 1; // Account for terminating null
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_createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
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_createVLStrDataset("dset", HDF5Constants.H5P_DEFAULT);
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try {
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if ((H5did >= 0) && (H5dtid >= 0))
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H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT, str_data);
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H5.H5DwriteVL(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT, str_data);
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}
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catch (Exception e) {
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e.printStackTrace();
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@@ -966,25 +966,121 @@ public class TestH5D {
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}
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@Ignore
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public void testH5Dvlen_read_default_buffer() throws Throwable
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public void testH5Dvlen_string_buffer() throws Throwable
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{
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String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.",
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"Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!",
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"S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"};
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byte[] read_data = new byte[512];
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String dset_str_name = "VLStringdata";
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long dset_str_id = HDF5Constants.H5I_INVALID_HID;
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long dtype_str_id = HDF5Constants.H5I_INVALID_HID;
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long dspace_id = HDF5Constants.H5I_INVALID_HID;
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long[] dims = {64};
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long lsize = 1;
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_createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
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String[] str_data0 = {"Parting", "is such", "sweet", "sorrow."};
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String[] str_data1 = {"Testing", "one", "two", "three."};
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String[] str_data2 = {"Dog,", "man's", "best", "friend."};
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String[] str_data3 = {"Diamonds", "are", "a", "girls!"};
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String[] str_data4 = {"S A", "T U R", "D A Y", "night"};
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String[] str_data5 = {"That's", "all", "folks", "!!!"};
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ArrayList[] vl_str_data = new ArrayList[6];
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vl_str_data[0] = new ArrayList<String>(Arrays.asList(str_data0));
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vl_str_data[1] = new ArrayList<String>(Arrays.asList(str_data1));
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vl_str_data[2] = new ArrayList<String>(Arrays.asList(str_data2));
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vl_str_data[3] = new ArrayList<String>(Arrays.asList(str_data3));
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vl_str_data[4] = new ArrayList<String>(Arrays.asList(str_data4));
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vl_str_data[5] = new ArrayList<String>(Arrays.asList(str_data5));
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try {
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H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT, str_data);
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H5dtid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
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}
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catch (Exception e) {
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e.printStackTrace();
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Dvlen_string_buffer.H5.H5Tcopy: " + err);
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}
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assertTrue("testH5Dvlen_string_buffer.H5Tcopy: ", H5dtid >= 0);
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try {
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H5.H5Tset_size(H5dtid, HDF5Constants.H5T_VARIABLE);
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assertTrue("testH5Dvlen_string_buffer.H5Tis_variable_str", H5.H5Tis_variable_str(H5dtid));
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Dvlen_string_buffer.H5Tset_size: " + err);
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}
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try {
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dtype_str_id = H5.H5Tvlen_create(H5dtid);
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assertTrue("testH5Dvlen_string_buffer.H5Tvlen_create: ", dtype_str_id >= 0);
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}
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catch (Exception err) {
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if (dtype_str_id > 0)
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try {
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H5.H5Tclose(dtype_str_id);
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}
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catch (Exception ex) {
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}
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err.printStackTrace();
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fail("testH5Dvlen_string_buffer: " + err);
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}
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H5.H5Dread(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT,
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read_data);
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try {
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dspace_id = H5.H5Screate_simple(1, dims, null);
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assertTrue(dspace_id > 0);
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dset_str_id =
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H5.H5Dcreate(H5fid, dset_str_name, dtype_str_id, dspace_id, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
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assertTrue("testH5Dvlen_string_buffer: ", dset_str_id >= 0);
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H5.H5DwriteVL(dset_str_id, dtype_str_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT, vl_str_data);
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}
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catch (Exception err) {
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if (dset_str_id > 0)
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try {
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H5.H5Dclose(dset_str_id);
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}
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catch (Exception ex) {
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}
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if (dtype_str_id > 0)
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try {
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H5.H5Tclose(dtype_str_id);
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}
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catch (Exception ex) {
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}
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err.printStackTrace();
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fail("testH5Dvlen_string_buffer: " + err);
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}
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finally {
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if (dspace_id > 0)
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try {
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H5.H5Sclose(dspace_id);
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}
|
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catch (Exception ex) {
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}
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}
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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for (int j = 0; j < dims.length; j++)
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lsize *= dims[j];
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ArrayList[] vl_readbuf = new ArrayList[4];
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for (int j = 0; j < lsize; j++)
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vl_readbuf[j] = new ArrayList<String>();
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try {
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H5.H5DreadVL(dset_str_id, dtype_str_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
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HDF5Constants.H5P_DEFAULT, vl_readbuf);
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}
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catch (Exception ex) {
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ex.printStackTrace();
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}
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assertTrue("testH5Dvlen_string_buffer:" + vl_readbuf[0].get(0),
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vl_str_data[0].get(0).equals(vl_readbuf[0].get(0)));
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assertTrue("testH5Dvlen_string_buffer:" + vl_readbuf[1].get(0),
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vl_str_data[1].get(0).equals(vl_readbuf[1].get(0)));
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assertTrue("testH5Dvlen_string_buffer:" + vl_readbuf[2].get(0),
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vl_str_data[2].get(0).equals(vl_readbuf[2].get(0)));
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assertTrue("testH5Dvlen_string_buffer:" + vl_readbuf[3].get(0),
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vl_str_data[3].get(0).equals(vl_readbuf[3].get(0)));
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}
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@Test
|
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@@ -995,20 +1091,21 @@ public class TestH5D {
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"S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"};
|
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String[] str_rdata = new String[DIM_X * DIM_Y];
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_createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
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_createVLStrDataset("dset", HDF5Constants.H5P_DEFAULT);
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|
||||
try {
|
||||
if ((H5did >= 0) && (H5dtid >= 0))
|
||||
H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, str_wdata);
|
||||
H5.H5DwriteVL(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, str_wdata);
|
||||
}
|
||||
catch (Exception e) {
|
||||
e.printStackTrace();
|
||||
}
|
||||
|
||||
try {
|
||||
if ((H5did >= 0) && (H5dtid >= 0))
|
||||
H5.H5Dread_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, str_rdata);
|
||||
H5.H5DreadVL(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, str_rdata);
|
||||
}
|
||||
catch (Exception e) {
|
||||
e.printStackTrace();
|
||||
@@ -1158,46 +1255,46 @@ public class TestH5D {
|
||||
lsize *= dims[j];
|
||||
|
||||
// Read Integer data
|
||||
ArrayList[] vl_readbuf = new ArrayList[4];
|
||||
ArrayList[] vl_int_readbuf = new ArrayList[4];
|
||||
for (int j = 0; j < lsize; j++)
|
||||
vl_readbuf[j] = new ArrayList<Integer>();
|
||||
vl_int_readbuf[j] = new ArrayList<Integer>();
|
||||
|
||||
try {
|
||||
H5.H5DreadVL(dset_int_id, dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, vl_readbuf);
|
||||
HDF5Constants.H5P_DEFAULT, vl_int_readbuf);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
ex.printStackTrace();
|
||||
}
|
||||
assertTrue("testH5DVLwr:" + vl_readbuf[0].get(0),
|
||||
vl_int_data[0].get(0).equals(vl_readbuf[0].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_readbuf[1].get(0),
|
||||
vl_int_data[1].get(0).equals(vl_readbuf[1].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_readbuf[2].get(0),
|
||||
vl_int_data[2].get(0).equals(vl_readbuf[2].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_readbuf[3].get(0),
|
||||
vl_int_data[3].get(0).equals(vl_readbuf[3].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_int_readbuf[0].get(0),
|
||||
vl_int_data[0].get(0).equals(vl_int_readbuf[0].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_int_readbuf[1].get(0),
|
||||
vl_int_data[1].get(0).equals(vl_int_readbuf[1].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_int_readbuf[2].get(0),
|
||||
vl_int_data[2].get(0).equals(vl_int_readbuf[2].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_int_readbuf[3].get(0),
|
||||
vl_int_data[3].get(0).equals(vl_int_readbuf[3].get(0)));
|
||||
|
||||
// Read Double data
|
||||
vl_readbuf = new ArrayList[4];
|
||||
ArrayList[] vl_dbl_readbuf = new ArrayList[4];
|
||||
for (int j = 0; j < lsize; j++)
|
||||
vl_readbuf[j] = new ArrayList<Double>();
|
||||
vl_dbl_readbuf[j] = new ArrayList<Double>();
|
||||
|
||||
try {
|
||||
H5.H5DreadVL(dset_dbl_id, dtype_dbl_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, vl_readbuf);
|
||||
HDF5Constants.H5P_DEFAULT, vl_dbl_readbuf);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
ex.printStackTrace();
|
||||
}
|
||||
assertTrue("testH5DVLwr:" + vl_readbuf[0].get(0),
|
||||
vl_dbl_data[0].get(0).equals(vl_readbuf[0].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_readbuf[1].get(0),
|
||||
vl_dbl_data[1].get(0).equals(vl_readbuf[1].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_readbuf[2].get(0),
|
||||
vl_dbl_data[2].get(0).equals(vl_readbuf[2].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_readbuf[3].get(0),
|
||||
vl_dbl_data[3].get(0).equals(vl_readbuf[3].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_dbl_readbuf[0].get(0),
|
||||
vl_dbl_data[0].get(0).equals(vl_dbl_readbuf[0].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_dbl_readbuf[1].get(0),
|
||||
vl_dbl_data[1].get(0).equals(vl_dbl_readbuf[1].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_dbl_readbuf[2].get(0),
|
||||
vl_dbl_data[2].get(0).equals(vl_dbl_readbuf[2].get(0)));
|
||||
assertTrue("testH5DVLwr:" + vl_dbl_readbuf[3].get(0),
|
||||
vl_dbl_data[3].get(0).equals(vl_dbl_readbuf[3].get(0)));
|
||||
}
|
||||
catch (Throwable err) {
|
||||
err.printStackTrace();
|
||||
@@ -1524,4 +1621,330 @@ public class TestH5D {
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testH5DArray_string_buffer() throws Throwable
|
||||
{
|
||||
String dset_str_name = "ArrayStringdata";
|
||||
long dset_str_id = HDF5Constants.H5I_INVALID_HID;
|
||||
long dtype_str_id = HDF5Constants.H5I_INVALID_HID;
|
||||
long dspace_id = HDF5Constants.H5I_INVALID_HID;
|
||||
long[] strdims = {4};
|
||||
long[] dims = {6};
|
||||
long lsize = 1;
|
||||
|
||||
String[] str_data0 = {"Parting", "is such", "sweet", "sorrow."};
|
||||
String[] str_data1 = {"Testing", "one", "two", "three."};
|
||||
String[] str_data2 = {"Dog,", "man's", "best", "friend."};
|
||||
String[] str_data3 = {"Diamonds", "are", "a", "girls!"};
|
||||
String[] str_data4 = {"S A", "T U R", "D A Y", "night"};
|
||||
String[] str_data5 = {"That's", "all", "folks", "!!!"};
|
||||
|
||||
ArrayList[] arr_str_data = new ArrayList[6];
|
||||
arr_str_data[0] = new ArrayList<String>(Arrays.asList(str_data0));
|
||||
arr_str_data[1] = new ArrayList<String>(Arrays.asList(str_data1));
|
||||
arr_str_data[2] = new ArrayList<String>(Arrays.asList(str_data2));
|
||||
arr_str_data[3] = new ArrayList<String>(Arrays.asList(str_data3));
|
||||
arr_str_data[4] = new ArrayList<String>(Arrays.asList(str_data4));
|
||||
arr_str_data[5] = new ArrayList<String>(Arrays.asList(str_data5));
|
||||
|
||||
try {
|
||||
H5dtid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
|
||||
}
|
||||
catch (Throwable err) {
|
||||
err.printStackTrace();
|
||||
fail("testH5DArray_string_buffer.H5.H5Tcopy: " + err);
|
||||
}
|
||||
assertTrue("testH5DArray_string_buffer.H5Tcopy: ", H5dtid >= 0);
|
||||
try {
|
||||
H5.H5Tset_size(H5dtid, HDF5Constants.H5T_VARIABLE);
|
||||
assertTrue("testH5DArray_string_buffer.H5Tis_variable_str", H5.H5Tis_variable_str(H5dtid));
|
||||
}
|
||||
catch (Throwable err) {
|
||||
err.printStackTrace();
|
||||
fail("testH5DArray_string_buffer.H5Tset_size: " + err);
|
||||
}
|
||||
try {
|
||||
dtype_str_id = H5.H5Tarray_create(H5dtid, 1, strdims);
|
||||
assertTrue("testH5DArray_string_buffer.H5Tarray_create: ", dtype_str_id >= 0);
|
||||
}
|
||||
catch (Exception err) {
|
||||
if (dtype_str_id > 0)
|
||||
try {
|
||||
H5.H5Tclose(dtype_str_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
err.printStackTrace();
|
||||
fail("testH5DArray_string_buffer: " + err);
|
||||
}
|
||||
|
||||
try {
|
||||
dspace_id = H5.H5Screate_simple(1, dims, null);
|
||||
assertTrue(dspace_id > 0);
|
||||
dset_str_id =
|
||||
H5.H5Dcreate(H5fid, dset_str_name, dtype_str_id, dspace_id, HDF5Constants.H5P_DEFAULT,
|
||||
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
|
||||
assertTrue("testH5DArray_string_buffer: ", dset_str_id >= 0);
|
||||
|
||||
H5.H5DwriteVL(dset_str_id, dtype_str_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, arr_str_data);
|
||||
}
|
||||
catch (Exception err) {
|
||||
if (dset_str_id > 0)
|
||||
try {
|
||||
H5.H5Dclose(dset_str_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
if (dtype_str_id > 0)
|
||||
try {
|
||||
H5.H5Tclose(dtype_str_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
err.printStackTrace();
|
||||
fail("testH5DArray_string_buffer: " + err);
|
||||
}
|
||||
finally {
|
||||
if (dspace_id > 0)
|
||||
try {
|
||||
H5.H5Sclose(dspace_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
}
|
||||
|
||||
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
|
||||
|
||||
for (int j = 0; j < dims.length; j++)
|
||||
lsize *= dims[j];
|
||||
|
||||
ArrayList[] arr_readbuf = new ArrayList[6];
|
||||
for (int j = 0; j < lsize; j++)
|
||||
arr_readbuf[j] = new ArrayList<String>();
|
||||
|
||||
try {
|
||||
H5.H5DreadVL(dset_str_id, dtype_str_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, arr_readbuf);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
ex.printStackTrace();
|
||||
}
|
||||
finally {
|
||||
if (dset_str_id > 0)
|
||||
try {
|
||||
H5.H5Dclose(dset_str_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
if (dtype_str_id > 0)
|
||||
try {
|
||||
H5.H5Tclose(dtype_str_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
}
|
||||
assertTrue("testH5DArray_string_buffer:" + arr_readbuf[0].get(0),
|
||||
arr_str_data[0].get(0).equals(arr_readbuf[0].get(0)));
|
||||
assertTrue("testH5DArray_string_buffer:" + arr_readbuf[1].get(0),
|
||||
arr_str_data[1].get(0).equals(arr_readbuf[1].get(0)));
|
||||
assertTrue("testH5DArray_string_buffer:" + arr_readbuf[2].get(0),
|
||||
arr_str_data[2].get(0).equals(arr_readbuf[2].get(0)));
|
||||
assertTrue("testH5DArray_string_buffer:" + arr_readbuf[3].get(0),
|
||||
arr_str_data[3].get(0).equals(arr_readbuf[3].get(0)));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testH5DArrayenum_rw()
|
||||
{
|
||||
String dset_enum_name = "ArrayEnumdata";
|
||||
long dset_enum_id = HDF5Constants.H5I_INVALID_HID;
|
||||
long dtype_enum_id = HDF5Constants.H5I_INVALID_HID;
|
||||
long dtype_arr_enum_id = HDF5Constants.H5I_INVALID_HID;
|
||||
long dspace_id = HDF5Constants.H5I_INVALID_HID;
|
||||
long[] dims = {4};
|
||||
long lsize = 1;
|
||||
String enum_type = "Enum_type";
|
||||
byte[] enum_val = new byte[1];
|
||||
String enum_name = null;
|
||||
|
||||
// Create a enumerate datatype
|
||||
try {
|
||||
dtype_enum_id = H5.H5Tcreate(HDF5Constants.H5T_ENUM, (long)1);
|
||||
assertTrue("testH5DArrayenum_wr.H5Tarray_create: ", dtype_enum_id >= 0);
|
||||
}
|
||||
catch (Throwable err) {
|
||||
if (dtype_enum_id > 0)
|
||||
try {
|
||||
H5.H5Tclose(dtype_enum_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
err.printStackTrace();
|
||||
fail("testH5DArrayenum_rw:H5Tcreate " + err);
|
||||
}
|
||||
|
||||
try {
|
||||
enum_val[0] = 10;
|
||||
H5.H5Tenum_insert(dtype_enum_id, "RED", enum_val);
|
||||
enum_val[0] = 11;
|
||||
H5.H5Tenum_insert(dtype_enum_id, "GREEN", enum_val);
|
||||
enum_val[0] = 12;
|
||||
H5.H5Tenum_insert(dtype_enum_id, "BLUE", enum_val);
|
||||
enum_val[0] = 13;
|
||||
H5.H5Tenum_insert(dtype_enum_id, "ORANGE", enum_val);
|
||||
enum_val[0] = 14;
|
||||
H5.H5Tenum_insert(dtype_enum_id, "YELLOW", enum_val);
|
||||
|
||||
// Query member number and member index by member name, for enumeration type.
|
||||
assertTrue("Can't get member number", H5.H5Tget_nmembers(dtype_enum_id) == 5);
|
||||
assertTrue("Can't get correct index number",
|
||||
H5.H5Tget_member_index(dtype_enum_id, "ORANGE") == 3);
|
||||
|
||||
// Commit enumeration datatype and close it */
|
||||
H5.H5Tcommit(H5fid, enum_type, dtype_enum_id, HDF5Constants.H5P_DEFAULT,
|
||||
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
|
||||
|
||||
H5.H5Tclose(dtype_enum_id);
|
||||
|
||||
// Open the dataytpe for query
|
||||
dtype_enum_id = H5.H5Topen(H5fid, enum_type, HDF5Constants.H5P_DEFAULT);
|
||||
assertTrue("testH5DArrayenum_rw:H5Tcreate", dtype_enum_id >= 0);
|
||||
|
||||
// Query member number and member index by member name, for enumeration type
|
||||
assertTrue("Can't get member number", H5.H5Tget_nmembers(dtype_enum_id) == 5);
|
||||
assertTrue("Can't get correct index number",
|
||||
H5.H5Tget_member_index(dtype_enum_id, "ORANGE") == 3);
|
||||
|
||||
// Query member value by member name, for enumeration type
|
||||
H5.H5Tenum_valueof(dtype_enum_id, "ORANGE", enum_val);
|
||||
assertTrue("Incorrect value for enum member", enum_val[0] == 13);
|
||||
|
||||
// Query member value by member index, for enumeration type
|
||||
H5.H5Tget_member_value(dtype_enum_id, 2, enum_val);
|
||||
assertTrue("Incorrect value for enum member", enum_val[0] == 12);
|
||||
|
||||
// Query member name by member value, for enumeration type
|
||||
enum_val[0] = 14;
|
||||
enum_name = H5.H5Tenum_nameof(dtype_enum_id, enum_val, 16);
|
||||
assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW") == 0);
|
||||
|
||||
ArrayList[] arr_enum_data = new ArrayList[4];
|
||||
try {
|
||||
// Write Integer data
|
||||
arr_enum_data[0] = new ArrayList<Integer>(Arrays.asList(10, 11, 12, 13));
|
||||
arr_enum_data[1] = new ArrayList<Integer>(Arrays.asList(11, 12, 13, 14));
|
||||
arr_enum_data[2] = new ArrayList<Integer>(Arrays.asList(12, 13, 14, 10));
|
||||
arr_enum_data[3] = new ArrayList<Integer>(Arrays.asList(13, 14, 10, 11));
|
||||
Class dataClass = arr_enum_data.getClass();
|
||||
assertTrue("testH5DArrayenum_wr.getClass: " + dataClass, dataClass.isArray());
|
||||
|
||||
try {
|
||||
dtype_arr_enum_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_U32LE, 1, dims);
|
||||
assertTrue("testH5DArrayenum_wr.H5Tarray_create: ", dtype_arr_enum_id >= 0);
|
||||
}
|
||||
catch (Exception err) {
|
||||
if (dtype_arr_enum_id > 0)
|
||||
try {
|
||||
H5.H5Tclose(dtype_arr_enum_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
err.printStackTrace();
|
||||
fail("H5.testH5DArrayenum_wr: " + err);
|
||||
}
|
||||
|
||||
dspace_id = H5.H5Screate_simple(1, dims, null);
|
||||
assertTrue(dspace_id > 0);
|
||||
dset_enum_id = H5.H5Dcreate(H5fid, dset_enum_name, dtype_arr_enum_id, dspace_id,
|
||||
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
|
||||
HDF5Constants.H5P_DEFAULT);
|
||||
assertTrue("testH5DVLwr: ", dset_enum_id >= 0);
|
||||
|
||||
H5.H5DwriteVL(dset_enum_id, dtype_arr_enum_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, arr_enum_data);
|
||||
}
|
||||
catch (Throwable err) {
|
||||
if (dset_enum_id > 0)
|
||||
try {
|
||||
H5.H5Dclose(dset_enum_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
if (dtype_enum_id > 0)
|
||||
try {
|
||||
H5.H5Tclose(dtype_enum_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
if (dtype_arr_enum_id > 0)
|
||||
try {
|
||||
H5.H5Tclose(dtype_arr_enum_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
err.printStackTrace();
|
||||
fail("testH5DArrayenum_rw:query " + err);
|
||||
}
|
||||
finally {
|
||||
if (dspace_id > 0)
|
||||
try {
|
||||
H5.H5Sclose(dspace_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
}
|
||||
|
||||
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
|
||||
|
||||
for (int j = 0; j < dims.length; j++)
|
||||
lsize *= dims[j];
|
||||
|
||||
// Read Integer data
|
||||
ArrayList[] arr_readbuf = new ArrayList[4];
|
||||
for (int j = 0; j < lsize; j++)
|
||||
arr_readbuf[j] = new ArrayList<Integer>();
|
||||
|
||||
try {
|
||||
H5.H5DreadVL(dset_enum_id, dtype_arr_enum_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
|
||||
HDF5Constants.H5P_DEFAULT, arr_readbuf);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
ex.printStackTrace();
|
||||
}
|
||||
assertTrue("testH5DVLArrayenum_wr:" + arr_readbuf[0].get(0),
|
||||
arr_enum_data[0].get(0).equals(arr_readbuf[0].get(0)));
|
||||
assertTrue("testH5DVLArrayenum_wr:" + arr_readbuf[1].get(0),
|
||||
arr_enum_data[1].get(0).equals(arr_readbuf[1].get(0)));
|
||||
assertTrue("testH5DVLArrayenum_wr:" + arr_readbuf[2].get(0),
|
||||
arr_enum_data[2].get(0).equals(arr_readbuf[2].get(0)));
|
||||
assertTrue("testH5DVLArrayenum_wr:" + arr_readbuf[3].get(0),
|
||||
arr_enum_data[3].get(0).equals(arr_readbuf[3].get(0)));
|
||||
}
|
||||
catch (Throwable err) {
|
||||
err.printStackTrace();
|
||||
fail("H5.testH5DArrayenum_wr: " + err);
|
||||
}
|
||||
finally {
|
||||
if (dset_enum_id > 0)
|
||||
try {
|
||||
H5.H5Dclose(dset_enum_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
if (dtype_enum_id > 0)
|
||||
try {
|
||||
H5.H5Tclose(dtype_enum_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
if (dtype_arr_enum_id > 0)
|
||||
try {
|
||||
H5.H5Tclose(dtype_arr_enum_id);
|
||||
}
|
||||
catch (Exception ex) {
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -29,9 +29,10 @@ JUnit version 4.11
|
||||
.testH5Adelete_by_idx_null
|
||||
.testH5Adelete_by_idx_invalidobject
|
||||
.testH5Awrite_readVL
|
||||
.testH5AArray_string_buffer
|
||||
.testH5Aget_info1
|
||||
|
||||
Time: XXXX
|
||||
|
||||
OK (31 tests)
|
||||
OK (32 tests)
|
||||
|
||||
|
||||
@@ -1,4 +1,5 @@
|
||||
JUnit version 4.11
|
||||
.testH5DArrayenum_rw
|
||||
.testH5DVLwrVL
|
||||
.testH5Dget_storage_size
|
||||
.testH5DArraywr
|
||||
@@ -14,8 +15,8 @@ JUnit version 4.11
|
||||
.testH5Dget_storage_size_empty
|
||||
.testH5Diterate
|
||||
.testH5Dget_access_plist
|
||||
.testH5Dvlen_get_buf_size
|
||||
.testH5Dget_space_closed
|
||||
.testH5DArray_string_buffer
|
||||
.testH5Dget_space_status
|
||||
.testH5Dvlen_write_read
|
||||
.testH5Dget_space
|
||||
@@ -23,5 +24,5 @@ JUnit version 4.11
|
||||
|
||||
Time: XXXX
|
||||
|
||||
OK (21 tests)
|
||||
OK (22 tests)
|
||||
|
||||
|
||||
Reference in New Issue
Block a user